Wall clock time and date at job start Mon Mar 30 2020 01:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 120.00075 * 2 1 4 4 H 1.48502 * 109.46876 * 269.99795 * 3 2 1 5 5 H 1.48501 * 109.46722 * 29.99857 * 3 2 1 6 6 H 1.48495 * 109.46942 * 149.99859 * 3 2 1 7 7 C 1.37873 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00327 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99947 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47383 * 185.20862 * 9 7 2 11 11 C 1.46905 * 111.00099 * 190.93783 * 10 9 7 12 12 C 1.50699 * 109.46949 * 72.30221 * 11 10 9 13 13 C 1.38235 * 120.00171 * 269.72617 * 12 11 10 14 14 C 1.38235 * 120.00086 * 179.81688 * 13 12 11 15 15 C 1.38241 * 120.00073 * 0.39038 * 14 13 12 16 16 C 1.38238 * 119.99702 * 359.86400 * 15 14 13 17 17 C 1.38234 * 120.00183 * 359.95275 * 16 15 14 18 18 C 1.46900 * 111.00117 * 66.98017 * 10 9 7 19 19 C 1.52997 * 109.47518 * 201.15611 * 18 10 9 20 20 H 1.09006 * 110.27474 * 51.48810 * 19 18 10 21 21 C 1.54937 * 110.31252 * 173.57740 * 19 18 10 22 22 C 1.55306 * 100.98147 * 155.33641 * 21 19 18 23 23 C 1.54432 * 102.23148 * 325.92646 * 22 21 19 24 24 O 1.43243 * 107.60765 * 21.28968 * 23 22 21 25 25 H 0.96999 * 119.99578 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46972 * 65.21109 * 9 7 2 27 27 H 1.08998 * 109.47639 * 305.21179 * 9 7 2 28 28 H 1.08998 * 109.46588 * 192.30048 * 11 10 9 29 29 H 1.08998 * 109.47073 * 312.30221 * 11 10 9 30 30 H 1.07996 * 119.99592 * 359.97438 * 13 12 11 31 31 H 1.07996 * 120.00012 * 180.22850 * 14 13 12 32 32 H 1.07997 * 120.00107 * 179.83421 * 15 14 13 33 33 H 1.07997 * 119.99873 * 179.97438 * 16 15 14 34 34 H 1.08004 * 120.00207 * 180.02562 * 17 16 15 35 35 H 1.09001 * 109.46784 * 81.15596 * 18 10 9 36 36 H 1.08994 * 109.46962 * 321.16063 * 18 10 9 37 37 H 1.08995 * 111.12859 * 273.28046 * 21 19 18 38 38 H 1.09001 * 111.12298 * 37.40218 * 21 19 18 39 39 H 1.09003 * 110.84434 * 84.08540 * 22 21 19 40 40 H 1.09004 * 110.85153 * 207.69518 * 22 21 19 41 41 H 1.09002 * 109.78813 * 261.79579 * 23 22 21 42 42 H 1.08999 * 109.85580 * 140.82805 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5734 -0.1250 11 6 5.4463 -2.6442 0.1293 12 6 5.7077 -2.4470 1.6003 13 6 5.9216 -1.1760 2.1000 14 6 6.1576 -0.9947 3.4499 15 6 6.1877 -2.0853 4.2989 16 6 5.9789 -3.3568 3.7983 17 6 5.7392 -3.5377 2.4490 18 6 3.6705 -3.1321 -1.4428 19 6 3.7006 -4.6601 -1.3712 20 1 3.0890 -5.0114 -0.5401 21 6 3.1989 -5.2709 -2.7038 22 6 3.8934 -6.6597 -2.6726 23 6 5.2298 -6.3414 -1.9672 24 8 5.0520 -5.1261 -1.2302 25 1 -0.4849 0.8401 -0.0004 26 1 3.8752 -0.7626 0.9325 27 1 3.8746 -0.6021 -0.8402 28 1 5.8220 -3.6198 -0.1789 29 1 5.9536 -1.8637 -0.4377 30 1 5.9019 -0.3244 1.4361 31 1 6.3211 -0.0014 3.8409 32 1 6.3747 -1.9439 5.3532 33 1 6.0028 -4.2089 4.4615 34 1 5.5756 -4.5311 2.0580 35 1 4.3997 -2.7883 -2.1765 36 1 2.6747 -2.8016 -1.7380 37 1 2.1138 -5.3742 -2.7047 38 1 3.5358 -4.6823 -3.5572 39 1 3.3086 -7.3728 -2.0917 40 1 4.0658 -7.0300 -3.6832 41 1 6.0172 -6.2116 -2.7097 42 1 5.4914 -7.1517 -1.2867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052865402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:41 Heat of formation + Delta-G solvation = -17.723146 kcal Electronic energy + Delta-G solvation = -21708.404920 eV Core-core repulsion = 18653.162618 eV Total energy + Delta-G solvation = -3055.242302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.41066 -38.77213 -36.29685 -32.55721 -32.05308 -31.39260 -30.50977 -29.81858 -27.61272 -25.56549 -23.61367 -22.21951 -21.65486 -21.07121 -20.73276 -19.71676 -16.98433 -16.47065 -16.29415 -15.85092 -15.02039 -14.77805 -14.56412 -14.42179 -14.15020 -13.66653 -13.23151 -13.01786 -12.84602 -12.56860 -12.35562 -12.09612 -11.94943 -11.70462 -11.49998 -11.30530 -11.06100 -10.87934 -10.69765 -10.63881 -10.54792 -10.41345 -9.90771 -9.79789 -9.29668 -9.17446 -8.57413 -8.44643 -8.28684 -7.32739 -6.04083 -4.00181 1.79249 1.84147 3.28172 3.36427 3.39157 4.03531 4.18443 4.43435 4.63649 4.78134 4.94451 5.16812 5.26927 5.28501 5.29591 5.37949 5.46448 5.50008 5.56641 5.72359 5.76462 5.79340 5.86121 5.93943 5.97814 6.01525 6.08405 6.17958 6.28329 6.42096 6.47538 6.56023 6.64716 6.86017 6.88841 6.90164 7.02675 7.17038 7.32934 7.44278 7.66834 7.97468 8.09604 8.69163 9.05107 9.58885 11.09113 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.007925 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.019228 B = 3532.351175 C = 5683.006843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.872 3.128 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.157 3.843 10 N -0.518 5.518 11 C 0.082 3.918 12 C -0.056 4.056 13 C -0.110 4.110 14 C -0.124 4.124 15 C -0.130 4.130 16 C -0.127 4.127 17 C -0.098 4.098 18 C 0.064 3.936 19 C 0.089 3.911 20 H 0.079 0.921 21 C -0.151 4.151 22 C -0.155 4.155 23 C 0.049 3.951 24 O -0.378 6.378 25 H 0.263 0.737 26 H 0.036 0.964 27 H -0.019 1.019 28 H 0.099 0.901 29 H 0.027 0.973 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.027 0.973 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.997 -9.840 -0.937 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.099 0.901 9 C 0.031 3.969 10 N -0.241 5.241 11 C -0.046 4.046 12 C -0.057 4.057 13 C -0.129 4.129 14 C -0.142 4.142 15 C -0.149 4.149 16 C -0.145 4.145 17 C -0.116 4.116 18 C -0.065 4.065 19 C 0.031 3.969 20 H 0.097 0.903 21 C -0.190 4.190 22 C -0.193 4.193 23 C -0.027 4.027 24 O -0.298 6.298 25 H 0.073 0.927 26 H 0.053 0.947 27 H -0.001 1.001 28 H 0.117 0.883 29 H 0.045 0.955 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.046 0.954 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.751 -9.886 -0.471 15.364 hybrid contribution 0.486 1.408 -0.697 1.645 sum 12.237 -8.477 -1.168 14.932 Atomic orbital electron populations 1.69893 1.06080 1.26742 1.51289 1.24883 0.94692 0.98740 0.94941 0.86904 0.80509 0.84249 0.78386 1.20432 1.21185 1.19157 1.21036 0.88790 0.94615 1.50011 0.90148 1.20294 0.96975 0.84167 0.95476 1.61860 1.10764 1.23162 1.28334 1.21299 0.90363 1.01931 0.91003 1.19868 0.96790 0.92858 0.96181 1.21106 0.99446 0.96849 0.95495 1.21034 1.01029 0.98460 0.93708 1.21004 1.01799 0.92984 0.99087 1.21054 1.01095 0.96874 0.95473 1.20986 0.98881 0.98746 0.93025 1.22218 1.02510 0.91409 0.90317 1.23178 0.82549 0.95065 0.96083 0.90271 1.23272 1.01563 0.95399 0.98724 1.23095 0.96769 0.98110 1.01283 1.23055 0.96958 0.87933 0.94782 1.88404 1.30200 1.39472 1.71757 0.92740 0.94652 1.00095 0.88327 0.95522 0.86676 0.86720 0.86828 0.86694 0.86157 0.95432 0.87826 0.89752 0.90560 0.90758 0.90571 0.92081 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.72 27.37 -169.99 -4.65 17.07 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.42 6.69 56.52 0.38 -6.04 16 7 C -0.51 -14.33 8.67 -34.44 -0.30 -14.63 16 8 H 0.08 2.47 7.84 -52.49 -0.41 2.05 16 9 C 0.16 3.85 3.61 -4.98 -0.02 3.83 16 10 N -0.52 -11.00 4.35 -237.52 -1.03 -12.04 16 11 C 0.08 1.52 4.94 -4.97 -0.02 1.50 16 12 C -0.06 -1.03 5.07 -104.62 -0.53 -1.56 16 13 C -0.11 -1.98 8.11 -39.58 -0.32 -2.30 16 14 C -0.12 -1.98 10.05 -39.58 -0.40 -2.37 16 15 C -0.13 -1.92 10.05 -39.58 -0.40 -2.31 16 16 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 17 C -0.10 -1.63 9.70 -39.58 -0.38 -2.01 16 18 C 0.06 1.21 4.67 -3.83 -0.02 1.19 16 19 C 0.09 1.41 3.62 -25.71 -0.09 1.32 16 20 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 21 C -0.15 -1.92 6.57 -24.49 -0.16 -2.09 16 22 C -0.15 -1.62 7.02 -24.76 -0.17 -1.79 16 23 C 0.05 0.58 7.80 37.91 0.30 0.87 16 24 O -0.38 -5.83 8.39 -35.23 -0.30 -6.12 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.04 0.89 5.06 -51.93 -0.26 0.63 16 27 H -0.02 -0.46 7.25 -51.93 -0.38 -0.84 16 28 H 0.10 1.75 5.14 -51.93 -0.27 1.48 16 29 H 0.03 0.49 7.99 -51.93 -0.41 0.08 16 30 H 0.12 2.07 7.70 -52.49 -0.40 1.66 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 35 H 0.03 0.51 7.98 -51.93 -0.41 0.09 16 36 H 0.10 2.17 6.74 -51.93 -0.35 1.82 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 0.94 8.06 -51.93 -0.42 0.53 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -31.01 333.54 -9.91 -40.92 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.71 Total: 2.68 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -3.02 Total: -20.75 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.26 Total: -38.81 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.30 Total: -6.12 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.65 Total: 17.07 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.01 -9.91 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052865402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.192 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds