Wall clock time and date at job start Mon Mar 30 2020 02:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38350 * 119.85415 * 2 1 4 4 C 1.37965 * 120.14580 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.07242 * 179.97438 * 4 3 2 6 6 C 1.39574 * 119.85189 * 359.97438 * 4 3 2 7 7 C 1.47848 * 120.14474 * 179.97438 * 6 4 3 8 8 O 1.21552 * 119.99706 * 89.99546 * 7 6 4 9 9 N 1.34774 * 119.99953 * 270.00277 * 7 6 4 10 10 C 1.46504 * 120.00071 * 359.97438 * 9 7 6 11 11 C 1.46498 * 119.99680 * 180.02562 * 9 7 6 12 12 H 1.09001 * 109.47378 * 359.97438 * 11 9 7 13 13 C 1.53001 * 109.47361 * 119.99781 * 11 9 7 14 14 C 1.50703 * 109.46593 * 239.99321 * 11 9 7 15 15 H 1.07994 * 120.00066 * 0.02562 * 14 11 9 16 16 C 1.37885 * 119.99688 * 180.02562 * 14 11 9 17 17 N 1.31507 * 120.00121 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99809 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47407 * 59.99503 * 18 16 14 20 20 H 1.48498 * 109.47166 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46765 * 299.99808 * 18 16 14 22 22 C 1.39581 * 119.71126 * 359.97438 * 6 4 3 23 23 C 1.50700 * 120.07013 * 179.97438 * 22 6 4 24 24 C 1.37951 * 119.85104 * 0.02562 * 22 6 4 25 25 H 1.09001 * 109.47346 * 90.00342 * 1 2 3 26 26 H 1.08997 * 109.47130 * 209.99834 * 1 2 3 27 27 H 1.08994 * 109.47612 * 330.00078 * 1 2 3 28 28 H 1.07998 * 119.92842 * 0.25653 * 3 2 1 29 29 H 1.09002 * 109.47062 * 89.99999 * 5 4 3 30 30 H 1.08997 * 109.46993 * 209.99780 * 5 4 3 31 31 H 1.08999 * 109.47699 * 330.00469 * 5 4 3 32 32 H 1.09004 * 109.46583 * 90.00577 * 10 9 7 33 33 H 1.08996 * 109.46995 * 210.00337 * 10 9 7 34 34 H 1.09002 * 109.46901 * 330.00574 * 10 9 7 35 35 H 1.09001 * 109.47377 * 59.99384 * 13 11 9 36 36 H 1.09000 * 109.47039 * 179.97438 * 13 11 9 37 37 H 1.09000 * 109.47007 * 299.99635 * 13 11 9 38 38 H 0.96999 * 120.00114 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.46748 * 90.00714 * 23 22 6 40 40 H 1.09000 * 109.46694 * 209.99793 * 23 22 6 41 41 H 1.08992 * 109.47335 * 330.00196 * 23 22 6 42 42 H 1.08005 * 119.92860 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.3238 2.5149 -0.0001 6 6 4.2762 -0.0001 0.0016 7 6 5.7547 -0.0001 0.0016 8 8 6.3624 0.0009 1.0543 9 7 6.4285 -0.0011 -1.1656 10 6 5.6960 -0.0027 -2.4343 11 6 7.8935 -0.0017 -1.1655 12 1 8.2569 -0.0008 -0.1378 13 6 8.4031 -1.2516 -1.8859 14 6 8.3963 1.2281 -1.8768 15 1 7.6947 1.9391 -2.2874 16 6 9.7520 1.4454 -2.0034 17 7 10.6062 0.5793 -1.5038 18 14 10.3752 2.9701 -2.8845 19 1 9.8812 4.1831 -2.1845 20 1 11.8602 2.9689 -2.8856 21 1 9.8796 2.9701 -4.2844 22 6 3.5752 -1.2071 0.0027 23 6 4.3238 -2.5150 0.0033 24 6 2.1957 -1.2000 0.0021 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6522 2.1331 0.0042 29 1 4.5039 2.8309 1.0275 30 1 5.2769 2.3878 -0.5134 31 1 3.7321 3.2720 -0.5145 32 1 5.5141 1.0246 -2.7501 33 1 6.2853 -0.5172 -3.1933 34 1 4.7438 -0.5167 -2.3034 35 1 8.0398 -1.2523 -2.9135 36 1 9.4931 -1.2518 -1.8862 37 1 8.0395 -2.1411 -1.3714 38 1 11.5600 0.7324 -1.5925 39 1 4.5046 -2.8297 1.0311 40 1 3.7316 -3.2728 -0.5098 41 1 5.2765 -2.3887 -0.5109 42 1 1.6521 -2.1333 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:43 Heat of formation + Delta-G solvation = -43.303265 kcal Electronic energy + Delta-G solvation = -21997.232017 eV Core-core repulsion = 18940.880478 eV Total energy + Delta-G solvation = -3056.351539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54970 -39.62515 -37.15774 -34.98541 -34.59077 -34.21976 -31.38433 -28.90333 -28.28980 -27.70038 -27.57090 -27.26139 -23.78864 -21.77733 -21.77023 -20.04524 -18.60260 -18.06487 -17.45097 -17.25468 -16.47034 -15.54636 -15.47762 -15.20897 -15.09803 -14.57424 -14.27355 -14.20921 -13.97204 -13.94008 -13.91917 -13.59371 -13.49932 -13.26594 -13.11265 -12.95373 -12.74938 -12.66858 -12.59697 -12.33463 -12.20512 -12.14961 -12.11546 -11.90666 -11.22544 -10.76720 -10.51998 -9.55913 -9.47831 -9.38234 -8.15775 -6.32590 0.18647 0.39373 1.40270 1.42785 1.50211 1.68499 2.27184 2.45796 2.69247 3.11963 3.62230 3.79867 3.81378 3.92718 4.34302 4.36831 4.40280 4.48201 4.59639 4.62120 4.62488 4.66023 4.70055 4.72247 4.81768 4.87467 4.93342 4.94590 4.95417 5.02035 5.06720 5.29390 5.31390 5.40638 5.47418 5.57794 5.59813 5.64352 5.64674 5.99854 6.04701 6.13403 6.73287 6.74536 7.25525 7.42781 8.88658 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.005170 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.319015 B = 5414.810576 C = 5949.099888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.065 4.065 3 C -0.127 4.127 4 C -0.059 4.059 5 C -0.119 4.119 6 C -0.145 4.145 7 C 0.554 3.446 8 O -0.605 6.605 9 N -0.588 5.588 10 C 0.092 3.908 11 C 0.261 3.739 12 H 0.007 0.993 13 C -0.132 4.132 14 C -0.538 4.538 15 H 0.059 0.941 16 C 0.017 3.983 17 N -0.917 5.917 18 Si 0.965 3.035 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.262 1.262 22 C -0.059 4.059 23 C -0.118 4.118 24 C -0.126 4.126 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.020 0.980 38 H 0.265 0.735 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.042 0.958 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.138 -2.096 -2.048 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.060 4.060 5 C -0.176 4.176 6 C -0.148 4.148 7 C 0.343 3.657 8 O -0.488 6.488 9 N -0.317 5.317 10 C -0.051 4.051 11 C 0.160 3.840 12 H 0.025 0.975 13 C -0.190 4.190 14 C -0.577 4.577 15 H 0.077 0.923 16 C -0.183 4.183 17 N -0.556 5.556 18 Si 0.790 3.210 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.187 1.187 22 C -0.060 4.060 23 C -0.175 4.175 24 C -0.144 4.144 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.169 0.831 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.061 0.939 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.595 -2.138 -1.540 20.763 hybrid contribution 1.397 0.754 -0.085 1.590 sum -19.198 -1.384 -1.625 19.316 Atomic orbital electron populations 1.20868 0.88105 1.04062 1.03632 1.20409 0.97998 0.92145 0.95990 1.21072 0.91602 0.99503 1.02284 1.20001 0.94872 0.93332 0.97797 1.20850 0.99532 0.94796 1.02411 1.19704 0.91162 0.95487 1.08440 1.18868 0.88165 0.75269 0.83396 1.90691 1.71139 1.53761 1.33168 1.48199 1.07955 1.69507 1.06001 1.21663 0.96268 1.01790 0.85365 1.18586 0.74885 0.94838 0.95713 0.97455 1.21879 1.03064 0.95307 0.98783 1.21491 0.92210 1.06920 1.37061 0.92308 1.25728 0.96781 0.99641 0.96145 1.70009 1.02551 1.37008 1.45991 0.85510 0.77064 0.79145 0.79310 1.20277 1.20761 1.18671 1.20023 0.94848 0.93335 0.97805 1.20870 0.99535 0.94453 1.02642 1.21097 0.91677 0.99433 1.02149 0.89575 0.90160 0.90366 0.83083 0.91505 0.94189 0.88145 0.92988 0.90588 0.90350 0.93283 0.91117 0.96130 0.92570 0.91292 0.87792 0.93941 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.24 0.71 -0.53 16 2 C -0.07 -1.28 5.89 -19.81 -0.12 -1.40 16 3 C -0.13 -2.90 9.34 22.23 0.21 -2.69 16 4 C -0.06 -1.84 5.91 -19.61 -0.12 -1.96 16 5 C -0.12 -3.76 9.62 71.23 0.69 -3.07 16 6 C -0.14 -5.22 3.92 -20.09 -0.08 -5.30 16 7 C 0.55 25.62 4.04 86.79 0.35 25.97 16 8 O -0.60 -34.05 16.43 -3.88 -0.06 -34.11 16 9 N -0.59 -26.86 2.75 -830.20 -2.29 -29.14 16 10 C 0.09 3.30 9.50 127.77 1.21 4.51 16 11 C 0.26 14.20 2.64 44.25 0.12 14.32 16 12 H 0.01 0.49 6.90 -2.39 -0.02 0.47 16 13 C -0.13 -6.56 8.95 71.98 0.64 -5.91 16 14 C -0.54 -30.08 8.37 25.60 0.21 -29.86 16 15 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 16 C 0.02 0.93 5.30 84.66 0.45 1.38 16 17 N -0.92 -53.67 11.32 21.45 0.24 -53.43 16 18 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 C -0.06 -1.75 5.48 -19.61 -0.11 -1.86 16 23 C -0.12 -3.31 9.62 71.24 0.69 -2.62 16 24 C -0.13 -2.74 9.34 22.23 0.21 -2.53 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 27 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 28 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.54 7.08 -2.39 -0.02 1.52 16 31 H 0.10 2.38 8.09 -2.39 -0.02 2.36 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 2.66 6.42 -2.39 -0.02 2.64 16 34 H 0.08 2.41 6.54 -2.39 -0.02 2.39 16 35 H 0.05 2.20 6.66 -2.39 -0.02 2.19 16 36 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.10 2.07 8.09 -2.39 -0.02 2.05 16 41 H 0.04 1.42 7.08 -2.39 -0.02 1.40 16 42 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -72.80 341.15 5.98 -66.82 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.00 Total: 15.72 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 5.07 Total: -11.55 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.04 Total: -82.57 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.06 Total: -34.11 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -72.80 5.98 -66.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.512 kcal (2) G-P(sol) polarization free energy of solvation -72.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds