Wall clock time and date at job start Mon Mar 30 2020 02:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38261 * 120.00146 * 2 1 4 4 C 1.38214 * 120.00030 * 179.76900 * 3 2 1 5 5 C 1.38255 * 119.99750 * 0.48312 * 4 3 2 6 6 C 1.50703 * 119.99765 * 179.76509 * 5 4 3 7 7 C 1.38213 * 120.00173 * 359.49434 * 5 4 3 8 8 C 1.50697 * 120.00024 * 180.27428 * 7 5 4 9 9 C 1.50700 * 109.47270 * 85.00040 * 8 7 5 10 10 O 1.21287 * 119.99720 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00391 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99760 * 359.97438 * 11 9 8 13 13 C 1.46497 * 120.00409 * 179.97438 * 11 9 8 14 14 H 1.08999 * 109.46847 * 0.02562 * 13 11 9 15 15 C 1.53000 * 109.47414 * 239.99843 * 13 11 9 16 16 C 1.50702 * 109.47057 * 119.99612 * 13 11 9 17 17 H 1.08001 * 119.99959 * 5.46211 * 16 13 11 18 18 C 1.37881 * 119.99939 * 185.45674 * 16 13 11 19 19 N 1.31510 * 119.99883 * 9.62247 * 18 16 13 20 20 Si 1.86800 * 120.00078 * 189.62027 * 18 16 13 21 21 H 1.48498 * 109.47149 * 84.99506 * 20 18 16 22 22 H 1.48497 * 109.47110 * 204.99936 * 20 18 16 23 23 H 1.48509 * 109.47006 * 324.99699 * 20 18 16 24 24 C 1.38209 * 120.00025 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.47074 * 270.02174 * 1 2 3 26 26 H 1.09001 * 109.47067 * 30.02148 * 1 2 3 27 27 H 1.08997 * 109.46833 * 150.01773 * 1 2 3 28 28 H 1.08005 * 119.99630 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99860 * 180.25405 * 4 3 2 30 30 H 1.08994 * 109.47413 * 269.72809 * 6 5 4 31 31 H 1.09001 * 109.46898 * 149.72731 * 6 5 4 32 32 H 1.09004 * 109.47168 * 29.72863 * 6 5 4 33 33 H 1.08995 * 109.47543 * 205.00517 * 8 7 5 34 34 H 1.09006 * 109.47111 * 325.00034 * 8 7 5 35 35 H 1.08998 * 109.47306 * 90.00471 * 12 11 9 36 36 H 1.09002 * 109.47089 * 210.00178 * 12 11 9 37 37 H 1.09002 * 109.47418 * 330.00583 * 12 11 9 38 38 H 1.08993 * 109.46818 * 63.28474 * 15 13 11 39 39 H 1.08996 * 109.47072 * 183.28745 * 15 13 11 40 40 H 1.08997 * 109.46809 * 303.28743 * 15 13 11 41 41 H 0.97005 * 120.00181 * 179.97438 * 19 18 16 42 42 H 1.08004 * 120.00313 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 0.0048 5 6 4.2717 0.0000 -0.0004 6 6 5.7787 0.0000 -0.0005 7 6 3.5806 -1.1970 0.0000 8 6 4.3341 -2.5020 0.0005 9 6 4.6925 -2.8747 1.4161 10 8 4.3684 -2.1513 2.3341 11 7 5.3741 -4.0111 1.6619 12 6 5.7660 -4.8845 0.5529 13 6 5.7230 -4.3730 3.0379 14 1 5.3503 -3.6090 3.7201 15 6 7.2439 -4.4759 3.1682 16 6 5.0983 -5.7006 3.3818 17 1 4.5757 -6.2643 2.6232 18 6 5.1942 -6.1958 4.6651 19 7 5.6602 -5.4342 5.6306 20 14 4.6621 -7.9484 5.0321 21 1 5.7839 -8.8773 4.7422 22 1 4.2833 -8.0612 6.4635 23 1 3.4961 -8.3000 4.1823 24 6 2.1980 -1.1969 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5136 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1327 0.0090 30 1 6.1420 -0.0004 -1.0281 31 1 6.1420 -0.8898 0.5136 32 1 6.1421 0.8902 0.5130 33 1 3.7093 -3.2826 -0.4335 34 1 5.2448 -2.3960 -0.5890 35 1 6.7496 -4.5891 0.1878 36 1 5.8022 -5.9174 0.8992 37 1 5.0379 -4.7969 -0.2535 38 1 7.6918 -3.5009 2.9763 39 1 7.5010 -4.8019 4.1760 40 1 7.6225 -5.1982 2.4450 41 1 5.7273 -5.7824 6.5335 42 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:54 Heat of formation + Delta-G solvation = -26.618866 kcal Electronic energy + Delta-G solvation = -21458.379720 eV Core-core repulsion = 18402.751671 eV Total energy + Delta-G solvation = -3055.628049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.89073 -38.51786 -35.30635 -33.99809 -32.85960 -32.05011 -29.68860 -29.16796 -27.33273 -26.01532 -25.16595 -24.64947 -22.29659 -21.25457 -19.85471 -18.13710 -16.60033 -16.20500 -15.87248 -15.64475 -15.21398 -14.62904 -14.38535 -14.13125 -13.75082 -13.16796 -12.97851 -12.86888 -12.67296 -12.57936 -12.41130 -12.31623 -11.83603 -11.75613 -11.57852 -11.50489 -11.34051 -10.99297 -10.90807 -10.77953 -10.75142 -10.64842 -10.25890 -10.16339 -9.22344 -8.96307 -8.49954 -8.38431 -8.16433 -7.55785 -6.07337 -4.12109 1.52965 1.59913 3.27317 3.33991 3.35597 3.46212 3.79102 4.16164 4.42339 4.85448 4.92171 5.02226 5.16333 5.23824 5.29574 5.36423 5.42973 5.57310 5.63159 5.67381 5.68496 5.74559 5.79797 5.87846 5.90829 6.03398 6.06630 6.29238 6.35884 6.39801 6.62243 6.69229 6.74724 6.77480 6.87379 7.00966 7.22183 7.38152 7.58002 7.72155 7.95499 8.19680 8.56879 8.87734 9.12715 9.52951 11.00026 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022994 B = 0.004515 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.393004 B = 6199.387579 C = 6713.089198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.075 4.075 6 C -0.115 4.115 7 C -0.051 4.051 8 C -0.106 4.106 9 C 0.506 3.494 10 O -0.541 6.541 11 N -0.596 5.596 12 C 0.082 3.918 13 C 0.256 3.744 14 H 0.069 0.931 15 C -0.139 4.139 16 C -0.529 4.529 17 H 0.059 0.941 18 C 0.067 3.933 19 N -0.884 5.884 20 Si 0.894 3.106 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.104 4.104 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.263 0.737 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 8.472 -14.547 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.075 4.075 6 C -0.172 4.172 7 C -0.051 4.051 8 C -0.146 4.146 9 C 0.292 3.708 10 O -0.419 6.419 11 N -0.327 5.327 12 C -0.062 4.062 13 C 0.156 3.844 14 H 0.087 0.913 15 C -0.198 4.198 16 C -0.568 4.568 17 H 0.077 0.923 18 C -0.136 4.136 19 N -0.521 5.521 20 Si 0.722 3.278 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.122 4.122 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.252 8.832 -13.831 16.730 hybrid contribution -0.206 -1.141 0.296 1.196 sum -3.458 7.691 -13.536 15.948 Atomic orbital electron populations 1.20748 0.91506 1.02248 1.02255 1.19791 0.95795 0.93134 1.00747 1.20900 0.94125 0.97183 1.01958 1.20904 0.94114 0.97173 1.01421 1.19662 0.95866 0.92564 0.99399 1.20804 0.91547 1.03257 1.01565 1.19215 0.93319 0.93492 0.99096 1.20782 1.01292 0.95641 0.96855 1.20207 0.78935 0.81643 0.90029 1.90684 1.53922 1.51172 1.46100 1.48223 1.54289 1.20609 1.09628 1.21612 0.98407 0.96842 0.89345 1.18924 0.91562 0.97166 0.76791 0.91280 1.22001 0.98193 0.97298 1.02309 1.21276 1.35874 1.03999 0.95641 0.92261 1.24901 0.95186 0.97685 0.95835 1.69975 1.45966 1.35289 1.00897 0.86582 0.78878 0.84886 0.77485 1.20489 1.21207 1.19997 1.20844 0.93379 0.97547 1.00465 0.91289 0.91919 0.91762 0.86546 0.86398 0.91507 0.91292 0.91651 0.88719 0.88635 0.93957 0.90169 0.92806 0.96610 0.90654 0.94984 0.92688 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.00 0.36 -0.81 16 2 C -0.09 -1.29 5.88 -104.62 -0.62 -1.91 16 3 C -0.12 -1.62 9.70 -39.58 -0.38 -2.00 16 4 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 5 C -0.07 -1.13 5.88 -104.62 -0.62 -1.74 16 6 C -0.12 -1.52 9.22 36.01 0.33 -1.19 16 7 C -0.05 -0.81 4.37 -104.63 -0.46 -1.27 16 8 C -0.11 -1.63 3.70 -29.04 -0.11 -1.74 16 9 C 0.51 10.56 6.89 -10.99 -0.08 10.48 16 10 O -0.54 -13.75 15.36 5.55 0.09 -13.66 16 11 N -0.60 -12.69 2.75 -175.26 -0.48 -13.17 16 12 C 0.08 1.34 9.16 59.85 0.55 1.89 16 13 C 0.26 6.57 2.50 -69.08 -0.17 6.40 16 14 H 0.07 2.10 6.84 -51.93 -0.36 1.74 16 15 C -0.14 -3.29 9.12 37.16 0.34 -2.95 16 16 C -0.53 -14.37 8.01 -34.44 -0.28 -14.64 16 17 H 0.06 1.57 7.16 -52.49 -0.38 1.20 16 18 C 0.07 1.85 5.17 -17.82 -0.09 1.75 16 19 N -0.88 -25.56 12.16 55.43 0.67 -24.89 16 20 Si 0.89 21.06 29.55 -169.99 -5.02 16.04 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 24 C -0.10 -1.58 9.34 -39.58 -0.37 -1.95 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.04 6.16 -51.93 -0.32 0.72 16 32 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.09 1.27 7.31 -51.93 -0.38 0.89 16 34 H 0.10 1.24 6.96 -51.93 -0.36 0.88 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.40 6.92 -51.93 -0.36 1.04 16 37 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 1.94 6.84 -51.93 -0.36 1.59 16 40 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -32.49 341.30 -8.16 -40.65 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.59 Total: 1.56 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.97 Total: -11.67 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.19 Total: -38.05 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.49 -8.16 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.026 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds