Wall clock time and date at job start Mon Mar 30 2020 01:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 119.99935 * 2 1 4 4 C 1.38211 * 120.00002 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99914 * 359.76691 * 4 3 2 6 6 C 1.38217 * 120.00053 * 0.46150 * 5 4 3 7 7 C 1.50697 * 120.00288 * 179.79274 * 6 5 4 8 8 C 1.52996 * 109.47036 * 269.72820 * 7 6 5 9 9 C 1.50697 * 109.47364 * 179.97438 * 8 7 6 10 10 O 1.21286 * 120.00046 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00215 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99903 * 0.02562 * 11 9 8 13 13 C 1.46506 * 120.00185 * 179.97438 * 11 9 8 14 14 H 1.09005 * 109.46943 * 0.02562 * 13 11 9 15 15 C 1.53000 * 109.47074 * 240.00282 * 13 11 9 16 16 C 1.50696 * 109.46871 * 119.99743 * 13 11 9 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 13 11 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38216 * 120.00069 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47488 * 270.02657 * 1 2 3 26 26 H 1.08999 * 109.47313 * 30.02890 * 1 2 3 27 27 H 1.09001 * 109.46869 * 150.02595 * 1 2 3 28 28 H 1.08000 * 119.99671 * 359.97156 * 3 2 1 29 29 H 1.08001 * 119.99989 * 179.97438 * 4 3 2 30 30 H 1.08003 * 120.00304 * 180.25631 * 5 4 3 31 31 H 1.08999 * 109.47326 * 149.72485 * 7 6 5 32 32 H 1.08999 * 109.46739 * 29.72641 * 7 6 5 33 33 H 1.08999 * 109.47336 * 59.99671 * 8 7 6 34 34 H 1.09000 * 109.46953 * 300.00012 * 8 7 6 35 35 H 1.09005 * 109.46997 * 269.99424 * 12 11 9 36 36 H 1.08997 * 109.47497 * 29.99773 * 12 11 9 37 37 H 1.09004 * 109.47127 * 150.00271 * 12 11 9 38 38 H 1.08996 * 109.47024 * 59.99854 * 15 13 11 39 39 H 1.08998 * 109.46637 * 179.97438 * 15 13 11 40 40 H 1.08997 * 109.46749 * 299.99711 * 15 13 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.00009 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0059 6 6 3.5807 -1.1970 0.0012 7 6 4.3341 -2.5021 0.0023 8 6 4.5893 -2.9449 -1.4397 9 6 5.3433 -4.2497 -1.4386 10 8 5.6463 -4.7741 -0.3878 11 7 5.6800 -4.8344 -2.6053 12 6 5.3134 -4.2013 -3.8746 13 6 6.4135 -6.1027 -2.6043 14 1 6.5956 -6.4162 -1.5763 15 6 7.7498 -5.9195 -3.3265 16 6 5.5994 -7.1543 -3.3128 17 1 4.6325 -6.9032 -3.7233 18 6 6.0889 -8.4374 -3.4371 19 7 5.3787 -9.3551 -4.0559 20 14 7.7609 -8.8719 -2.7265 21 1 8.8102 -8.6384 -3.7511 22 1 8.0304 -8.0216 -1.5392 23 1 7.7713 -10.3014 -2.3242 24 6 2.1981 -1.1970 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6582 2.1326 -0.0005 29 1 4.1204 2.1327 0.0001 30 1 5.3517 0.0000 0.0105 31 1 3.7450 -3.2613 0.5168 32 1 5.2864 -2.3713 0.5162 33 1 5.1784 -2.1857 -1.9542 34 1 3.6369 -3.0756 -1.9535 35 1 4.3325 -4.5583 -4.1887 36 1 5.2822 -3.1195 -3.7454 37 1 6.0528 -4.4554 -4.6342 38 1 8.3385 -5.1588 -2.8139 39 1 8.2957 -6.8629 -3.3253 40 1 7.5672 -5.6062 -4.3544 41 1 5.7233 -10.2576 -4.1437 42 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:08 Heat of formation + Delta-G solvation = -20.939635 kcal Electronic energy + Delta-G solvation = -20804.343936 eV Core-core repulsion = 17748.962157 eV Total energy + Delta-G solvation = -3055.381779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.74349 -39.03939 -35.63940 -34.27270 -32.79670 -32.35734 -30.72904 -29.35053 -27.04330 -26.23919 -25.17856 -24.64807 -22.15349 -21.17717 -20.18297 -18.24457 -17.03704 -16.58058 -16.09717 -15.81162 -15.56771 -14.99233 -14.76272 -14.30065 -13.92270 -13.47870 -13.14806 -13.13170 -12.92609 -12.79680 -12.42087 -12.36438 -12.23277 -12.11045 -11.89173 -11.65158 -11.41698 -11.28113 -11.10248 -10.96502 -10.74738 -10.67145 -10.13290 -9.64906 -9.34473 -9.06926 -8.84227 -8.63468 -8.62555 -7.70932 -6.14376 -4.14808 1.25788 1.30130 3.23294 3.30390 3.37028 3.39948 3.61419 3.87903 4.35488 4.66345 4.69775 4.79928 5.02806 5.13192 5.18446 5.21926 5.24913 5.31633 5.40112 5.44573 5.57939 5.60491 5.64787 5.82104 5.89304 5.97437 6.01377 6.10489 6.21270 6.26721 6.29273 6.33543 6.37976 6.48057 6.49756 6.62982 6.84671 6.94106 7.13183 7.36447 7.63976 8.20346 8.48983 8.85617 8.93689 9.46904 10.98463 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033017 B = 0.003472 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.853008 B = 8061.574612 C = 8325.437838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.130 4.130 4 C -0.116 4.116 5 C -0.123 4.123 6 C -0.071 4.071 7 C -0.067 4.067 8 C -0.131 4.131 9 C 0.504 3.496 10 O -0.555 6.555 11 N -0.589 5.589 12 C 0.087 3.913 13 C 0.228 3.772 14 H 0.062 0.938 15 C -0.161 4.161 16 C -0.527 4.527 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.896 5.896 20 Si 0.884 3.116 21 H -0.277 1.277 22 H -0.263 1.263 23 H -0.294 1.294 24 C -0.117 4.117 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.266 0.734 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 20.724 4.817 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.134 4.134 5 C -0.141 4.141 6 C -0.071 4.071 7 C -0.104 4.104 8 C -0.171 4.171 9 C 0.292 3.708 10 O -0.435 6.435 11 N -0.320 5.320 12 C -0.057 4.057 13 C 0.126 3.874 14 H 0.080 0.920 15 C -0.219 4.219 16 C -0.565 4.565 17 H 0.096 0.904 18 C -0.128 4.128 19 N -0.533 5.533 20 Si 0.714 3.286 21 H -0.204 1.204 22 H -0.188 1.188 23 H -0.221 1.221 24 C -0.135 4.135 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.758 20.232 5.283 21.445 hybrid contribution 0.860 -0.361 0.015 0.933 sum -3.898 19.872 5.298 20.932 Atomic orbital electron populations 1.20795 0.91325 1.02764 1.02251 1.19918 0.95999 0.93185 0.99547 1.20980 0.94290 0.97334 1.02207 1.21101 0.94281 0.97892 1.00145 1.21078 0.99915 0.91975 1.01182 1.19997 0.93715 0.95202 0.98146 1.20363 1.00699 0.93224 0.96144 1.21640 1.01420 0.95841 0.98165 1.20472 0.80027 0.86375 0.83941 1.90641 1.56008 1.65732 1.31096 1.47887 1.55376 1.23692 1.05014 1.21599 1.01368 0.95758 0.86980 1.19280 0.88485 0.81069 0.98547 0.91988 1.22458 0.98705 0.99739 1.01027 1.21172 1.05226 0.93232 1.36883 0.90404 1.24877 0.97406 0.96060 0.94461 1.69879 1.37954 1.03266 1.42238 0.86908 0.84420 0.77139 0.80175 1.20420 1.18799 1.22141 1.21011 0.93679 0.97684 1.01125 0.91272 0.91692 0.91417 0.86449 0.86267 0.86099 0.90108 0.90259 0.89413 0.89202 0.92820 0.92633 0.90880 0.94831 0.93170 0.92546 0.92455 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.09 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.13 -1.24 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 5 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 6 C -0.07 -0.84 5.13 -104.63 -0.54 -1.38 16 7 C -0.07 -0.90 4.63 -27.89 -0.13 -1.03 16 8 C -0.13 -1.85 4.23 -27.89 -0.12 -1.97 16 9 C 0.50 9.93 7.67 -10.99 -0.08 9.84 16 10 O -0.56 -13.03 15.31 5.55 0.09 -12.94 16 11 N -0.59 -12.10 2.75 -175.25 -0.48 -12.59 16 12 C 0.09 1.41 9.48 59.85 0.57 1.98 16 13 C 0.23 5.55 2.23 -69.08 -0.15 5.40 16 14 H 0.06 1.68 5.95 -51.93 -0.31 1.37 16 15 C -0.16 -3.49 8.65 37.16 0.32 -3.17 16 16 C -0.53 -14.70 8.95 -34.44 -0.31 -15.00 16 17 H 0.08 2.33 7.89 -52.49 -0.41 1.92 16 18 C 0.07 2.14 5.45 -17.82 -0.10 2.05 16 19 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 20 Si 0.88 22.01 24.37 -169.99 -4.14 17.87 16 21 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 22 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 C -0.12 -1.33 9.36 -39.58 -0.37 -1.70 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.42 8.09 -51.93 -0.42 0.01 16 27 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 32 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 33 H 0.09 1.06 7.40 -51.93 -0.38 0.68 16 34 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 37 H 0.07 1.18 6.42 -51.93 -0.33 0.85 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 1.13 3.28 -51.93 -0.17 0.96 16 40 H 0.06 1.13 6.66 -51.93 -0.35 0.78 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -32.79 337.42 -7.54 -40.33 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.53 Total: 0.45 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.33 Total: -11.86 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.29 Total: -38.94 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.79 -7.54 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.394 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds