Wall clock time and date at job start Mon Mar 30 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38361 * 119.85721 * 2 1 4 4 C 1.37958 * 120.14711 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.07131 * 180.02562 * 4 3 2 6 6 C 1.39577 * 119.85173 * 0.02562 * 4 3 2 7 7 C 1.47842 * 120.14292 * 179.97438 * 6 4 3 8 8 O 1.21559 * 119.99987 * 90.00220 * 7 6 4 9 9 N 1.34775 * 120.00235 * 270.00242 * 7 6 4 10 10 C 1.46502 * 119.99903 * 0.02562 * 9 7 6 11 11 C 1.46506 * 120.00185 * 179.97438 * 9 7 6 12 12 H 1.09005 * 109.46943 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.47074 * 240.00282 * 11 9 7 14 14 C 1.50696 * 109.46871 * 119.99743 * 11 9 7 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 11 9 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.39573 * 119.71359 * 0.25624 * 6 4 3 23 23 C 1.50705 * 120.07693 * 179.72285 * 22 6 4 24 24 C 1.37963 * 119.85153 * 359.46770 * 22 6 4 25 25 H 1.09004 * 109.47212 * 89.99806 * 1 2 3 26 26 H 1.09005 * 109.47497 * 209.99813 * 1 2 3 27 27 H 1.09000 * 109.47399 * 330.00324 * 1 2 3 28 28 H 1.07994 * 119.92250 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47047 * 269.97284 * 5 4 3 30 30 H 1.09001 * 109.47258 * 29.98042 * 5 4 3 31 31 H 1.08999 * 109.46882 * 149.97920 * 5 4 3 32 32 H 1.09005 * 109.46997 * 269.99424 * 10 9 7 33 33 H 1.08997 * 109.47497 * 29.99773 * 10 9 7 34 34 H 1.09004 * 109.47127 * 150.00271 * 10 9 7 35 35 H 1.08996 * 109.47024 * 59.99854 * 13 11 9 36 36 H 1.08998 * 109.46637 * 179.97438 * 13 11 9 37 37 H 1.08997 * 109.46749 * 299.99711 * 13 11 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.46819 * 90.00091 * 23 22 6 40 40 H 1.09001 * 109.47272 * 210.00004 * 23 22 6 41 41 H 1.08996 * 109.46710 * 330.00162 * 23 22 6 42 42 H 1.08001 * 119.92750 * 180.27697 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.3238 2.5149 0.0011 6 6 4.2762 -0.0001 0.0005 7 6 5.7546 -0.0001 0.0005 8 8 6.3624 -0.0002 1.0533 9 7 6.4285 -0.0001 -1.1666 10 6 5.6960 0.0005 -2.4354 11 6 7.8936 0.0004 -1.1666 12 1 8.2569 0.0003 -0.1389 13 6 8.4031 1.2498 -1.8880 14 6 8.3963 -1.2300 -1.8767 15 1 7.6948 -1.9410 -2.2874 16 6 9.7520 -1.4480 -2.0022 17 7 10.1908 -2.5215 -2.6224 18 14 10.9654 -0.2185 -1.2913 19 1 11.2875 0.8078 -2.3151 20 1 10.3648 0.4392 -0.1030 21 1 12.2085 -0.9251 -0.8905 22 6 3.5753 -1.2071 -0.0054 23 6 4.3238 -2.5151 -0.0118 24 6 2.1957 -1.2001 -0.0002 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6522 2.1331 -0.0004 29 1 4.5051 2.8302 -1.0264 30 1 3.7315 3.2723 0.5146 31 1 5.2763 2.3881 0.5156 32 1 5.5141 -1.0270 -2.7504 33 1 4.7438 0.5147 -2.3050 34 1 6.2854 0.5143 -3.1949 35 1 8.0394 2.1396 -1.3743 36 1 9.4931 1.2503 -1.8876 37 1 8.0398 1.2494 -2.9157 38 1 11.1445 -2.6747 -2.7109 39 1 4.5041 -2.8354 1.0144 40 1 3.7318 -3.2700 -0.5294 41 1 5.2767 -2.3858 -0.5249 42 1 1.6521 -2.1333 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:47 Heat of formation + Delta-G solvation = -37.442053 kcal Electronic energy + Delta-G solvation = -22053.631368 eV Core-core repulsion = 18997.533990 eV Total energy + Delta-G solvation = -3056.097378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.60663 -39.69541 -37.28974 -34.96299 -34.59914 -34.28317 -32.20885 -28.91056 -28.35672 -27.72502 -27.66164 -27.13547 -23.90835 -21.79172 -21.77973 -20.04717 -18.99498 -18.11241 -17.65405 -17.29448 -16.60730 -15.67852 -15.41421 -15.19920 -15.14221 -14.85435 -14.40788 -14.27598 -14.13947 -13.99315 -13.94975 -13.81159 -13.60513 -13.58396 -13.27540 -13.17332 -13.03169 -12.61964 -12.60508 -12.34125 -12.15109 -12.07642 -11.91479 -11.61754 -11.39284 -10.82815 -10.78512 -9.56358 -9.50719 -9.45675 -8.36964 -6.41664 0.17030 0.38778 1.23807 1.33800 1.42444 1.60639 2.20938 2.25776 2.66870 2.97970 3.56978 3.78152 3.80034 3.91707 4.30581 4.33909 4.39485 4.39945 4.46668 4.52376 4.55733 4.59988 4.62445 4.66380 4.69786 4.70422 4.81917 4.87866 4.93827 4.95233 5.01022 5.06991 5.26040 5.28471 5.32496 5.44373 5.47675 5.56231 5.63926 5.66334 6.03260 6.17147 6.58146 6.64292 7.15151 7.29361 8.79085 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.005262 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.136954 B = 5319.987318 C = 5750.121671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.064 4.064 3 C -0.126 4.126 4 C -0.057 4.057 5 C -0.119 4.119 6 C -0.147 4.147 7 C 0.559 3.441 8 O -0.599 6.599 9 N -0.583 5.583 10 C 0.092 3.908 11 C 0.230 3.770 12 H 0.029 0.971 13 C -0.154 4.154 14 C -0.525 4.525 15 H 0.044 0.956 16 C 0.025 3.975 17 N -0.937 5.937 18 Si 0.940 3.060 19 H -0.250 1.250 20 H -0.265 1.265 21 H -0.294 1.294 22 C -0.059 4.059 23 C -0.120 4.120 24 C -0.129 4.129 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.157 0.843 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.269 0.731 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.037 0.963 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.427 9.173 1.628 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.057 4.057 5 C -0.175 4.175 6 C -0.149 4.149 7 C 0.348 3.652 8 O -0.482 6.482 9 N -0.312 5.312 10 C -0.051 4.051 11 C 0.127 3.873 12 H 0.047 0.953 13 C -0.211 4.211 14 C -0.564 4.564 15 H 0.062 0.938 16 C -0.174 4.174 17 N -0.577 5.577 18 Si 0.767 3.233 19 H -0.176 1.176 20 H -0.189 1.189 21 H -0.222 1.222 22 C -0.059 4.059 23 C -0.177 4.177 24 C -0.146 4.146 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.174 0.826 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.056 0.944 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.939 9.078 2.061 22.005 hybrid contribution 1.546 -0.278 0.240 1.589 sum -18.392 8.800 2.300 20.519 Atomic orbital electron populations 1.20875 0.88169 1.04079 1.03618 1.20413 0.97980 0.92170 0.95865 1.21110 0.91783 0.99343 1.02080 1.20042 0.94789 0.93391 0.97507 1.20885 0.99239 0.94011 1.03377 1.19645 0.91048 0.95446 1.08809 1.18837 0.88220 0.74948 0.83208 1.90692 1.71020 1.53512 1.32932 1.47897 1.07048 1.69920 1.06316 1.21689 0.96558 1.01625 0.85187 1.19023 0.77520 0.94265 0.96499 0.95287 1.22311 0.99768 0.97208 1.01836 1.21302 0.92443 1.06345 1.36298 0.93784 1.25619 0.99918 0.97050 0.94771 1.69999 1.15249 1.28544 1.43897 0.86000 0.78097 0.79271 0.79974 1.17557 1.18946 1.22183 1.19977 0.94869 0.93291 0.97805 1.20847 0.99445 0.94994 1.02387 1.21064 0.91627 0.99533 1.02410 0.89615 0.90479 0.90020 0.82566 0.89537 0.88354 0.94415 0.93863 0.89749 0.90038 0.92443 0.93746 0.90857 0.92204 0.91372 0.88474 0.94436 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.00 71.23 0.71 -0.51 16 2 C -0.06 -1.22 5.89 -19.81 -0.12 -1.34 16 3 C -0.13 -2.56 9.34 22.23 0.21 -2.35 16 4 C -0.06 -1.55 5.48 -19.61 -0.11 -1.66 16 5 C -0.12 -2.93 9.62 71.24 0.69 -2.25 16 6 C -0.15 -5.06 3.92 -20.09 -0.08 -5.14 16 7 C 0.56 24.45 4.05 86.79 0.35 24.80 16 8 O -0.60 -31.58 16.43 -3.90 -0.06 -31.64 16 9 N -0.58 -25.27 2.75 -830.18 -2.28 -27.55 16 10 C 0.09 3.21 9.50 127.77 1.21 4.42 16 11 C 0.23 11.48 2.23 44.24 0.10 11.58 16 12 H 0.03 1.65 5.95 -2.38 -0.01 1.63 16 13 C -0.15 -6.46 8.65 71.98 0.62 -5.84 16 14 C -0.53 -30.20 8.95 25.60 0.23 -29.97 16 15 H 0.04 2.77 7.89 -2.91 -0.02 2.74 16 16 C 0.03 1.48 5.45 84.66 0.46 1.94 16 17 N -0.94 -58.06 13.96 21.45 0.30 -57.76 16 18 Si 0.94 45.67 24.37 68.60 1.67 47.34 16 19 H -0.25 -11.06 6.87 99.48 0.68 -10.37 16 20 H -0.26 -12.83 6.53 99.48 0.65 -12.18 16 21 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 22 C -0.06 -1.81 5.91 -19.61 -0.12 -1.93 16 23 C -0.12 -3.90 9.62 71.24 0.69 -3.22 16 24 C -0.13 -2.93 9.34 22.23 0.21 -2.72 16 25 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.08 0.73 8.08 -2.38 -0.02 0.71 16 27 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 28 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 29 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.10 1.79 8.09 -2.39 -0.02 1.77 16 31 H 0.04 1.19 7.08 -2.39 -0.02 1.17 16 32 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.08 2.44 6.54 -2.39 -0.02 2.42 16 34 H 0.08 2.68 6.42 -2.38 -0.02 2.67 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.04 1.92 3.28 -2.39 -0.01 1.91 16 37 H 0.07 2.81 6.66 -2.39 -0.02 2.80 16 38 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.10 2.48 8.09 -2.39 -0.02 2.46 16 41 H 0.04 1.50 7.08 -2.39 -0.02 1.49 16 42 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -75.07 334.34 5.60 -69.47 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.92 Total: 14.31 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 5.06 Total: -14.17 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -1.98 Total: -85.31 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.06 Total: -31.64 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.67 Total: 47.34 kcal Total: -75.07 5.60 -69.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.025 kcal (2) G-P(sol) polarization free energy of solvation -75.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds