Wall clock time and date at job start Mon Mar 30 2020 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99935 * 2 1 4 4 C 1.38213 * 120.00039 * 180.28115 * 3 2 1 5 5 C 1.38257 * 119.99945 * 359.74428 * 4 3 2 6 6 C 1.38211 * 120.00115 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00166 * 179.75270 * 2 1 3 8 8 C 1.50703 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.53000 * 109.46912 * 84.73029 * 8 7 2 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 O 1.21273 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00050 * 359.97438 * 12 10 9 14 14 C 1.46496 * 120.00054 * 179.97438 * 12 10 9 15 15 H 1.09003 * 109.47075 * 0.02562 * 14 12 10 16 16 C 1.52994 * 109.47570 * 239.99998 * 14 12 10 17 17 C 1.50708 * 109.46992 * 119.99712 * 14 12 10 18 18 H 1.08000 * 120.00016 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99760 * 179.97438 * 17 14 12 20 20 N 1.31513 * 119.99986 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99706 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47002 * 60.00296 * 21 19 17 23 23 H 1.48503 * 109.46957 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47024 * 300.00244 * 21 19 17 25 25 H 1.09004 * 109.46714 * 270.24685 * 1 2 3 26 26 H 1.09001 * 109.47281 * 30.24784 * 1 2 3 27 27 H 1.09001 * 109.47263 * 150.25366 * 1 2 3 28 28 H 1.08001 * 120.00281 * 0.04654 * 3 2 1 29 29 H 1.07998 * 120.00425 * 179.77172 * 4 3 2 30 30 H 1.07998 * 120.00075 * 180.02562 * 5 4 3 31 31 H 1.07999 * 120.00450 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47152 * 324.72801 * 8 7 2 33 33 H 1.09001 * 109.46980 * 204.72902 * 8 7 2 34 34 H 1.09001 * 109.47194 * 299.99742 * 9 8 7 35 35 H 1.08992 * 109.47399 * 59.99914 * 9 8 7 36 36 H 1.09003 * 109.46862 * 90.00175 * 13 12 10 37 37 H 1.08996 * 109.47101 * 210.00301 * 13 12 10 38 38 H 1.09003 * 109.46885 * 329.99908 * 13 12 10 39 39 H 1.09003 * 109.47229 * 300.00283 * 16 14 12 40 40 H 1.08998 * 109.47324 * 59.99444 * 16 14 12 41 41 H 1.09000 * 109.47515 * 179.97438 * 16 14 12 42 42 H 0.97002 * 119.99647 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0052 8 6 1.4446 -2.5020 0.0114 9 6 1.0743 -2.8839 -1.4232 10 6 0.3203 -4.1888 -1.4169 11 8 0.1011 -4.7574 -0.3684 12 7 -0.1096 -4.7243 -2.5766 13 6 0.1557 -4.0376 -3.8433 14 6 -0.8421 -5.9929 -2.5706 15 1 -0.9424 -6.3497 -1.5455 16 6 -0.0773 -7.0274 -3.3986 17 6 -2.2110 -5.7854 -3.1659 18 1 -2.5056 -4.8065 -3.5142 19 6 -3.0868 -6.8456 -3.2667 20 7 -2.7277 -8.0377 -2.8429 21 14 -4.7832 -6.5885 -4.0052 22 1 -4.6467 -6.1020 -5.4015 23 1 -5.5258 -7.8745 -3.9989 24 1 -5.5260 -5.5846 -3.2015 25 1 -0.3633 0.0044 1.0277 26 1 -0.3634 0.8878 -0.5177 27 1 -0.3634 -0.8923 -0.5099 28 1 1.6583 2.1327 0.0008 29 1 4.1204 2.1326 -0.0096 30 1 5.3516 0.0000 -0.0106 31 1 4.1206 -2.1322 -0.0005 32 1 0.5365 -2.3945 0.6047 33 1 2.0715 -3.2814 0.4446 34 1 0.4474 -2.1046 -1.8564 35 1 1.9823 -2.9914 -2.0164 36 1 1.1077 -4.3795 -4.2494 37 1 -0.6424 -4.2603 -4.5514 38 1 0.1991 -2.9621 -3.6714 39 1 0.0226 -6.6704 -4.4237 40 1 0.9128 -7.1775 -2.9682 41 1 -0.6221 -7.9715 -3.3938 42 1 -3.3438 -8.7835 -2.9142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:14 Heat of formation + Delta-G solvation = -44.660098 kcal Electronic energy + Delta-G solvation = -21081.551738 eV Core-core repulsion = 18025.141363 eV Total energy + Delta-G solvation = -3056.410376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.98877 -40.17537 -37.19397 -35.21109 -34.70863 -33.29949 -31.74780 -30.25207 -27.85141 -27.53110 -27.30625 -25.63756 -23.01691 -22.54622 -21.29677 -19.83686 -18.52947 -17.94516 -17.17192 -17.08685 -16.85906 -16.13889 -16.04600 -15.63262 -14.87217 -14.72854 -14.30124 -14.22736 -13.98381 -13.77153 -13.66662 -13.47129 -13.29375 -13.02716 -12.99129 -12.86475 -12.74480 -12.63363 -12.51695 -12.20574 -12.15548 -12.10987 -11.70302 -11.66044 -11.19846 -10.65870 -10.46472 -9.64852 -9.41682 -9.31181 -8.14487 -6.31439 0.47802 0.53732 1.41412 1.44002 1.51395 1.83277 2.33109 2.51484 2.90464 3.13271 3.65309 3.92554 4.05782 4.09725 4.14319 4.25359 4.34064 4.41977 4.52799 4.63397 4.66260 4.75503 4.77150 4.80263 4.86148 4.89478 4.98485 5.02160 5.04699 5.08611 5.10819 5.27618 5.39545 5.47659 5.60697 5.65519 5.67393 5.67881 5.83059 6.04577 6.16837 6.19145 6.76744 6.85850 7.32782 7.50460 8.89792 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030077 B = 0.003726 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.716798 B = 7512.579588 C = 7902.446630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.092 4.092 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.130 4.130 6 C -0.124 4.124 7 C -0.092 4.092 8 C -0.059 4.059 9 C -0.114 4.114 10 C 0.491 3.509 11 O -0.606 6.606 12 N -0.603 5.603 13 C 0.080 3.920 14 C 0.260 3.740 15 H 0.007 0.993 16 C -0.131 4.131 17 C -0.540 4.540 18 H 0.062 0.938 19 C 0.014 3.986 20 N -0.919 5.919 21 Si 0.966 3.034 22 H -0.261 1.261 23 H -0.284 1.284 24 H -0.276 1.276 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.139 0.861 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.126 0.874 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.018 0.982 41 H 0.067 0.933 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.814 18.913 0.450 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.142 4.142 7 C -0.093 4.093 8 C -0.096 4.096 9 C -0.154 4.154 10 C 0.281 3.719 11 O -0.489 6.489 12 N -0.333 5.333 13 C -0.063 4.063 14 C 0.158 3.842 15 H 0.025 0.975 16 C -0.190 4.190 17 C -0.578 4.578 18 H 0.080 0.920 19 C -0.186 4.186 20 N -0.558 5.558 21 Si 0.790 3.210 22 H -0.186 1.186 23 H -0.210 1.210 24 H -0.202 1.202 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.085 0.915 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.626 18.419 0.958 21.802 hybrid contribution -1.033 -0.661 -0.118 1.232 sum 10.593 17.758 0.841 20.695 Atomic orbital electron populations 1.20906 0.90974 1.03227 1.02684 1.19986 0.96509 0.92871 0.99885 1.21293 0.94822 0.97606 1.00668 1.21454 0.94286 0.98920 0.99599 1.21398 1.00924 0.92152 1.00260 1.21258 0.93348 0.99221 1.00411 1.19755 0.94140 0.93968 1.01391 1.20198 0.99874 0.94058 0.95516 1.21620 1.01281 0.93223 0.99260 1.21453 0.79489 0.87907 0.83048 1.90612 1.60363 1.65083 1.32834 1.48277 1.54019 1.23746 1.07239 1.21846 1.01634 0.97413 0.85360 1.18513 0.89861 0.80450 0.95378 0.97510 1.21864 0.96761 1.01645 0.98737 1.21572 0.99201 0.95692 1.41353 0.91979 1.25765 1.02411 0.94716 0.95690 1.70024 1.37368 1.01002 1.47390 0.85498 0.78919 0.77267 0.79271 1.18585 1.20965 1.20194 0.91089 0.89877 0.92249 0.84294 0.83803 0.84117 0.85557 0.91789 0.91759 0.87411 0.87107 0.91696 0.91332 0.89211 0.93474 0.96268 0.91469 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.22 71.24 0.66 -1.78 16 2 C -0.09 -1.99 5.88 -19.87 -0.12 -2.10 16 3 C -0.13 -2.24 9.70 22.27 0.22 -2.02 16 4 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 5 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 6 C -0.12 -2.61 9.68 22.27 0.22 -2.39 16 7 C -0.09 -2.19 5.13 -19.86 -0.10 -2.30 16 8 C -0.06 -1.67 3.94 29.85 0.12 -1.55 16 9 C -0.11 -3.27 4.04 29.85 0.12 -3.15 16 10 C 0.49 20.49 7.67 87.66 0.67 21.16 16 11 O -0.61 -31.31 15.31 -3.01 -0.05 -31.35 16 12 N -0.60 -25.81 2.75 -826.78 -2.28 -28.09 16 13 C 0.08 2.51 9.24 127.77 1.18 3.69 16 14 C 0.26 13.83 2.64 44.25 0.12 13.94 16 15 H 0.01 0.44 6.90 -2.39 -0.02 0.42 16 16 C -0.13 -6.48 8.97 71.98 0.65 -5.84 16 17 C -0.54 -29.68 7.99 25.60 0.20 -29.47 16 18 H 0.06 3.28 7.33 -2.91 -0.02 3.26 16 19 C 0.01 0.75 5.30 84.65 0.45 1.20 16 20 N -0.92 -53.74 11.32 21.45 0.24 -53.49 16 21 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 27 H 0.06 1.36 5.40 -2.39 -0.01 1.35 16 28 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 29 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.06 2.01 6.96 -2.39 -0.02 2.00 16 33 H 0.06 1.97 8.01 -2.39 -0.02 1.95 16 34 H 0.11 2.68 6.14 -2.39 -0.01 2.66 16 35 H 0.11 2.65 8.11 -2.39 -0.02 2.63 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 2.34 7.02 -2.39 -0.02 2.32 16 38 H 0.09 2.17 6.44 -2.39 -0.02 2.15 16 39 H 0.05 2.10 7.67 -2.39 -0.02 2.08 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 42 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -70.47 338.84 5.76 -64.70 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.99 Total: 17.36 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 4.82 Total: -14.39 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -2.03 Total: -81.58 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.05 Total: -31.35 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -70.47 5.76 -64.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.042 kcal (2) G-P(sol) polarization free energy of solvation -70.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds