Wall clock time and date at job start Mon Mar 30 2020 01:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 119.99935 * 2 1 4 4 C 1.38211 * 120.00002 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99914 * 359.76691 * 4 3 2 6 6 C 1.38217 * 120.00053 * 0.46150 * 5 4 3 7 7 C 1.50697 * 120.00288 * 179.79274 * 6 5 4 8 8 C 1.52996 * 109.47036 * 269.72820 * 7 6 5 9 9 C 1.50697 * 109.47364 * 179.97438 * 8 7 6 10 10 O 1.21286 * 120.00046 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00215 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99903 * 0.02562 * 11 9 8 13 13 C 1.46506 * 120.00185 * 179.97438 * 11 9 8 14 14 H 1.09005 * 109.46943 * 0.02562 * 13 11 9 15 15 C 1.53000 * 109.47074 * 240.00282 * 13 11 9 16 16 C 1.50696 * 109.46871 * 119.99743 * 13 11 9 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 13 11 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38216 * 120.00069 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47488 * 270.02657 * 1 2 3 26 26 H 1.08999 * 109.47313 * 30.02890 * 1 2 3 27 27 H 1.09001 * 109.46869 * 150.02595 * 1 2 3 28 28 H 1.08000 * 119.99671 * 359.97156 * 3 2 1 29 29 H 1.08001 * 119.99989 * 179.97438 * 4 3 2 30 30 H 1.08003 * 120.00304 * 180.25631 * 5 4 3 31 31 H 1.08999 * 109.47326 * 149.72485 * 7 6 5 32 32 H 1.08999 * 109.46739 * 29.72641 * 7 6 5 33 33 H 1.08999 * 109.47336 * 59.99671 * 8 7 6 34 34 H 1.09000 * 109.46953 * 300.00012 * 8 7 6 35 35 H 1.09005 * 109.46997 * 269.99424 * 12 11 9 36 36 H 1.08997 * 109.47497 * 29.99773 * 12 11 9 37 37 H 1.09004 * 109.47127 * 150.00271 * 12 11 9 38 38 H 1.08996 * 109.47024 * 59.99854 * 15 13 11 39 39 H 1.08998 * 109.46637 * 179.97438 * 15 13 11 40 40 H 1.08997 * 109.46749 * 299.99711 * 15 13 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.00009 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0059 6 6 3.5807 -1.1970 0.0012 7 6 4.3341 -2.5021 0.0023 8 6 4.5893 -2.9449 -1.4397 9 6 5.3433 -4.2497 -1.4386 10 8 5.6463 -4.7741 -0.3878 11 7 5.6800 -4.8344 -2.6053 12 6 5.3134 -4.2013 -3.8746 13 6 6.4135 -6.1027 -2.6043 14 1 6.5956 -6.4162 -1.5763 15 6 7.7498 -5.9195 -3.3265 16 6 5.5994 -7.1543 -3.3128 17 1 4.6325 -6.9032 -3.7233 18 6 6.0889 -8.4374 -3.4371 19 7 5.3787 -9.3551 -4.0559 20 14 7.7609 -8.8719 -2.7265 21 1 8.8102 -8.6384 -3.7511 22 1 8.0304 -8.0216 -1.5392 23 1 7.7713 -10.3014 -2.3242 24 6 2.1981 -1.1970 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6582 2.1326 -0.0005 29 1 4.1204 2.1327 0.0001 30 1 5.3517 0.0000 0.0105 31 1 3.7450 -3.2613 0.5168 32 1 5.2864 -2.3713 0.5162 33 1 5.1784 -2.1857 -1.9542 34 1 3.6369 -3.0756 -1.9535 35 1 4.3325 -4.5583 -4.1887 36 1 5.2822 -3.1195 -3.7454 37 1 6.0528 -4.4554 -4.6342 38 1 8.3385 -5.1588 -2.8139 39 1 8.2957 -6.8629 -3.3253 40 1 7.5672 -5.6062 -4.3544 41 1 5.7233 -10.2576 -4.1437 42 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:07 Heat of formation + Delta-G solvation = -40.255797 kcal Electronic energy + Delta-G solvation = -20805.181548 eV Core-core repulsion = 17748.962157 eV Total energy + Delta-G solvation = -3056.219391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98579 -40.17575 -37.34609 -35.33846 -34.73349 -33.20996 -32.41370 -30.47616 -27.74594 -27.67464 -27.15293 -25.87956 -23.09328 -22.60876 -21.16572 -19.83787 -18.94790 -17.94096 -17.38477 -17.16299 -16.90267 -16.32783 -15.97351 -15.51750 -15.02315 -14.79416 -14.47855 -14.46616 -14.14540 -13.95870 -13.84936 -13.62342 -13.47104 -13.39204 -13.07699 -13.03987 -12.93435 -12.57622 -12.40228 -12.14486 -12.06082 -11.80085 -11.70532 -11.59286 -11.35735 -10.81324 -10.66001 -9.65517 -9.43852 -9.39451 -8.36678 -6.41231 0.46815 0.52531 1.24640 1.34407 1.43273 1.76246 2.26381 2.30567 2.88470 2.98619 3.60168 3.89888 4.03285 4.08408 4.21206 4.22236 4.32351 4.40792 4.45149 4.53193 4.56626 4.61046 4.63281 4.67221 4.76542 4.81572 4.85214 4.94442 4.97033 5.05612 5.09155 5.13238 5.26947 5.32476 5.35815 5.48753 5.62263 5.72363 5.73441 5.78639 6.18168 6.19431 6.60779 6.75168 7.20530 7.38564 8.79535 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033017 B = 0.003472 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.853008 B = 8061.574612 C = 8325.437838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.132 4.132 4 C -0.117 4.117 5 C -0.132 4.132 6 C -0.082 4.082 7 C -0.059 4.059 8 C -0.115 4.115 9 C 0.496 3.504 10 O -0.601 6.601 11 N -0.598 5.598 12 C 0.083 3.917 13 C 0.229 3.771 14 H 0.030 0.970 15 C -0.154 4.154 16 C -0.527 4.527 17 H 0.043 0.957 18 C 0.022 3.978 19 N -0.940 5.940 20 Si 0.943 3.057 21 H -0.252 1.252 22 H -0.263 1.263 23 H -0.295 1.295 24 C -0.134 4.134 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.131 0.869 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.268 0.732 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.226 23.687 4.525 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.135 4.135 5 C -0.150 4.150 6 C -0.082 4.082 7 C -0.097 4.097 8 C -0.154 4.154 9 C 0.285 3.715 10 O -0.484 6.484 11 N -0.328 5.328 12 C -0.059 4.059 13 C 0.126 3.874 14 H 0.048 0.952 15 C -0.212 4.212 16 C -0.566 4.566 17 H 0.062 0.938 18 C -0.177 4.177 19 N -0.579 5.579 20 Si 0.770 3.230 21 H -0.177 1.177 22 H -0.188 1.188 23 H -0.223 1.223 24 C -0.152 4.152 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.149 0.851 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.082 23.234 4.963 24.106 hybrid contribution 0.516 -1.219 0.126 1.330 sum -3.566 22.015 5.089 22.875 Atomic orbital electron populations 1.20836 0.89829 1.03490 1.02918 1.20216 0.97270 0.92978 0.98963 1.21334 0.94558 0.98040 1.01079 1.21422 0.94583 0.98435 0.99077 1.21255 1.00588 0.91955 1.01213 1.19843 0.93849 0.94639 0.99906 1.20221 1.00239 0.93812 0.95418 1.21618 1.01459 0.93143 0.99228 1.21462 0.79387 0.87735 0.82867 1.90613 1.57735 1.67320 1.32693 1.47990 1.55206 1.22649 1.06988 1.21835 1.00831 0.98185 0.85063 1.18954 0.89952 0.82169 0.96355 0.95249 1.22311 0.96913 1.00111 1.01829 1.21389 1.04331 0.94569 1.36285 0.93846 1.25671 1.01180 0.96006 0.94849 1.70006 1.40016 1.03838 1.44088 0.85955 0.80626 0.76508 0.79960 1.17739 1.18775 1.22288 1.21123 0.93734 0.98336 1.02028 0.90575 0.90190 0.91505 0.84108 0.83850 0.85113 0.92172 0.91026 0.86301 0.87875 0.93618 0.88025 0.90707 0.92440 0.94028 0.90967 0.92241 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.82 16 2 C -0.09 -1.73 5.88 -19.86 -0.12 -1.85 16 3 C -0.13 -2.14 9.70 22.27 0.22 -1.92 16 4 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 5 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 6 C -0.08 -1.86 5.13 -19.87 -0.10 -1.96 16 7 C -0.06 -1.57 4.63 29.85 0.14 -1.43 16 8 C -0.12 -3.07 4.23 29.85 0.13 -2.95 16 9 C 0.50 19.38 7.67 87.66 0.67 20.05 16 10 O -0.60 -28.87 15.31 -3.05 -0.05 -28.92 16 11 N -0.60 -24.24 2.75 -826.77 -2.28 -26.51 16 12 C 0.08 2.55 9.48 127.77 1.21 3.76 16 13 C 0.23 11.18 2.23 44.24 0.10 11.28 16 14 H 0.03 1.63 5.95 -2.38 -0.01 1.62 16 15 C -0.15 -6.38 8.65 71.98 0.62 -5.75 16 16 C -0.53 -30.10 8.95 25.60 0.23 -29.88 16 17 H 0.04 2.71 7.89 -2.91 -0.02 2.68 16 18 C 0.02 1.26 5.45 84.66 0.46 1.72 16 19 N -0.94 -58.29 13.96 21.45 0.30 -57.99 16 20 Si 0.94 45.61 24.37 68.60 1.67 47.28 16 21 H -0.25 -11.12 6.87 99.48 0.68 -10.44 16 22 H -0.26 -12.62 6.53 99.48 0.65 -11.97 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 C -0.13 -2.92 9.36 22.27 0.21 -2.72 16 25 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 27 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 28 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 29 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 31 H 0.06 1.81 8.04 -2.39 -0.02 1.79 16 32 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 33 H 0.12 2.47 7.40 -2.39 -0.02 2.45 16 34 H 0.10 2.53 8.11 -2.39 -0.02 2.51 16 35 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.10 2.16 6.44 -2.39 -0.02 2.14 16 37 H 0.07 2.26 6.42 -2.38 -0.02 2.25 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.04 1.79 3.28 -2.39 -0.01 1.78 16 40 H 0.07 2.73 6.66 -2.39 -0.02 2.71 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -73.44 337.42 5.48 -67.96 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.91 Total: 14.70 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 4.92 Total: -16.52 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.98 Total: -84.51 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.05 Total: -28.92 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.67 Total: 47.28 kcal Total: -73.44 5.48 -67.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.707 kcal (2) G-P(sol) polarization free energy of solvation -73.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds