Wall clock time and date at job start Mon Mar 30 2020 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99935 * 2 1 4 4 C 1.38213 * 120.00039 * 180.28115 * 3 2 1 5 5 C 1.38257 * 119.99945 * 359.74428 * 4 3 2 6 6 C 1.38211 * 120.00115 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00166 * 179.75270 * 2 1 3 8 8 C 1.50703 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.53000 * 109.46912 * 84.73029 * 8 7 2 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 O 1.21273 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00050 * 359.97438 * 12 10 9 14 14 C 1.46496 * 120.00054 * 179.97438 * 12 10 9 15 15 H 1.09003 * 109.47075 * 0.02562 * 14 12 10 16 16 C 1.52994 * 109.47570 * 239.99998 * 14 12 10 17 17 C 1.50708 * 109.46992 * 119.99712 * 14 12 10 18 18 H 1.08000 * 120.00016 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99760 * 179.97438 * 17 14 12 20 20 N 1.31513 * 119.99986 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99706 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47002 * 60.00296 * 21 19 17 23 23 H 1.48503 * 109.46957 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47024 * 300.00244 * 21 19 17 25 25 H 1.09004 * 109.46714 * 270.24685 * 1 2 3 26 26 H 1.09001 * 109.47281 * 30.24784 * 1 2 3 27 27 H 1.09001 * 109.47263 * 150.25366 * 1 2 3 28 28 H 1.08001 * 120.00281 * 0.04654 * 3 2 1 29 29 H 1.07998 * 120.00425 * 179.77172 * 4 3 2 30 30 H 1.07998 * 120.00075 * 180.02562 * 5 4 3 31 31 H 1.07999 * 120.00450 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47152 * 324.72801 * 8 7 2 33 33 H 1.09001 * 109.46980 * 204.72902 * 8 7 2 34 34 H 1.09001 * 109.47194 * 299.99742 * 9 8 7 35 35 H 1.08992 * 109.47399 * 59.99914 * 9 8 7 36 36 H 1.09003 * 109.46862 * 90.00175 * 13 12 10 37 37 H 1.08996 * 109.47101 * 210.00301 * 13 12 10 38 38 H 1.09003 * 109.46885 * 329.99908 * 13 12 10 39 39 H 1.09003 * 109.47229 * 300.00283 * 16 14 12 40 40 H 1.08998 * 109.47324 * 59.99444 * 16 14 12 41 41 H 1.09000 * 109.47515 * 179.97438 * 16 14 12 42 42 H 0.97002 * 119.99647 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0052 8 6 1.4446 -2.5020 0.0114 9 6 1.0743 -2.8839 -1.4232 10 6 0.3203 -4.1888 -1.4169 11 8 0.1011 -4.7574 -0.3684 12 7 -0.1096 -4.7243 -2.5766 13 6 0.1557 -4.0376 -3.8433 14 6 -0.8421 -5.9929 -2.5706 15 1 -0.9424 -6.3497 -1.5455 16 6 -0.0773 -7.0274 -3.3986 17 6 -2.2110 -5.7854 -3.1659 18 1 -2.5056 -4.8065 -3.5142 19 6 -3.0868 -6.8456 -3.2667 20 7 -2.7277 -8.0377 -2.8429 21 14 -4.7832 -6.5885 -4.0052 22 1 -4.6467 -6.1020 -5.4015 23 1 -5.5258 -7.8745 -3.9989 24 1 -5.5260 -5.5846 -3.2015 25 1 -0.3633 0.0044 1.0277 26 1 -0.3634 0.8878 -0.5177 27 1 -0.3634 -0.8923 -0.5099 28 1 1.6583 2.1327 0.0008 29 1 4.1204 2.1326 -0.0096 30 1 5.3516 0.0000 -0.0106 31 1 4.1206 -2.1322 -0.0005 32 1 0.5365 -2.3945 0.6047 33 1 2.0715 -3.2814 0.4446 34 1 0.4474 -2.1046 -1.8564 35 1 1.9823 -2.9914 -2.0164 36 1 1.1077 -4.3795 -4.2494 37 1 -0.6424 -4.2603 -4.5514 38 1 0.1991 -2.9621 -3.6714 39 1 0.0226 -6.6704 -4.4237 40 1 0.9128 -7.1775 -2.9682 41 1 -0.6221 -7.9715 -3.3938 42 1 -3.3438 -8.7835 -2.9142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:14 Heat of formation + Delta-G solvation = -28.086544 kcal Electronic energy + Delta-G solvation = -21080.833055 eV Core-core repulsion = 18025.141363 eV Total energy + Delta-G solvation = -3055.691693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.80747 -38.86255 -35.40752 -34.07770 -32.83607 -32.42102 -30.18382 -28.88250 -26.99994 -26.05413 -25.22261 -24.42613 -22.02853 -21.05873 -20.26320 -18.19157 -16.75717 -16.39763 -16.06455 -15.82012 -15.29991 -14.79842 -14.72982 -14.33509 -13.75460 -13.30756 -13.19440 -13.01012 -12.66403 -12.49420 -12.28539 -12.23531 -11.98084 -11.82544 -11.51966 -11.36616 -11.22071 -11.05234 -10.85400 -10.82772 -10.68863 -10.61192 -10.24817 -10.15448 -9.18091 -8.97134 -8.80739 -8.55241 -8.40682 -7.55622 -6.06305 -4.14459 1.29794 1.33287 3.27962 3.33199 3.34217 3.44618 3.67015 4.03208 4.40528 4.76288 4.77212 4.91257 4.96889 5.22291 5.23417 5.25899 5.28743 5.45728 5.49198 5.61825 5.62366 5.68619 5.81217 5.91902 5.96288 6.01894 6.07231 6.20089 6.37608 6.39147 6.43736 6.46454 6.69331 6.77210 6.85550 6.97798 7.08864 7.45420 7.55869 7.73265 8.03405 8.21920 8.56969 8.84567 9.09990 9.52077 10.98968 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030077 B = 0.003726 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.716798 B = 7512.579588 C = 7902.446630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.127 4.127 6 C -0.113 4.113 7 C -0.076 4.076 8 C -0.067 4.067 9 C -0.133 4.133 10 C 0.502 3.498 11 O -0.555 6.555 12 N -0.594 5.594 13 C 0.084 3.916 14 C 0.257 3.743 15 H 0.063 0.937 16 C -0.146 4.146 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.029 0.971 40 H 0.010 0.990 41 H 0.093 0.907 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.945 16.049 1.911 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.145 4.145 6 C -0.132 4.132 7 C -0.076 4.076 8 C -0.105 4.105 9 C -0.173 4.173 10 C 0.288 3.712 11 O -0.434 6.434 12 N -0.325 5.325 13 C -0.060 4.060 14 C 0.157 3.843 15 H 0.081 0.919 16 C -0.204 4.204 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.029 0.971 41 H 0.111 0.889 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.734 15.522 2.452 19.030 hybrid contribution -0.824 0.196 -0.628 1.054 sum 9.910 15.717 1.824 18.670 Atomic orbital electron populations 1.20912 0.91170 1.03177 1.02623 1.19838 0.96150 0.92576 0.99506 1.21009 0.94250 0.97367 1.01306 1.21076 0.94313 0.97897 1.01125 1.21094 0.99660 0.92581 1.01122 1.21098 0.93676 0.98176 1.00202 1.19903 0.93679 0.94810 0.99241 1.20361 1.00639 0.93120 0.96339 1.21675 1.00990 0.96518 0.98109 1.20429 0.79992 0.86556 0.84177 1.90640 1.58446 1.63324 1.31011 1.48249 1.54486 1.24710 1.05082 1.21595 1.01045 0.95601 0.87794 1.18917 0.88963 0.77924 0.98507 0.91938 1.22077 0.97081 1.03274 0.98000 1.21294 0.98334 0.95493 1.41394 0.92331 1.24896 0.98522 0.95040 0.95327 1.69873 1.36067 1.00209 1.46460 0.86557 0.83863 0.77439 0.79530 1.20240 1.21168 1.20243 0.91039 0.91657 0.90695 0.86320 0.86443 0.86354 0.86019 0.89983 0.90321 0.89416 0.89591 0.93968 0.90176 0.92810 0.95214 0.97082 0.88888 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.22 36.00 0.33 -0.97 16 2 C -0.08 -0.94 5.88 -104.63 -0.62 -1.55 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.64 16 4 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 5 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.11 -1.29 9.68 -39.58 -0.38 -1.67 16 7 C -0.08 -0.95 5.13 -104.62 -0.54 -1.49 16 8 C -0.07 -0.94 3.94 -27.88 -0.11 -1.05 16 9 C -0.13 -1.97 4.04 -27.88 -0.11 -2.08 16 10 C 0.50 10.30 7.67 -10.98 -0.08 10.21 16 11 O -0.55 -13.60 15.31 5.56 0.09 -13.52 16 12 N -0.59 -12.72 2.75 -175.26 -0.48 -13.20 16 13 C 0.08 1.41 9.24 59.85 0.55 1.96 16 14 C 0.26 6.63 2.64 -69.08 -0.18 6.44 16 15 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 16 C -0.15 -3.53 8.97 37.15 0.33 -3.20 16 17 C -0.53 -14.27 7.99 -34.44 -0.28 -14.55 16 18 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.27 11.32 55.43 0.63 -24.65 16 21 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.07 0.88 5.40 -51.93 -0.28 0.60 16 28 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.08 1.24 6.96 -51.93 -0.36 0.87 16 33 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 34 H 0.09 1.18 6.14 -51.93 -0.32 0.87 16 35 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 38 H 0.05 0.74 6.44 -51.93 -0.33 0.40 16 39 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -31.18 338.84 -8.51 -39.69 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.47 Total: 1.76 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.36 Total: -11.22 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.14 Total: -37.84 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.18 -8.51 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.601 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds