Wall clock time and date at job start Mon Mar 30 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38350 * 119.85415 * 2 1 4 4 C 1.37965 * 120.14580 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.07242 * 179.97438 * 4 3 2 6 6 C 1.39574 * 119.85189 * 359.97438 * 4 3 2 7 7 C 1.47848 * 120.14474 * 179.97438 * 6 4 3 8 8 O 1.21552 * 119.99706 * 89.99546 * 7 6 4 9 9 N 1.34774 * 119.99953 * 270.00277 * 7 6 4 10 10 C 1.46504 * 120.00071 * 359.97438 * 9 7 6 11 11 C 1.46498 * 119.99680 * 180.02562 * 9 7 6 12 12 H 1.09001 * 109.47378 * 359.97438 * 11 9 7 13 13 C 1.53001 * 109.47361 * 119.99781 * 11 9 7 14 14 C 1.50703 * 109.46593 * 239.99321 * 11 9 7 15 15 H 1.07994 * 120.00066 * 0.02562 * 14 11 9 16 16 C 1.37885 * 119.99688 * 180.02562 * 14 11 9 17 17 N 1.31507 * 120.00121 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99809 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47407 * 59.99503 * 18 16 14 20 20 H 1.48498 * 109.47166 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46765 * 299.99808 * 18 16 14 22 22 C 1.39581 * 119.71126 * 359.97438 * 6 4 3 23 23 C 1.50700 * 120.07013 * 179.97438 * 22 6 4 24 24 C 1.37951 * 119.85104 * 0.02562 * 22 6 4 25 25 H 1.09001 * 109.47346 * 90.00342 * 1 2 3 26 26 H 1.08997 * 109.47130 * 209.99834 * 1 2 3 27 27 H 1.08994 * 109.47612 * 330.00078 * 1 2 3 28 28 H 1.07998 * 119.92842 * 0.25653 * 3 2 1 29 29 H 1.09002 * 109.47062 * 89.99999 * 5 4 3 30 30 H 1.08997 * 109.46993 * 209.99780 * 5 4 3 31 31 H 1.08999 * 109.47699 * 330.00469 * 5 4 3 32 32 H 1.09004 * 109.46583 * 90.00577 * 10 9 7 33 33 H 1.08996 * 109.46995 * 210.00337 * 10 9 7 34 34 H 1.09002 * 109.46901 * 330.00574 * 10 9 7 35 35 H 1.09001 * 109.47377 * 59.99384 * 13 11 9 36 36 H 1.09000 * 109.47039 * 179.97438 * 13 11 9 37 37 H 1.09000 * 109.47007 * 299.99635 * 13 11 9 38 38 H 0.96999 * 120.00114 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.46748 * 90.00714 * 23 22 6 40 40 H 1.09000 * 109.46694 * 209.99793 * 23 22 6 41 41 H 1.08992 * 109.47335 * 330.00196 * 23 22 6 42 42 H 1.08005 * 119.92860 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.3238 2.5149 -0.0001 6 6 4.2762 -0.0001 0.0016 7 6 5.7547 -0.0001 0.0016 8 8 6.3624 0.0009 1.0543 9 7 6.4285 -0.0011 -1.1656 10 6 5.6960 -0.0027 -2.4343 11 6 7.8935 -0.0017 -1.1655 12 1 8.2569 -0.0008 -0.1378 13 6 8.4031 -1.2516 -1.8859 14 6 8.3963 1.2281 -1.8768 15 1 7.6947 1.9391 -2.2874 16 6 9.7520 1.4454 -2.0034 17 7 10.6062 0.5793 -1.5038 18 14 10.3752 2.9701 -2.8845 19 1 9.8812 4.1831 -2.1845 20 1 11.8602 2.9689 -2.8856 21 1 9.8796 2.9701 -4.2844 22 6 3.5752 -1.2071 0.0027 23 6 4.3238 -2.5150 0.0033 24 6 2.1957 -1.2000 0.0021 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6522 2.1331 0.0042 29 1 4.5039 2.8309 1.0275 30 1 5.2769 2.3878 -0.5134 31 1 3.7321 3.2720 -0.5145 32 1 5.5141 1.0246 -2.7501 33 1 6.2853 -0.5172 -3.1933 34 1 4.7438 -0.5167 -2.3034 35 1 8.0398 -1.2523 -2.9135 36 1 9.4931 -1.2518 -1.8862 37 1 8.0395 -2.1411 -1.3714 38 1 11.5600 0.7324 -1.5925 39 1 4.5046 -2.8297 1.0311 40 1 3.7316 -3.2728 -0.5098 41 1 5.2765 -2.3887 -0.5109 42 1 1.6521 -2.1333 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:44 Heat of formation + Delta-G solvation = -25.948435 kcal Electronic energy + Delta-G solvation = -21996.479455 eV Core-core repulsion = 18940.880478 eV Total energy + Delta-G solvation = -3055.598977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.16842 -38.17699 -35.26992 -33.53978 -33.45510 -32.60970 -29.48631 -27.87186 -27.07878 -26.61377 -25.99082 -25.18862 -22.22426 -20.65868 -20.32278 -18.49756 -16.81217 -16.30392 -15.96145 -15.65354 -14.70573 -14.36368 -14.05690 -13.90326 -13.82866 -13.15577 -12.99997 -12.88955 -12.81908 -12.57827 -12.56738 -12.43631 -12.13683 -11.60569 -11.54188 -11.50795 -11.21830 -11.10814 -11.04691 -10.86540 -10.80517 -10.69675 -10.25802 -10.15790 -9.18246 -9.01455 -8.47328 -8.43744 -8.32276 -7.57767 -6.06325 -4.14292 1.30983 1.46866 3.28390 3.32495 3.33701 3.38210 3.67457 4.04011 4.40858 4.79384 4.81642 4.90045 5.11025 5.24880 5.30103 5.32899 5.48215 5.54304 5.61994 5.68202 5.78218 5.80033 5.82808 5.89628 5.96496 6.06056 6.11718 6.24000 6.36171 6.44735 6.55856 6.58770 6.74077 6.77137 6.83220 7.05482 7.07345 7.44611 7.52645 7.72198 8.01966 8.19957 8.52825 8.83408 9.04917 9.52168 10.98955 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.005170 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.319015 B = 5414.810576 C = 5949.099888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.077 4.077 3 C -0.130 4.130 4 C -0.044 4.044 5 C -0.123 4.123 6 C -0.113 4.113 7 C 0.553 3.447 8 O -0.546 6.546 9 N -0.585 5.585 10 C 0.088 3.912 11 C 0.257 3.743 12 H 0.063 0.937 13 C -0.147 4.147 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.049 4.049 23 C -0.120 4.120 24 C -0.131 4.131 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.030 0.970 36 H 0.094 0.906 37 H 0.011 0.989 38 H 0.264 0.736 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.468 -2.388 -0.565 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.045 4.045 5 C -0.180 4.180 6 C -0.116 4.116 7 C 0.340 3.660 8 O -0.425 6.425 9 N -0.315 5.315 10 C -0.055 4.055 11 C 0.157 3.843 12 H 0.081 0.919 13 C -0.205 4.205 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.050 4.050 23 C -0.177 4.177 24 C -0.149 4.149 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.113 0.887 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.891 -2.424 -0.022 17.064 hybrid contribution 0.352 0.869 -0.599 1.113 sum -16.539 -1.555 -0.621 16.623 Atomic orbital electron populations 1.20774 0.91298 1.02592 1.02188 1.19912 0.95826 0.93037 0.98913 1.20762 0.93040 0.97529 1.03507 1.19893 0.93443 0.94375 0.96747 1.20896 1.00722 0.93378 1.02961 1.19941 0.94169 0.93298 1.04212 1.18178 0.86179 0.77148 0.84540 1.90747 1.69320 1.51219 1.31219 1.48245 1.09206 1.69802 1.04254 1.21533 0.95603 1.01126 0.87281 1.18967 0.72259 0.94139 0.98905 0.91880 1.22099 1.04754 0.95754 0.97936 1.21265 0.91756 1.06393 1.36922 0.92332 1.24882 0.96646 0.96680 0.95496 1.69863 1.02329 1.35308 1.45109 0.86562 0.77642 0.83229 0.79991 1.20248 1.21183 1.20249 1.19850 0.93487 0.94227 0.97387 1.20867 1.00364 0.93568 1.02894 1.20738 0.92999 0.97508 1.03703 0.91231 0.91663 0.91644 0.85962 0.90737 0.90379 0.91412 0.93387 0.90863 0.92896 0.95061 0.88735 0.96992 0.92637 0.90722 0.91348 0.90960 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16 2 C -0.08 -0.92 5.89 -104.54 -0.62 -1.54 16 3 C -0.13 -1.71 9.34 -39.64 -0.37 -2.08 16 4 C -0.04 -0.70 5.91 -104.23 -0.62 -1.32 16 5 C -0.12 -1.92 9.62 36.00 0.35 -1.57 16 6 C -0.11 -2.02 3.92 -104.97 -0.41 -2.43 16 7 C 0.55 12.10 4.04 -12.33 -0.05 12.05 16 8 O -0.55 -14.20 16.43 5.32 0.09 -14.11 16 9 N -0.58 -12.77 2.75 -176.37 -0.49 -13.25 16 10 C 0.09 1.59 9.50 59.85 0.57 2.16 16 11 C 0.26 6.60 2.64 -69.08 -0.18 6.42 16 12 H 0.06 1.88 6.90 -51.93 -0.36 1.53 16 13 C -0.15 -3.51 8.95 37.16 0.33 -3.18 16 14 C -0.52 -14.16 8.37 -34.44 -0.29 -14.45 16 15 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.89 -25.09 11.32 55.43 0.63 -24.47 16 18 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.05 -0.75 5.48 -104.23 -0.57 -1.32 16 23 C -0.12 -1.72 9.62 36.01 0.35 -1.37 16 24 C -0.13 -1.68 9.34 -39.64 -0.37 -2.05 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.08 1.44 7.08 -51.93 -0.37 1.08 16 31 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.30 6.42 -51.93 -0.33 0.96 16 34 H 0.05 0.83 6.54 -51.93 -0.34 0.49 16 35 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 36 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 41 H 0.07 1.18 7.08 -51.93 -0.37 0.82 16 42 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -31.05 341.15 -7.87 -38.92 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.60 Total: 1.33 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.61 Total: -9.57 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.14 Total: -37.72 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.09 Total: -14.11 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.05 -7.87 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.975 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds