Wall clock time and date at job start Mon Mar 30 2020 02:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38261 * 120.00146 * 2 1 4 4 C 1.38214 * 120.00030 * 179.76900 * 3 2 1 5 5 C 1.38255 * 119.99750 * 0.48312 * 4 3 2 6 6 C 1.50703 * 119.99765 * 179.76509 * 5 4 3 7 7 C 1.38213 * 120.00173 * 359.49434 * 5 4 3 8 8 C 1.50697 * 120.00024 * 180.27428 * 7 5 4 9 9 C 1.50700 * 109.47270 * 85.00040 * 8 7 5 10 10 O 1.21287 * 119.99720 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00391 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99760 * 359.97438 * 11 9 8 13 13 C 1.46497 * 120.00409 * 179.97438 * 11 9 8 14 14 H 1.08999 * 109.46847 * 0.02562 * 13 11 9 15 15 C 1.53000 * 109.47414 * 239.99843 * 13 11 9 16 16 C 1.50702 * 109.47057 * 119.99612 * 13 11 9 17 17 H 1.08001 * 119.99959 * 5.46211 * 16 13 11 18 18 C 1.37881 * 119.99939 * 185.45674 * 16 13 11 19 19 N 1.31510 * 119.99883 * 9.62247 * 18 16 13 20 20 Si 1.86800 * 120.00078 * 189.62027 * 18 16 13 21 21 H 1.48498 * 109.47149 * 84.99506 * 20 18 16 22 22 H 1.48497 * 109.47110 * 204.99936 * 20 18 16 23 23 H 1.48509 * 109.47006 * 324.99699 * 20 18 16 24 24 C 1.38209 * 120.00025 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.47074 * 270.02174 * 1 2 3 26 26 H 1.09001 * 109.47067 * 30.02148 * 1 2 3 27 27 H 1.08997 * 109.46833 * 150.01773 * 1 2 3 28 28 H 1.08005 * 119.99630 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99860 * 180.25405 * 4 3 2 30 30 H 1.08994 * 109.47413 * 269.72809 * 6 5 4 31 31 H 1.09001 * 109.46898 * 149.72731 * 6 5 4 32 32 H 1.09004 * 109.47168 * 29.72863 * 6 5 4 33 33 H 1.08995 * 109.47543 * 205.00517 * 8 7 5 34 34 H 1.09006 * 109.47111 * 325.00034 * 8 7 5 35 35 H 1.08998 * 109.47306 * 90.00471 * 12 11 9 36 36 H 1.09002 * 109.47089 * 210.00178 * 12 11 9 37 37 H 1.09002 * 109.47418 * 330.00583 * 12 11 9 38 38 H 1.08993 * 109.46818 * 63.28474 * 15 13 11 39 39 H 1.08996 * 109.47072 * 183.28745 * 15 13 11 40 40 H 1.08997 * 109.46809 * 303.28743 * 15 13 11 41 41 H 0.97005 * 120.00181 * 179.97438 * 19 18 16 42 42 H 1.08004 * 120.00313 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 0.0048 5 6 4.2717 0.0000 -0.0004 6 6 5.7787 0.0000 -0.0005 7 6 3.5806 -1.1970 0.0000 8 6 4.3341 -2.5020 0.0005 9 6 4.6925 -2.8747 1.4161 10 8 4.3684 -2.1513 2.3341 11 7 5.3741 -4.0111 1.6619 12 6 5.7660 -4.8845 0.5529 13 6 5.7230 -4.3730 3.0379 14 1 5.3503 -3.6090 3.7201 15 6 7.2439 -4.4759 3.1682 16 6 5.0983 -5.7006 3.3818 17 1 4.5757 -6.2643 2.6232 18 6 5.1942 -6.1958 4.6651 19 7 5.6602 -5.4342 5.6306 20 14 4.6621 -7.9484 5.0321 21 1 5.7839 -8.8773 4.7422 22 1 4.2833 -8.0612 6.4635 23 1 3.4961 -8.3000 4.1823 24 6 2.1980 -1.1969 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5136 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1327 0.0090 30 1 6.1420 -0.0004 -1.0281 31 1 6.1420 -0.8898 0.5136 32 1 6.1421 0.8902 0.5130 33 1 3.7093 -3.2826 -0.4335 34 1 5.2448 -2.3960 -0.5890 35 1 6.7496 -4.5891 0.1878 36 1 5.8022 -5.9174 0.8992 37 1 5.0379 -4.7969 -0.2535 38 1 7.6918 -3.5009 2.9763 39 1 7.5010 -4.8019 4.1760 40 1 7.6225 -5.1982 2.4450 41 1 5.7273 -5.7824 6.5335 42 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:54 Heat of formation + Delta-G solvation = -44.878845 kcal Electronic energy + Delta-G solvation = -21459.171532 eV Core-core repulsion = 18402.751671 eV Total energy + Delta-G solvation = -3056.419861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19815 -39.91734 -37.09057 -35.12396 -34.72200 -33.28524 -31.49911 -30.11402 -28.60664 -27.48332 -27.25446 -25.62958 -23.66055 -22.70451 -21.12860 -19.71050 -18.52211 -17.85719 -17.10179 -17.02522 -16.67248 -16.08940 -15.87189 -15.51974 -14.89573 -14.55698 -14.28439 -14.09482 -13.98820 -13.87624 -13.67940 -13.55502 -13.47165 -13.06253 -12.94365 -12.77039 -12.75955 -12.67760 -12.63138 -12.32182 -12.25995 -12.08438 -11.79843 -11.74494 -11.22848 -10.65047 -10.47829 -9.62990 -9.29428 -9.22184 -8.16658 -6.30111 0.45554 0.52563 1.41240 1.42186 1.51749 1.86853 2.33981 2.50527 2.90784 3.12345 3.72121 3.89511 3.99357 4.06367 4.15563 4.33093 4.36063 4.48180 4.56198 4.63927 4.72925 4.74353 4.78058 4.80313 4.83839 4.85410 4.88490 4.92398 5.01811 5.06972 5.13034 5.26023 5.40245 5.47809 5.54743 5.57489 5.68034 5.72409 5.78479 6.02409 6.14127 6.20200 6.79058 6.88099 7.34323 7.53970 8.90206 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022994 B = 0.004515 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.393004 B = 6199.387579 C = 6713.089198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C -0.128 4.128 4 C -0.127 4.127 5 C -0.094 4.094 6 C -0.112 4.112 7 C -0.076 4.076 8 C -0.090 4.090 9 C 0.498 3.502 10 O -0.598 6.598 11 N -0.603 5.603 12 C 0.076 3.924 13 C 0.259 3.741 14 H 0.009 0.991 15 C -0.124 4.124 16 C -0.540 4.540 17 H 0.064 0.936 18 C 0.014 3.986 19 N -0.921 5.921 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.289 1.289 23 H -0.269 1.269 24 C -0.126 4.126 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.022 0.978 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.264 0.736 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 8.117 -16.959 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.145 4.145 4 C -0.145 4.145 5 C -0.094 4.094 6 C -0.168 4.168 7 C -0.077 4.077 8 C -0.129 4.129 9 C 0.287 3.713 10 O -0.480 6.480 11 N -0.334 5.334 12 C -0.066 4.066 13 C 0.157 3.843 14 H 0.027 0.973 15 C -0.183 4.183 16 C -0.578 4.578 17 H 0.082 0.918 18 C -0.185 4.185 19 N -0.559 5.559 20 Si 0.788 3.212 21 H -0.190 1.190 22 H -0.214 1.214 23 H -0.193 1.193 24 C -0.144 4.144 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.615 8.455 -16.298 18.713 hybrid contribution -0.116 -0.941 1.038 1.405 sum -3.731 7.514 -15.260 17.414 Atomic orbital electron populations 1.20791 0.89486 1.03768 1.02510 1.20194 0.97473 0.92904 0.99986 1.21296 0.94248 0.98171 1.00835 1.21259 0.94719 0.97697 1.00827 1.19986 0.96838 0.92955 0.99665 1.20800 0.90656 1.02335 1.03017 1.19402 0.93840 0.93953 1.00475 1.20726 1.02920 0.96300 0.92959 1.21168 0.77583 0.80647 0.91858 1.90648 1.55998 1.52877 1.48451 1.48244 1.54342 1.21666 1.09137 1.21902 1.00967 0.95223 0.88514 1.18509 0.92419 0.94775 0.78621 0.97274 1.21783 0.96945 0.98240 1.01329 1.21580 1.35818 1.04481 0.95937 0.91829 1.25782 0.95293 1.01774 0.95672 1.70128 1.47335 1.37218 1.01251 0.85496 0.78911 0.79802 0.76980 1.19005 1.21447 1.19314 1.21088 0.93569 0.98478 1.01256 0.91524 0.89784 0.90954 0.83866 0.84199 0.88759 0.93608 0.91124 0.86416 0.85829 0.91349 0.91240 0.89128 0.95849 0.93354 0.92608 0.92748 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 10.01 71.24 0.71 -1.40 16 2 C -0.11 -2.76 5.88 -19.87 -0.12 -2.88 16 3 C -0.13 -3.12 9.70 22.27 0.22 -2.90 16 4 C -0.13 -3.28 9.70 22.27 0.22 -3.06 16 5 C -0.09 -2.75 5.88 -19.87 -0.12 -2.87 16 6 C -0.11 -2.83 9.22 71.24 0.66 -2.17 16 7 C -0.08 -2.37 4.37 -19.87 -0.09 -2.46 16 8 C -0.09 -2.64 3.70 29.10 0.11 -2.53 16 9 C 0.50 21.00 6.89 87.66 0.60 21.61 16 10 O -0.60 -31.80 15.36 -3.05 -0.05 -31.85 16 11 N -0.60 -25.60 2.75 -826.79 -2.28 -27.88 16 12 C 0.08 2.31 9.16 127.77 1.17 3.48 16 13 C 0.26 13.70 2.50 44.25 0.11 13.82 16 14 H 0.01 0.60 6.84 -2.39 -0.02 0.58 16 15 C -0.12 -5.96 9.12 71.98 0.66 -5.31 16 16 C -0.54 -29.68 8.01 25.60 0.20 -29.47 16 17 H 0.06 3.36 7.16 -2.91 -0.02 3.34 16 18 C 0.01 0.81 5.17 84.66 0.44 1.24 16 19 N -0.92 -54.98 12.16 21.45 0.26 -54.72 16 20 Si 0.96 43.38 29.55 68.60 2.03 45.40 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 C -0.13 -3.76 9.34 22.27 0.21 -3.55 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 27 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 28 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.04 1.36 6.16 -2.39 -0.01 1.35 16 32 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 33 H 0.12 2.87 7.31 -2.39 -0.02 2.85 16 34 H 0.12 2.89 6.96 -2.38 -0.02 2.87 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.27 6.92 -2.39 -0.02 2.26 16 37 H 0.09 2.07 6.44 -2.39 -0.02 2.05 16 38 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 2.56 6.84 -2.39 -0.02 2.54 16 40 H 0.05 2.35 7.56 -2.39 -0.02 2.33 16 41 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 42 H 0.12 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -74.34 341.30 5.94 -68.40 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.99 Total: 19.10 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 4.98 Total: -18.46 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -2.01 Total: -82.59 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.05 Total: -31.85 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -74.34 5.94 -68.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.520 kcal (2) G-P(sol) polarization free energy of solvation -74.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds