Wall clock time and date at job start Mon Mar 30 2020 01:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00017 * 2 1 4 4 H 1.48505 * 109.46927 * 270.00059 * 3 2 1 5 5 H 1.48494 * 109.47064 * 29.99790 * 3 2 1 6 6 H 1.48500 * 109.46981 * 150.00024 * 3 2 1 7 7 C 1.37877 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00309 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99991 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.47213 * 179.97438 * 9 7 2 11 11 C 1.46851 * 111.00015 * 169.99898 * 10 9 7 12 12 C 1.53032 * 109.52311 * 185.84114 * 11 10 9 13 13 C 1.53121 * 109.27630 * 300.82199 * 12 11 10 14 14 C 1.53001 * 109.52435 * 177.55998 * 13 12 11 15 15 O 1.42902 * 109.47386 * 175.12467 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 C 1.53116 * 109.21527 * 57.61975 * 13 12 11 23 23 C 1.46841 * 110.99710 * 294.21068 * 10 9 7 24 24 H 0.97002 * 119.99691 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99402 * 9 7 2 26 26 H 1.09005 * 109.47029 * 299.99984 * 9 7 2 27 27 H 1.08999 * 109.46005 * 65.82170 * 11 10 9 28 28 H 1.09004 * 109.44900 * 305.85201 * 11 10 9 29 29 H 1.08997 * 109.50530 * 180.88018 * 12 11 10 30 30 H 1.09003 * 109.50590 * 60.75813 * 12 11 10 31 31 H 1.09001 * 109.52383 * 297.68663 * 13 12 11 32 32 H 1.08999 * 109.46920 * 55.12220 * 14 13 12 33 33 H 1.08998 * 109.47220 * 295.12591 * 14 13 12 34 34 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 35 35 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 37 37 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 39 39 H 1.09011 * 109.49995 * 62.32101 * 22 13 12 40 40 H 1.09000 * 109.50341 * 182.43409 * 22 13 12 41 41 H 1.09005 * 109.46565 * 294.16996 * 23 10 9 42 42 H 1.08995 * 109.47022 * 54.15646 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 5.4497 -2.6251 -0.2376 12 6 5.8992 -4.0814 -0.3759 13 6 5.5488 -4.8425 0.9057 14 6 5.9407 -6.3133 0.7503 15 8 5.7187 -6.9984 1.9846 16 6 6.0189 -8.3234 2.0174 17 6 5.8284 -9.0503 3.1836 18 6 6.1338 -10.3972 3.2142 19 6 6.6294 -11.0208 2.0840 20 6 6.8198 -10.2986 0.9204 21 6 6.5159 -8.9515 0.8847 22 6 4.0421 -4.7382 1.1577 23 6 3.6461 -3.2628 1.2500 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6807 0.8905 26 1 3.8752 -0.6796 -0.8895 27 1 5.9701 -2.1624 0.6009 28 1 5.6846 -2.0838 -1.1541 29 1 6.9767 -4.1160 -0.5367 30 1 5.3894 -4.5408 -1.2228 31 1 6.0896 -4.4083 1.7466 32 1 6.9947 -6.3819 0.4811 33 1 5.3352 -6.7699 -0.0326 34 1 5.4458 -8.5626 4.0680 35 1 5.9860 -10.9635 4.1219 36 1 6.8679 -12.0738 2.1101 37 1 7.2066 -10.7880 0.0389 38 1 6.6651 -8.3877 -0.0244 39 1 3.5023 -5.2083 0.3355 40 1 3.7937 -5.2419 2.0919 41 1 4.1751 -2.7972 2.0816 42 1 2.5714 -3.1850 1.4139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055081256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:09 Heat of formation + Delta-G solvation = -38.591574 kcal Electronic energy + Delta-G solvation = -20698.337188 eV Core-core repulsion = 17642.189963 eV Total energy + Delta-G solvation = -3056.147225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13681 -39.90760 -38.25448 -35.69740 -34.21965 -31.93711 -31.77713 -30.93571 -29.95573 -27.50893 -24.54568 -24.05420 -23.41133 -22.80682 -21.98898 -20.64267 -19.16292 -18.87581 -17.14387 -17.01755 -16.79709 -16.56231 -16.12199 -15.79822 -15.30966 -15.07577 -14.95925 -14.67103 -14.44347 -14.29929 -14.03239 -13.66008 -13.42395 -13.33831 -12.99350 -12.59048 -12.44437 -12.42071 -12.12121 -11.96041 -11.94120 -11.80332 -11.59220 -11.48049 -11.28788 -11.04442 -10.78370 -9.92267 -9.12839 -9.01865 -8.29414 -6.32995 0.42347 0.53024 1.33566 1.35347 1.46069 2.24378 2.33423 2.88304 3.03276 3.22419 3.70946 3.76442 3.92558 3.95694 4.04166 4.27208 4.30445 4.32107 4.36808 4.41920 4.53775 4.54597 4.61374 4.68267 4.74046 4.78380 4.81711 4.89984 5.00121 5.04512 5.10717 5.12872 5.21338 5.24882 5.40314 5.45070 5.51557 5.53715 5.63134 5.91368 6.00076 6.38373 6.51309 6.67870 6.73575 7.30717 8.87345 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042147 B = 0.003008 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.178599 B = 9305.800197 C = 9634.443939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.517 4.517 8 H 0.036 0.964 9 C 0.171 3.829 10 N -0.544 5.544 11 C 0.049 3.951 12 C -0.097 4.097 13 C -0.079 4.079 14 C 0.072 3.928 15 O -0.331 6.331 16 C 0.109 3.891 17 C -0.176 4.176 18 C -0.085 4.085 19 C -0.167 4.167 20 C -0.086 4.086 21 C -0.221 4.221 22 C -0.098 4.098 23 C 0.067 3.933 24 H 0.267 0.733 25 H -0.016 1.016 26 H 0.031 0.969 27 H 0.027 0.973 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.128 0.872 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.019 0.981 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.842 -19.220 2.758 27.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.044 3.956 10 N -0.269 5.269 11 C -0.079 4.079 12 C -0.134 4.134 13 C -0.098 4.098 14 C -0.003 4.003 15 O -0.246 6.246 16 C 0.064 3.936 17 C -0.194 4.194 18 C -0.103 4.103 19 C -0.185 4.185 20 C -0.104 4.104 21 C -0.240 4.240 22 C -0.136 4.136 23 C -0.061 4.061 24 H 0.076 0.924 25 H 0.002 0.998 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.168 0.832 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.037 0.963 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 18.394 -19.222 2.516 26.723 hybrid contribution -0.143 1.484 0.554 1.591 sum 18.251 -17.738 3.070 25.634 Atomic orbital electron populations 1.70057 1.08159 1.28137 1.52607 1.25882 0.95642 1.03246 0.94343 0.85680 0.79212 0.78456 0.79371 1.18708 1.20728 1.17663 1.21277 0.91180 0.93217 1.49889 0.94576 1.19927 0.94215 0.86573 0.94907 1.61792 1.13457 1.16582 1.35099 1.22187 0.87180 0.97914 1.00586 1.21509 1.02017 0.93329 0.96592 1.21158 0.95885 0.93226 0.99497 1.22899 1.01565 0.91408 0.84417 1.86052 1.81721 1.19444 1.37351 1.19368 0.95731 0.83226 0.95305 1.20720 1.06576 0.95103 0.97046 1.21297 0.96250 0.93025 0.99694 1.21432 1.02524 1.01409 0.93088 1.21318 0.97000 0.92986 0.99126 1.21525 1.06798 0.97329 0.98315 1.21527 0.95947 0.94386 1.01771 1.21882 0.99856 0.94672 0.89661 0.92407 0.99814 0.95055 0.95467 0.90362 0.88362 0.90877 0.90657 0.90000 0.91443 0.85381 0.83217 0.83538 0.83560 0.84420 0.92151 0.91352 0.96281 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 2 C 0.01 0.35 5.47 84.65 0.46 0.82 16 3 Si 0.95 44.64 27.47 68.60 1.88 46.52 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 7 C -0.52 -30.67 8.98 25.60 0.23 -30.44 16 8 H 0.04 2.39 7.36 -2.91 -0.02 2.37 16 9 C 0.17 8.39 3.79 85.56 0.32 8.71 16 10 N -0.54 -22.90 4.65 -900.91 -4.19 -27.08 16 11 C 0.05 1.55 5.46 86.32 0.47 2.02 16 12 C -0.10 -2.30 5.38 30.65 0.16 -2.14 16 13 C -0.08 -1.98 2.49 -10.71 -0.03 -2.00 16 14 C 0.07 1.52 4.13 71.98 0.30 1.81 16 15 O -0.33 -8.41 9.73 -92.40 -0.90 -9.31 16 16 C 0.11 2.51 6.69 22.51 0.15 2.66 16 17 C -0.18 -3.68 9.99 22.37 0.22 -3.46 16 18 C -0.08 -1.37 10.04 22.25 0.22 -1.14 16 19 C -0.17 -2.42 10.04 22.28 0.22 -2.19 16 20 C -0.09 -1.34 10.04 22.25 0.22 -1.12 16 21 C -0.22 -4.22 9.04 22.36 0.20 -4.02 16 22 C -0.10 -3.13 5.25 30.65 0.16 -2.97 16 23 C 0.07 2.72 5.29 86.33 0.46 3.17 16 24 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 25 H -0.02 -0.78 7.18 -2.39 -0.02 -0.80 16 26 H 0.03 1.49 7.41 -2.38 -0.02 1.47 16 27 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 2.35 8.02 -2.39 -0.02 2.33 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 32 H 0.08 1.37 7.66 -2.39 -0.02 1.35 16 33 H 0.07 1.37 7.66 -2.39 -0.02 1.35 16 34 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.14 2.21 6.30 -2.91 -0.02 2.19 16 39 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.07 2.12 7.90 -2.39 -0.02 2.10 16 41 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.05 2.34 6.70 -2.39 -0.02 2.33 16 Total: -1.00 -70.32 334.23 1.80 -68.52 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.92 Total: 11.66 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 3.79 Total: -30.28 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -3.89 Total: -87.11 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.90 Total: -9.31 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -70.32 1.80 -68.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055081256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.925 kcal (2) G-P(sol) polarization free energy of solvation -70.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds