Wall clock time and date at job start Mon Mar 30 2020 01:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 120.00075 * 2 1 4 4 H 1.48502 * 109.46876 * 269.99795 * 3 2 1 5 5 H 1.48501 * 109.46722 * 29.99857 * 3 2 1 6 6 H 1.48495 * 109.46942 * 149.99859 * 3 2 1 7 7 C 1.37873 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00327 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99947 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47383 * 185.20862 * 9 7 2 11 11 C 1.46905 * 111.00099 * 190.93783 * 10 9 7 12 12 C 1.50699 * 109.46949 * 72.30221 * 11 10 9 13 13 C 1.38235 * 120.00171 * 269.72617 * 12 11 10 14 14 C 1.38235 * 120.00086 * 179.81688 * 13 12 11 15 15 C 1.38241 * 120.00073 * 0.39038 * 14 13 12 16 16 C 1.38238 * 119.99702 * 359.86400 * 15 14 13 17 17 C 1.38234 * 120.00183 * 359.95275 * 16 15 14 18 18 C 1.46900 * 111.00117 * 66.98017 * 10 9 7 19 19 C 1.52997 * 109.47518 * 201.15611 * 18 10 9 20 20 H 1.09006 * 110.27474 * 51.48810 * 19 18 10 21 21 C 1.54937 * 110.31252 * 173.57740 * 19 18 10 22 22 C 1.55306 * 100.98147 * 155.33641 * 21 19 18 23 23 C 1.54432 * 102.23148 * 325.92646 * 22 21 19 24 24 O 1.43243 * 107.60765 * 21.28968 * 23 22 21 25 25 H 0.96999 * 119.99578 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46972 * 65.21109 * 9 7 2 27 27 H 1.08998 * 109.47639 * 305.21179 * 9 7 2 28 28 H 1.08998 * 109.46588 * 192.30048 * 11 10 9 29 29 H 1.08998 * 109.47073 * 312.30221 * 11 10 9 30 30 H 1.07996 * 119.99592 * 359.97438 * 13 12 11 31 31 H 1.07996 * 120.00012 * 180.22850 * 14 13 12 32 32 H 1.07997 * 120.00107 * 179.83421 * 15 14 13 33 33 H 1.07997 * 119.99873 * 179.97438 * 16 15 14 34 34 H 1.08004 * 120.00207 * 180.02562 * 17 16 15 35 35 H 1.09001 * 109.46784 * 81.15596 * 18 10 9 36 36 H 1.08994 * 109.46962 * 321.16063 * 18 10 9 37 37 H 1.08995 * 111.12859 * 273.28046 * 21 19 18 38 38 H 1.09001 * 111.12298 * 37.40218 * 21 19 18 39 39 H 1.09003 * 110.84434 * 84.08540 * 22 21 19 40 40 H 1.09004 * 110.85153 * 207.69518 * 22 21 19 41 41 H 1.09002 * 109.78813 * 261.79579 * 23 22 21 42 42 H 1.08999 * 109.85580 * 140.82805 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5734 -0.1250 11 6 5.4463 -2.6442 0.1293 12 6 5.7077 -2.4470 1.6003 13 6 5.9216 -1.1760 2.1000 14 6 6.1576 -0.9947 3.4499 15 6 6.1877 -2.0853 4.2989 16 6 5.9789 -3.3568 3.7983 17 6 5.7392 -3.5377 2.4490 18 6 3.6705 -3.1321 -1.4428 19 6 3.7006 -4.6601 -1.3712 20 1 3.0890 -5.0114 -0.5401 21 6 3.1989 -5.2709 -2.7038 22 6 3.8934 -6.6597 -2.6726 23 6 5.2298 -6.3414 -1.9672 24 8 5.0520 -5.1261 -1.2302 25 1 -0.4849 0.8401 -0.0004 26 1 3.8752 -0.7626 0.9325 27 1 3.8746 -0.6021 -0.8402 28 1 5.8220 -3.6198 -0.1789 29 1 5.9536 -1.8637 -0.4377 30 1 5.9019 -0.3244 1.4361 31 1 6.3211 -0.0014 3.8409 32 1 6.3747 -1.9439 5.3532 33 1 6.0028 -4.2089 4.4615 34 1 5.5756 -4.5311 2.0580 35 1 4.3997 -2.7883 -2.1765 36 1 2.6747 -2.8016 -1.7380 37 1 2.1138 -5.3742 -2.7047 38 1 3.5358 -4.6823 -3.5572 39 1 3.3086 -7.3728 -2.0917 40 1 4.0658 -7.0300 -3.6832 41 1 6.0172 -6.2116 -2.7097 42 1 5.4914 -7.1517 -1.2867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052865402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:40 Heat of formation + Delta-G solvation = -36.422645 kcal Electronic energy + Delta-G solvation = -21709.215791 eV Core-core repulsion = 18653.162618 eV Total energy + Delta-G solvation = -3056.053173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66485 -39.97903 -37.86027 -34.70590 -33.20095 -32.62520 -31.78260 -31.28940 -29.36823 -26.87216 -25.30770 -23.48907 -22.94225 -22.30864 -22.00872 -21.30966 -19.02204 -17.77698 -17.50984 -17.09296 -16.52106 -16.26785 -15.98857 -15.83520 -15.54851 -15.30030 -14.50103 -14.37660 -14.21373 -14.17236 -13.73944 -13.61700 -13.38627 -13.09271 -12.93635 -12.65240 -12.58201 -12.36115 -12.11840 -11.89105 -11.86310 -11.76046 -11.64566 -11.44297 -11.29576 -10.78422 -10.38651 -9.71768 -9.57668 -9.01322 -8.29066 -6.30476 0.53175 0.59312 1.30032 1.32473 1.43385 2.32432 2.84818 2.94207 3.05214 3.35923 3.66044 3.97840 4.00170 4.06575 4.08136 4.23429 4.25157 4.33479 4.33780 4.43925 4.53094 4.68237 4.73269 4.76509 4.81311 4.83112 4.90708 4.91503 4.97920 5.04279 5.14866 5.17673 5.23763 5.27472 5.36470 5.54945 5.65039 5.67429 5.83461 6.01040 6.19230 6.23211 6.40483 6.65649 6.74853 7.32717 8.87392 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.007925 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.019228 B = 3532.351175 C = 5683.006843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.509 4.509 8 H 0.040 0.960 9 C 0.171 3.829 10 N -0.531 5.531 11 C 0.089 3.911 12 C -0.082 4.082 13 C -0.134 4.134 14 C -0.131 4.131 15 C -0.128 4.128 16 C -0.126 4.126 17 C -0.110 4.110 18 C 0.066 3.934 19 C 0.095 3.905 20 H 0.059 0.941 21 C -0.150 4.150 22 C -0.144 4.144 23 C 0.041 3.959 24 O -0.396 6.396 25 H 0.266 0.734 26 H 0.032 0.968 27 H -0.020 1.020 28 H 0.108 0.892 29 H 0.024 0.976 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.975 -10.390 -0.363 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.044 3.956 10 N -0.254 5.254 11 C -0.038 4.038 12 C -0.082 4.082 13 C -0.152 4.152 14 C -0.149 4.149 15 C -0.146 4.146 16 C -0.143 4.143 17 C -0.129 4.129 18 C -0.062 4.062 19 C 0.038 3.962 20 H 0.077 0.923 21 C -0.188 4.188 22 C -0.181 4.181 23 C -0.035 4.035 24 O -0.316 6.316 25 H 0.075 0.925 26 H 0.050 0.950 27 H -0.003 1.003 28 H 0.125 0.875 29 H 0.042 0.958 30 H 0.124 0.876 31 H 0.154 0.846 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.750 -10.462 0.094 17.277 hybrid contribution -0.124 1.461 -0.836 1.688 sum 13.626 -9.000 -0.742 16.347 Atomic orbital electron populations 1.70035 1.07873 1.27942 1.52723 1.25734 0.95516 1.02674 0.94544 0.85854 0.79571 0.79354 0.79088 1.19271 1.20520 1.17743 1.21209 0.90844 0.93222 1.49513 0.94134 1.19998 0.94325 0.86277 0.95025 1.61820 1.12801 1.21084 1.29690 1.21264 0.88353 1.02251 0.91910 1.19943 0.98516 0.93777 0.96010 1.21196 1.00937 0.96460 0.96647 1.21357 1.00397 1.00146 0.93006 1.21435 1.00142 0.92361 1.00631 1.21444 0.99593 0.98275 0.95032 1.21153 0.99258 0.98489 0.93977 1.22174 1.00816 0.93758 0.89480 1.22897 0.83170 0.92822 0.97325 0.92306 1.23257 1.01896 0.96839 0.96789 1.23082 0.95628 0.96573 1.02811 1.23321 0.98074 0.86808 0.95320 1.88351 1.29372 1.41259 1.72648 0.92479 0.95019 1.00280 0.87452 0.95817 0.87621 0.84625 0.83454 0.83641 0.85791 0.94874 0.90762 0.89609 0.90131 0.89993 0.87998 0.90626 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.47 13.96 21.45 0.30 -59.17 16 2 C 0.01 0.76 5.47 84.65 0.46 1.22 16 3 Si 0.94 45.12 27.37 68.60 1.88 46.99 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.25 -11.57 6.69 99.48 0.67 -10.90 16 7 C -0.51 -30.00 8.67 25.60 0.22 -29.78 16 8 H 0.04 2.64 7.84 -2.91 -0.02 2.62 16 9 C 0.17 8.56 3.61 85.56 0.31 8.87 16 10 N -0.53 -23.23 4.35 -905.38 -3.94 -27.17 16 11 C 0.09 3.37 4.94 85.56 0.42 3.79 16 12 C -0.08 -2.98 5.07 -19.86 -0.10 -3.08 16 13 C -0.13 -4.74 8.11 22.27 0.18 -4.56 16 14 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 15 C -0.13 -3.37 10.05 22.27 0.22 -3.14 16 16 C -0.13 -3.43 10.05 22.27 0.22 -3.20 16 17 C -0.11 -3.57 9.70 22.27 0.22 -3.35 16 18 C 0.07 2.60 4.67 86.30 0.40 3.00 16 19 C 0.10 3.10 3.62 31.26 0.11 3.21 16 20 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 21 C -0.15 -3.71 6.57 32.05 0.21 -3.49 16 22 C -0.14 -2.66 7.02 31.87 0.22 -2.44 16 23 C 0.04 0.86 7.80 72.47 0.56 1.43 16 24 O -0.40 -11.91 8.39 -148.98 -1.25 -13.16 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.03 1.62 5.06 -2.39 -0.01 1.61 16 27 H -0.02 -1.02 7.25 -2.39 -0.02 -1.04 16 28 H 0.11 3.82 5.14 -2.39 -0.01 3.81 16 29 H 0.02 0.89 7.99 -2.39 -0.02 0.87 16 30 H 0.11 3.82 7.70 -2.91 -0.02 3.80 16 31 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 32 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.03 1.24 7.98 -2.39 -0.02 1.22 16 36 H 0.07 3.32 6.74 -2.39 -0.02 3.31 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 1.92 8.06 -2.39 -0.02 1.90 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -68.87 333.54 1.82 -67.05 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.94 Total: 20.69 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 3.90 Total: -35.23 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -3.64 Total: -86.34 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.25 Total: -13.16 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 46.99 kcal Total: -68.87 1.82 -67.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052865402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.622 kcal (2) G-P(sol) polarization free energy of solvation -68.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds