Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.00434 * 2 1 4 4 C 1.38211 * 120.00151 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99935 * 359.76802 * 4 3 2 6 6 C 1.38218 * 119.99895 * 0.46105 * 5 4 3 7 7 C 1.50704 * 120.00182 * 179.78850 * 6 5 4 8 8 C 1.52995 * 109.46974 * 269.72958 * 7 6 5 9 9 C 1.50704 * 109.46974 * 179.97438 * 8 7 6 10 10 O 1.21276 * 119.99791 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00250 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99674 * 0.02562 * 11 9 8 13 13 C 1.46503 * 120.00310 * 179.97438 * 11 9 8 14 14 H 1.08999 * 109.46849 * 0.02562 * 13 11 9 15 15 C 1.52997 * 109.46749 * 119.99959 * 13 11 9 16 16 C 1.50692 * 109.47272 * 240.00000 * 13 11 9 17 17 H 1.08003 * 120.00316 * 354.37084 * 16 13 11 18 18 C 1.37875 * 120.00133 * 174.37226 * 16 13 11 19 19 N 1.31516 * 120.00510 * 156.90156 * 18 16 13 20 20 Si 1.86810 * 119.99756 * 337.17312 * 18 16 13 21 21 H 1.48501 * 109.47061 * 179.72434 * 20 18 16 22 22 H 1.48495 * 109.46894 * 299.72787 * 20 18 16 23 23 H 1.48496 * 109.46696 * 59.72479 * 20 18 16 24 24 C 1.38214 * 119.99625 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47069 * 270.02759 * 1 2 3 26 26 H 1.09005 * 109.47077 * 30.01818 * 1 2 3 27 27 H 1.08998 * 109.47592 * 150.02429 * 1 2 3 28 28 H 1.07993 * 119.99600 * 359.97320 * 3 2 1 29 29 H 1.07994 * 120.00253 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.00106 * 180.25280 * 5 4 3 31 31 H 1.08998 * 109.47200 * 149.72765 * 7 6 5 32 32 H 1.09003 * 109.46884 * 29.72618 * 7 6 5 33 33 H 1.08998 * 109.47315 * 59.99878 * 8 7 6 34 34 H 1.09003 * 109.47038 * 299.99566 * 8 7 6 35 35 H 1.09007 * 109.46817 * 269.99788 * 12 11 9 36 36 H 1.08992 * 109.47593 * 29.99650 * 12 11 9 37 37 H 1.08998 * 109.47142 * 150.00162 * 12 11 9 38 38 H 1.09002 * 109.47176 * 173.30506 * 15 13 11 39 39 H 1.09005 * 109.47375 * 293.30343 * 15 13 11 40 40 H 1.09000 * 109.47483 * 53.30246 * 15 13 11 41 41 H 0.96989 * 119.99527 * 355.20009 * 19 18 16 42 42 H 1.08002 * 120.00188 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0059 6 6 3.5805 -1.1971 0.0011 7 6 4.3339 -2.5023 0.0022 8 6 4.5890 -2.9451 -1.4399 9 6 5.3429 -4.2499 -1.4389 10 8 5.6467 -4.7738 -0.3882 11 7 5.6796 -4.8347 -2.6055 12 6 5.3130 -4.2015 -3.8748 13 6 6.4130 -6.1029 -2.6045 14 1 6.5951 -6.4164 -1.5766 15 6 5.5863 -7.1706 -3.3240 16 6 7.7291 -5.9227 -3.3160 17 1 7.9542 -4.9871 -3.8064 18 6 8.6460 -6.9521 -3.3409 19 7 9.5546 -7.0006 -4.2904 20 14 8.5928 -8.2821 -2.0302 21 1 9.6726 -9.2697 -2.2830 22 1 8.7877 -7.6670 -0.6927 23 1 7.2758 -8.9667 -2.0730 24 6 2.1980 -1.1970 0.0005 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3634 -0.8902 -0.5134 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 0.0001 30 1 5.3516 -0.0002 0.0105 31 1 3.7448 -3.2615 0.5166 32 1 5.2864 -2.3716 0.5160 33 1 5.1781 -2.1859 -1.9543 34 1 3.6365 -3.0758 -1.9537 35 1 4.3320 -4.5583 -4.1889 36 1 5.2818 -3.1197 -3.7456 37 1 6.0523 -4.4555 -4.6344 38 1 6.1787 -8.0796 -3.4283 39 1 4.6885 -7.3864 -2.7448 40 1 5.3028 -6.8064 -4.3115 41 1 9.5371 -6.3526 -5.0119 42 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = -30.195137 kcal Electronic energy + Delta-G solvation = -20808.387001 eV Core-core repulsion = 17752.603873 eV Total energy + Delta-G solvation = -3055.783128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.75280 -39.03298 -35.59311 -34.28636 -32.85692 -32.38667 -30.60780 -29.27208 -27.06653 -26.21295 -24.97286 -24.46899 -22.15323 -21.00845 -20.13175 -18.23805 -17.51638 -16.74357 -16.25560 -15.82840 -15.32214 -15.01277 -14.72571 -14.01655 -13.76810 -13.47636 -13.27817 -13.11715 -12.96194 -12.59589 -12.49872 -12.38503 -12.21184 -11.92817 -11.80136 -11.49355 -11.41919 -11.33500 -11.18564 -10.96117 -10.76474 -10.48352 -10.07492 -9.77329 -9.16767 -9.08930 -8.86334 -8.64278 -8.29757 -7.75284 -6.50681 -4.12944 1.24424 1.28384 3.30158 3.41034 3.49961 3.59754 3.64884 3.90456 4.48337 4.64079 4.67726 4.79129 5.01415 5.10915 5.16039 5.20561 5.23341 5.30808 5.36444 5.43544 5.55927 5.59842 5.60858 5.80208 5.87321 5.94549 5.96723 6.08719 6.27409 6.28923 6.36638 6.37858 6.44912 6.45613 6.61204 6.62524 6.92485 6.96375 7.18073 7.47362 7.87498 8.30367 8.37059 8.77645 8.97417 9.52281 10.84364 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033435 B = 0.003445 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.245546 B = 8124.911334 C = 8180.376697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.130 4.130 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.071 4.071 7 C -0.066 4.066 8 C -0.131 4.131 9 C 0.503 3.497 10 O -0.556 6.556 11 N -0.589 5.589 12 C 0.084 3.916 13 C 0.235 3.765 14 H 0.054 0.946 15 C -0.155 4.155 16 C -0.618 4.618 17 H 0.061 0.939 18 C 0.043 3.957 19 N -0.895 5.895 20 Si 1.032 2.968 21 H -0.284 1.284 22 H -0.279 1.279 23 H -0.276 1.276 24 C -0.118 4.118 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.045 0.955 41 H 0.269 0.731 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.506 14.243 5.366 22.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.133 4.133 5 C -0.140 4.140 6 C -0.071 4.071 7 C -0.104 4.104 8 C -0.171 4.171 9 C 0.290 3.710 10 O -0.436 6.436 11 N -0.319 5.319 12 C -0.059 4.059 13 C 0.133 3.867 14 H 0.072 0.928 15 C -0.213 4.213 16 C -0.655 4.655 17 H 0.080 0.920 18 C -0.164 4.164 19 N -0.527 5.527 20 Si 0.859 3.141 21 H -0.209 1.209 22 H -0.205 1.205 23 H -0.202 1.202 24 C -0.136 4.136 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.539 12.586 6.414 21.000 hybrid contribution -0.722 1.544 -0.819 1.891 sum -16.261 14.130 5.595 22.257 Atomic orbital electron populations 1.20787 0.91359 1.02689 1.02224 1.19905 0.95951 0.93203 0.99705 1.20981 0.94292 0.97330 1.02194 1.21117 0.94275 0.97944 0.99986 1.21112 1.00058 0.91971 1.00900 1.20003 0.93685 0.95240 0.98136 1.20363 1.00781 0.93139 0.96125 1.21640 1.01140 0.96141 0.98153 1.20485 0.80057 0.86429 0.84044 1.90633 1.56171 1.65694 1.31084 1.47983 1.54897 1.24233 1.04830 1.21612 1.00138 0.96499 0.87697 1.19150 0.90502 0.79251 0.97815 0.92833 1.22421 0.98664 1.00367 0.99869 1.22109 1.01795 1.02563 1.39074 0.92042 1.25632 0.92808 0.99126 0.98817 1.70869 1.36944 1.35273 1.09623 0.84215 0.76586 0.76553 0.76732 1.20934 1.20490 1.20185 1.20974 0.93634 0.97581 1.01414 0.91287 0.91688 0.91526 0.86433 0.86202 0.85986 0.90253 0.90104 0.89321 0.89507 0.93835 0.92538 0.90078 0.92012 0.95625 0.93558 0.92102 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.00 0.36 -0.48 16 2 C -0.09 -0.87 5.88 -104.62 -0.62 -1.49 16 3 C -0.13 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 6 C -0.07 -0.85 5.13 -104.62 -0.54 -1.39 16 7 C -0.07 -0.91 4.63 -27.88 -0.13 -1.04 16 8 C -0.13 -1.89 4.23 -27.88 -0.12 -2.01 16 9 C 0.50 10.08 7.67 -10.99 -0.08 10.00 16 10 O -0.56 -13.19 15.31 5.56 0.09 -13.10 16 11 N -0.59 -12.37 2.75 -175.26 -0.48 -12.85 16 12 C 0.08 1.42 9.10 59.85 0.54 1.96 16 13 C 0.23 5.77 2.23 -69.09 -0.15 5.61 16 14 H 0.05 1.44 5.48 -51.93 -0.28 1.16 16 15 C -0.15 -3.42 9.01 37.16 0.33 -3.09 16 16 C -0.62 -17.14 8.30 -34.45 -0.29 -17.42 16 17 H 0.06 1.81 7.37 -52.48 -0.39 1.42 16 18 C 0.04 1.23 5.20 -17.82 -0.09 1.14 16 19 N -0.89 -26.91 13.70 55.43 0.76 -26.15 16 20 Si 1.03 25.56 26.44 -169.99 -4.49 21.06 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.34 6.12 56.52 0.35 -5.99 16 24 C -0.12 -1.31 9.36 -39.58 -0.37 -1.68 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 32 H 0.08 1.18 8.04 -51.93 -0.42 0.77 16 33 H 0.09 1.19 7.40 -51.93 -0.38 0.81 16 34 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 37 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 38 H 0.06 1.42 5.44 -51.93 -0.28 1.13 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.95 7.46 -51.93 -0.39 0.57 16 41 H 0.27 8.00 8.73 -40.82 -0.36 7.64 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -32.34 341.01 -7.99 -40.33 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.68 Total: 0.41 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.31 Total: -14.83 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.28 Total: -39.00 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -4.49 Total: 21.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.34 -7.99 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.136 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds