Wall clock time and date at job start Mon Mar 30 2020 01:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00017 * 2 1 4 4 H 1.48505 * 109.46927 * 270.00059 * 3 2 1 5 5 H 1.48494 * 109.47064 * 29.99790 * 3 2 1 6 6 H 1.48500 * 109.46981 * 150.00024 * 3 2 1 7 7 C 1.37877 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00309 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99991 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47213 * 179.97438 * 9 7 2 11 11 C 1.46851 * 111.00015 * 169.99898 * 10 9 7 12 12 C 1.53032 * 109.52311 * 185.84114 * 11 10 9 13 13 C 1.53121 * 109.27630 * 300.82199 * 12 11 10 14 14 C 1.53001 * 109.52435 * 177.55998 * 13 12 11 15 15 O 1.42902 * 109.47386 * 175.12467 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 C 1.53116 * 109.21527 * 57.61975 * 13 12 11 23 23 C 1.46841 * 110.99710 * 294.21068 * 10 9 7 24 24 H 0.97002 * 119.99691 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99402 * 9 7 2 26 26 H 1.09005 * 109.47029 * 299.99984 * 9 7 2 27 27 H 1.08999 * 109.46005 * 65.82170 * 11 10 9 28 28 H 1.09004 * 109.44900 * 305.85201 * 11 10 9 29 29 H 1.08997 * 109.50530 * 180.88018 * 12 11 10 30 30 H 1.09003 * 109.50590 * 60.75813 * 12 11 10 31 31 H 1.09001 * 109.52383 * 297.68663 * 13 12 11 32 32 H 1.08999 * 109.46920 * 55.12220 * 14 13 12 33 33 H 1.08998 * 109.47220 * 295.12591 * 14 13 12 34 34 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 35 35 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 37 37 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 39 39 H 1.09011 * 109.49995 * 62.32101 * 22 13 12 40 40 H 1.09000 * 109.50341 * 182.43409 * 22 13 12 41 41 H 1.09005 * 109.46565 * 294.16996 * 23 10 9 42 42 H 1.08995 * 109.47022 * 54.15646 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 5.4497 -2.6251 -0.2376 12 6 5.8992 -4.0814 -0.3759 13 6 5.5488 -4.8425 0.9057 14 6 5.9407 -6.3133 0.7503 15 8 5.7187 -6.9984 1.9846 16 6 6.0189 -8.3234 2.0174 17 6 5.8284 -9.0503 3.1836 18 6 6.1338 -10.3972 3.2142 19 6 6.6294 -11.0208 2.0840 20 6 6.8198 -10.2986 0.9204 21 6 6.5159 -8.9515 0.8847 22 6 4.0421 -4.7382 1.1577 23 6 3.6461 -3.2628 1.2500 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6807 0.8905 26 1 3.8752 -0.6796 -0.8895 27 1 5.9701 -2.1624 0.6009 28 1 5.6846 -2.0838 -1.1541 29 1 6.9767 -4.1160 -0.5367 30 1 5.3894 -4.5408 -1.2228 31 1 6.0896 -4.4083 1.7466 32 1 6.9947 -6.3819 0.4811 33 1 5.3352 -6.7699 -0.0326 34 1 5.4458 -8.5626 4.0680 35 1 5.9860 -10.9635 4.1219 36 1 6.8679 -12.0738 2.1101 37 1 7.2066 -10.7880 0.0389 38 1 6.6651 -8.3877 -0.0244 39 1 3.5023 -5.2083 0.3355 40 1 3.7937 -5.2419 2.0919 41 1 4.1751 -2.7972 2.0816 42 1 2.5714 -3.1850 1.4139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055081256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:10 Heat of formation + Delta-G solvation = -19.594077 kcal Electronic energy + Delta-G solvation = -20697.513395 eV Core-core repulsion = 17642.189963 eV Total energy + Delta-G solvation = -3055.323432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.29628 -38.64594 -37.33475 -34.12238 -32.24271 -31.21034 -30.45308 -30.00889 -28.40307 -26.07753 -23.27252 -22.78656 -22.48534 -21.60413 -20.57725 -19.36778 -18.30939 -16.75401 -16.28662 -15.96541 -15.95094 -15.16745 -14.62359 -14.38997 -14.14393 -14.02099 -13.61148 -13.44126 -13.36673 -12.84690 -12.63205 -12.40722 -12.18554 -11.88264 -11.79804 -11.48267 -11.15064 -11.08559 -10.79749 -10.77825 -10.53653 -10.37125 -10.03520 -9.91878 -9.76502 -9.23008 -9.21464 -8.56157 -8.35861 -7.34634 -6.04589 -4.01806 1.12931 1.26411 3.08617 3.28518 3.35988 3.38006 3.59876 4.42370 4.59271 4.66740 4.71370 4.84585 4.88083 4.91514 5.03484 5.15380 5.18620 5.27474 5.35364 5.43445 5.47175 5.59150 5.71537 5.78894 5.82181 5.95548 6.09360 6.11996 6.14795 6.20342 6.25919 6.29391 6.31845 6.42525 6.59404 6.68450 6.71168 6.90098 7.02280 7.32359 7.61072 7.93158 8.09067 8.67264 9.04099 9.57259 11.08533 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042147 B = 0.003008 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.178599 B = 9305.800197 C = 9634.443939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.162 3.838 10 N -0.528 5.528 11 C 0.054 3.946 12 C -0.105 4.105 13 C -0.086 4.086 14 C 0.067 3.933 15 O -0.310 6.310 16 C 0.136 3.864 17 C -0.156 4.156 18 C -0.082 4.082 19 C -0.166 4.166 20 C -0.081 4.081 21 C -0.212 4.212 22 C -0.108 4.108 23 C 0.064 3.936 24 H 0.263 0.737 25 H -0.012 1.012 26 H 0.024 0.976 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.740 -18.339 3.248 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.036 3.964 10 N -0.253 5.253 11 C -0.074 4.074 12 C -0.143 4.143 13 C -0.104 4.104 14 C -0.008 4.008 15 O -0.223 6.223 16 C 0.090 3.910 17 C -0.175 4.175 18 C -0.100 4.100 19 C -0.184 4.184 20 C -0.099 4.099 21 C -0.230 4.230 22 C -0.146 4.146 23 C -0.064 4.064 24 H 0.073 0.927 25 H 0.005 0.995 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.037 0.963 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.269 -18.312 3.009 24.032 hybrid contribution 0.877 1.358 0.370 1.658 sum 16.146 -16.954 3.379 23.654 Atomic orbital electron populations 1.69896 1.06115 1.26811 1.51152 1.24906 0.94738 0.98847 0.94890 0.86865 0.80294 0.84052 0.78562 1.20159 1.21217 1.19315 1.21045 0.88742 0.94722 1.50193 0.90100 1.20159 0.97092 0.84191 0.94994 1.61871 1.10184 1.18730 1.34510 1.22011 0.90221 0.95080 1.00121 1.21545 0.99832 0.96053 0.96912 1.21250 0.98413 0.91473 0.99290 1.22977 1.00196 0.93031 0.84638 1.86103 1.81008 1.18526 1.36707 1.19102 0.94167 0.83522 0.94197 1.20496 1.05786 0.94082 0.97097 1.20966 0.96998 0.93623 0.98413 1.21039 1.03707 1.00112 0.93539 1.20950 0.97595 0.93388 0.97982 1.21316 1.06811 0.96483 0.98422 1.21648 0.93603 0.97477 1.01908 1.21972 1.02308 0.92166 0.89963 0.92678 0.99477 0.95830 0.95982 0.91154 0.92087 0.90861 0.90664 0.92310 0.91773 0.85204 0.85517 0.86114 0.85954 0.85445 0.91343 0.91567 0.96286 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.51 -14.52 8.98 -34.44 -0.31 -14.83 16 8 H 0.08 2.51 7.36 -52.49 -0.39 2.12 16 9 C 0.16 3.96 3.79 -4.97 -0.02 3.94 16 10 N -0.53 -11.05 4.65 -236.11 -1.10 -12.15 16 11 C 0.05 0.91 5.46 -3.83 -0.02 0.89 16 12 C -0.11 -1.40 5.38 -26.65 -0.14 -1.54 16 13 C -0.09 -1.14 2.49 -90.50 -0.23 -1.37 16 14 C 0.07 0.77 4.13 37.16 0.15 0.92 16 15 O -0.31 -4.05 9.73 -19.42 -0.19 -4.24 16 16 C 0.14 1.63 6.69 -39.22 -0.26 1.36 16 17 C -0.16 -1.68 9.99 -39.43 -0.39 -2.07 16 18 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 19 C -0.17 -1.42 10.04 -39.56 -0.40 -1.82 16 20 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 21 C -0.21 -2.21 9.04 -39.44 -0.36 -2.57 16 22 C -0.11 -1.71 5.25 -26.65 -0.14 -1.85 16 23 C 0.06 1.24 5.29 -3.83 -0.02 1.22 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H -0.01 -0.31 7.18 -51.93 -0.37 -0.68 16 26 H 0.02 0.57 7.41 -51.93 -0.38 0.19 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 1.14 8.02 -51.93 -0.42 0.73 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.58 7.66 -51.93 -0.40 0.19 16 33 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.13 1.17 6.30 -52.48 -0.33 0.84 16 39 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 40 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 1.98 6.70 -51.93 -0.35 1.63 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -31.23 334.23 -10.01 -41.24 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.84 Total: -1.77 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -3.03 Total: -18.11 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.32 Total: -39.08 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.19 Total: -4.24 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.23 -10.01 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055081256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.645 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds