Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.00434 * 2 1 4 4 C 1.38211 * 120.00151 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99935 * 359.76802 * 4 3 2 6 6 C 1.38218 * 119.99895 * 0.46105 * 5 4 3 7 7 C 1.50704 * 120.00182 * 179.78850 * 6 5 4 8 8 C 1.52995 * 109.46974 * 269.72958 * 7 6 5 9 9 C 1.50704 * 109.46974 * 179.97438 * 8 7 6 10 10 O 1.21276 * 119.99791 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00250 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99674 * 0.02562 * 11 9 8 13 13 C 1.46503 * 120.00310 * 179.97438 * 11 9 8 14 14 H 1.08999 * 109.46849 * 0.02562 * 13 11 9 15 15 C 1.52997 * 109.46749 * 119.99959 * 13 11 9 16 16 C 1.50692 * 109.47272 * 240.00000 * 13 11 9 17 17 H 1.08003 * 120.00316 * 354.37084 * 16 13 11 18 18 C 1.37875 * 120.00133 * 174.37226 * 16 13 11 19 19 N 1.31516 * 120.00510 * 156.90156 * 18 16 13 20 20 Si 1.86810 * 119.99756 * 337.17312 * 18 16 13 21 21 H 1.48501 * 109.47061 * 179.72434 * 20 18 16 22 22 H 1.48495 * 109.46894 * 299.72787 * 20 18 16 23 23 H 1.48496 * 109.46696 * 59.72479 * 20 18 16 24 24 C 1.38214 * 119.99625 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47069 * 270.02759 * 1 2 3 26 26 H 1.09005 * 109.47077 * 30.01818 * 1 2 3 27 27 H 1.08998 * 109.47592 * 150.02429 * 1 2 3 28 28 H 1.07993 * 119.99600 * 359.97320 * 3 2 1 29 29 H 1.07994 * 120.00253 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.00106 * 180.25280 * 5 4 3 31 31 H 1.08998 * 109.47200 * 149.72765 * 7 6 5 32 32 H 1.09003 * 109.46884 * 29.72618 * 7 6 5 33 33 H 1.08998 * 109.47315 * 59.99878 * 8 7 6 34 34 H 1.09003 * 109.47038 * 299.99566 * 8 7 6 35 35 H 1.09007 * 109.46817 * 269.99788 * 12 11 9 36 36 H 1.08992 * 109.47593 * 29.99650 * 12 11 9 37 37 H 1.08998 * 109.47142 * 150.00162 * 12 11 9 38 38 H 1.09002 * 109.47176 * 173.30506 * 15 13 11 39 39 H 1.09005 * 109.47375 * 293.30343 * 15 13 11 40 40 H 1.09000 * 109.47483 * 53.30246 * 15 13 11 41 41 H 0.96989 * 119.99527 * 355.20009 * 19 18 16 42 42 H 1.08002 * 120.00188 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0059 6 6 3.5805 -1.1971 0.0011 7 6 4.3339 -2.5023 0.0022 8 6 4.5890 -2.9451 -1.4399 9 6 5.3429 -4.2499 -1.4389 10 8 5.6467 -4.7738 -0.3882 11 7 5.6796 -4.8347 -2.6055 12 6 5.3130 -4.2015 -3.8748 13 6 6.4130 -6.1029 -2.6045 14 1 6.5951 -6.4164 -1.5766 15 6 5.5863 -7.1706 -3.3240 16 6 7.7291 -5.9227 -3.3160 17 1 7.9542 -4.9871 -3.8064 18 6 8.6460 -6.9521 -3.3409 19 7 9.5546 -7.0006 -4.2904 20 14 8.5928 -8.2821 -2.0302 21 1 9.6726 -9.2697 -2.2830 22 1 8.7877 -7.6670 -0.6927 23 1 7.2758 -8.9667 -2.0730 24 6 2.1980 -1.1970 0.0005 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3634 -0.8902 -0.5134 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 0.0001 30 1 5.3516 -0.0002 0.0105 31 1 3.7448 -3.2615 0.5166 32 1 5.2864 -2.3716 0.5160 33 1 5.1781 -2.1859 -1.9543 34 1 3.6365 -3.0758 -1.9537 35 1 4.3320 -4.5583 -4.1889 36 1 5.2818 -3.1197 -3.7456 37 1 6.0523 -4.4555 -4.6344 38 1 6.1787 -8.0796 -3.4283 39 1 4.6885 -7.3864 -2.7448 40 1 5.3028 -6.8064 -4.3115 41 1 9.5371 -6.3526 -5.0119 42 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = -48.456417 kcal Electronic energy + Delta-G solvation = -20809.178870 eV Core-core repulsion = 17752.603873 eV Total energy + Delta-G solvation = -3056.574997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99536 -40.19138 -37.32250 -35.35895 -34.82214 -33.22038 -32.25635 -30.44859 -27.75312 -27.66536 -26.85564 -25.81164 -23.02527 -22.50093 -21.17038 -19.93963 -19.53925 -18.08980 -17.24995 -16.97458 -16.94697 -16.18703 -15.66892 -15.55320 -15.05834 -14.82311 -14.53825 -14.37672 -14.01469 -13.98273 -13.75844 -13.60964 -13.43295 -13.31853 -13.19513 -12.97757 -12.96275 -12.44889 -12.43098 -12.17163 -11.95935 -11.82292 -11.72799 -11.70788 -11.24818 -10.70282 -10.47366 -9.67467 -9.51234 -9.45964 -8.73690 -6.39319 0.44456 0.50472 1.41855 1.48868 1.68732 1.74618 2.31095 2.41700 2.86302 2.95716 3.57832 3.88400 4.00631 4.06318 4.18929 4.19976 4.30082 4.36342 4.50114 4.53419 4.59081 4.61638 4.65973 4.70746 4.75964 4.80408 4.86278 4.91636 4.95576 5.03739 5.11371 5.12666 5.25349 5.34575 5.37278 5.60089 5.70443 5.71629 5.76283 5.82061 6.02967 6.16148 6.54851 6.72733 7.26004 7.39338 8.57129 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033435 B = 0.003445 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.245546 B = 8124.911334 C = 8180.376697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.132 4.132 4 C -0.119 4.119 5 C -0.138 4.138 6 C -0.082 4.082 7 C -0.059 4.059 8 C -0.115 4.115 9 C 0.494 3.506 10 O -0.600 6.600 11 N -0.600 5.600 12 C 0.082 3.918 13 C 0.233 3.767 14 H 0.029 0.971 15 C -0.146 4.146 16 C -0.615 4.615 17 H 0.034 0.966 18 C -0.001 4.001 19 N -0.923 5.923 20 Si 1.066 2.934 21 H -0.280 1.280 22 H -0.283 1.283 23 H -0.246 1.246 24 C -0.129 4.129 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.259 0.741 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.185 15.500 5.513 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.137 4.137 5 C -0.156 4.156 6 C -0.083 4.083 7 C -0.096 4.096 8 C -0.154 4.154 9 C 0.284 3.716 10 O -0.483 6.483 11 N -0.330 5.330 12 C -0.060 4.060 13 C 0.130 3.870 14 H 0.047 0.953 15 C -0.205 4.205 16 C -0.653 4.653 17 H 0.052 0.948 18 C -0.202 4.202 19 N -0.558 5.558 20 Si 0.888 3.112 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.170 1.170 24 C -0.147 4.147 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.250 13.870 6.532 23.835 hybrid contribution 0.091 1.292 -0.865 1.557 sum -18.159 15.162 5.668 24.326 Atomic orbital electron populations 1.20834 0.89508 1.03617 1.02997 1.20242 0.97415 0.92872 0.98753 1.21335 0.94310 0.98292 1.01072 1.21394 0.94795 0.98234 0.99266 1.21243 1.00338 0.92408 1.01582 1.19848 0.94103 0.94399 0.99906 1.20220 1.00026 0.94068 0.95332 1.21610 1.01626 0.92948 0.99261 1.21446 0.79588 0.87644 0.82945 1.90605 1.57923 1.67147 1.32590 1.48075 1.54618 1.23522 1.06778 1.21807 1.00687 0.98329 0.85181 1.18896 0.90092 0.81957 0.96077 0.95298 1.22256 0.98806 0.98900 1.00507 1.22266 1.03571 1.01177 1.38263 0.94796 1.26739 0.92488 1.01284 0.99682 1.70962 1.38419 1.35916 1.10486 0.83763 0.78208 0.74941 0.74257 1.20522 1.20882 1.17037 1.21128 0.93308 0.98554 1.01711 0.90506 0.90330 0.91093 0.84092 0.84232 0.85962 0.91149 0.91940 0.87820 0.86746 0.90842 0.89396 0.92491 0.93022 0.93481 0.92344 0.93209 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.23 0.71 -0.61 16 2 C -0.09 -1.61 5.88 -19.87 -0.12 -1.72 16 3 C -0.13 -2.16 9.70 22.27 0.22 -1.94 16 4 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 5 C -0.14 -2.93 9.70 22.27 0.22 -2.71 16 6 C -0.08 -1.88 5.13 -19.86 -0.10 -1.98 16 7 C -0.06 -1.57 4.63 29.85 0.14 -1.43 16 8 C -0.11 -3.12 4.23 29.85 0.13 -3.00 16 9 C 0.49 19.48 7.67 87.66 0.67 20.16 16 10 O -0.60 -28.80 15.31 -3.02 -0.05 -28.84 16 11 N -0.60 -24.65 2.75 -826.81 -2.28 -26.92 16 12 C 0.08 2.60 9.10 127.77 1.16 3.77 16 13 C 0.23 11.41 2.23 44.24 0.10 11.51 16 14 H 0.03 1.57 5.48 -2.39 -0.01 1.56 16 15 C -0.15 -6.24 9.01 71.98 0.65 -5.59 16 16 C -0.61 -34.72 8.30 25.60 0.21 -34.50 16 17 H 0.03 2.06 7.37 -2.91 -0.02 2.04 16 18 C 0.00 -0.03 5.20 84.65 0.44 0.41 16 19 N -0.92 -56.77 13.70 21.45 0.29 -56.48 16 20 Si 1.07 51.83 26.44 68.60 1.81 53.65 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 22 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.25 -10.72 6.12 99.48 0.61 -10.12 16 24 C -0.13 -2.62 9.36 22.27 0.21 -2.41 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 0.71 8.09 -2.38 -0.02 0.69 16 27 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 28 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 32 H 0.06 1.87 8.04 -2.39 -0.02 1.85 16 33 H 0.10 2.54 7.40 -2.39 -0.02 2.52 16 34 H 0.11 2.52 8.11 -2.39 -0.02 2.50 16 35 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.09 2.20 6.44 -2.39 -0.02 2.18 16 37 H 0.06 2.08 6.91 -2.39 -0.02 2.06 16 38 H 0.05 2.28 5.44 -2.39 -0.01 2.27 16 39 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.06 2.31 7.46 -2.39 -0.02 2.29 16 41 H 0.26 15.91 8.73 -92.72 -0.81 15.10 16 42 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -71.57 341.01 5.49 -66.08 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.85 Total: 14.46 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 4.86 Total: -21.95 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -1.98 Total: -83.40 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.05 Total: -28.84 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 1.81 Total: 53.65 kcal Total: -71.57 5.49 -66.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.622 kcal (2) G-P(sol) polarization free energy of solvation -71.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds