Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38262 * 120.00269 * 2 1 4 4 C 1.38208 * 120.00141 * 180.02562 * 3 2 1 5 5 C 1.38254 * 120.00174 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00312 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47113 * 90.00227 * 6 5 4 8 8 O 1.21279 * 120.00235 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99900 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99912 * 359.97438 * 9 7 6 11 11 C 1.46495 * 120.00002 * 179.97438 * 9 7 6 12 12 H 1.09002 * 109.47308 * 359.97438 * 11 9 7 13 13 C 1.53001 * 109.47398 * 119.99746 * 11 9 7 14 14 C 1.50702 * 109.47171 * 239.99670 * 11 9 7 15 15 H 1.08001 * 120.00089 * 325.05166 * 14 11 9 16 16 C 1.37880 * 119.99796 * 145.04858 * 14 11 9 17 17 N 1.31514 * 119.99543 * 176.46253 * 16 14 11 18 18 Si 1.86794 * 120.00028 * 356.46680 * 16 14 11 19 19 H 1.48499 * 109.47255 * 274.92138 * 18 16 14 20 20 H 1.48497 * 109.47373 * 34.92801 * 18 16 14 21 21 H 1.48507 * 109.46963 * 154.92420 * 18 16 14 22 22 C 1.38223 * 119.99727 * 0.25801 * 5 4 3 23 23 C 1.38208 * 119.99809 * 180.02562 * 2 1 3 24 24 C 1.50705 * 120.00296 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47174 * 90.00261 * 1 2 3 26 26 H 1.08996 * 109.47661 * 210.00266 * 1 2 3 27 27 H 1.08999 * 109.47451 * 330.00526 * 1 2 3 28 28 H 1.08000 * 119.99612 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00146 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.46634 * 329.99940 * 6 5 4 31 31 H 1.09002 * 109.47344 * 210.00352 * 6 5 4 32 32 H 1.09003 * 109.47307 * 270.00158 * 10 9 7 33 33 H 1.09006 * 109.47299 * 30.00251 * 10 9 7 34 34 H 1.09005 * 109.47170 * 150.00291 * 10 9 7 35 35 H 1.09001 * 109.47150 * 305.54548 * 13 11 9 36 36 H 1.09004 * 109.47201 * 65.54154 * 13 11 9 37 37 H 1.08997 * 109.47748 * 185.54369 * 13 11 9 38 38 H 0.97005 * 119.99553 * 179.97438 * 17 16 14 39 39 H 1.08005 * 119.99836 * 179.72068 * 22 5 4 40 40 H 1.09002 * 109.46804 * 89.99513 * 24 23 2 41 41 H 1.09006 * 109.47162 * 209.99911 * 24 23 2 42 42 H 1.08999 * 109.46570 * 330.00029 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 -0.0001 -0.0017 7 6 6.2821 0.0005 1.4187 8 8 5.4947 0.0014 2.3411 9 7 7.6074 0.0011 1.6639 10 6 8.5585 0.0006 0.5497 11 6 8.0968 0.0022 3.0447 12 1 7.2496 0.0029 3.7305 13 6 8.9473 -1.2467 3.2854 14 6 8.9339 1.2330 3.2800 15 1 9.5502 1.6269 2.4853 16 6 8.9130 1.8562 4.5097 17 7 9.6955 2.8885 4.7371 18 14 7.7733 1.2344 5.8526 19 1 6.4293 1.8427 5.6823 20 1 7.6626 -0.2438 5.7629 21 1 8.3219 1.6099 7.1806 22 6 3.5805 -1.1970 -0.0054 23 6 2.1980 -1.1969 -0.0005 24 6 1.4445 -2.5021 -0.0017 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1326 -0.0010 30 1 6.1416 0.8897 -0.5162 31 1 6.1416 -0.8903 -0.5155 32 1 8.7947 -1.0272 0.2740 33 1 8.1173 0.5137 -0.3049 34 1 9.4712 0.5149 0.8508 35 1 8.3726 -2.1342 3.0207 36 1 9.8457 -1.1987 2.6699 37 1 9.2297 -1.2969 4.3370 38 1 9.6805 3.3272 5.6021 39 1 4.1206 -2.1323 -0.0100 40 1 1.2632 -2.8160 -1.0297 41 1 2.0334 -3.2621 0.5119 42 1 0.4919 -2.3720 0.5119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = -24.001645 kcal Electronic energy + Delta-G solvation = -21269.755024 eV Core-core repulsion = 18214.240466 eV Total energy + Delta-G solvation = -3055.514558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.85677 -38.74850 -35.46018 -34.01875 -32.68018 -32.15009 -30.71570 -29.08757 -27.15550 -26.15707 -25.33340 -25.02615 -22.03097 -21.30807 -19.83105 -18.19390 -17.23106 -16.19745 -15.93583 -15.76087 -15.26803 -14.73896 -14.49972 -14.27008 -13.91918 -13.06971 -12.98774 -12.88308 -12.80311 -12.67032 -12.50913 -12.33184 -12.27375 -11.95525 -11.81582 -11.57463 -11.54294 -11.27121 -11.04843 -10.83390 -10.73633 -10.69673 -10.40495 -9.78141 -9.28729 -9.02298 -8.61453 -8.56669 -8.23593 -7.63869 -6.16587 -4.18688 1.47689 1.56648 3.31909 3.36270 3.39629 3.47020 3.71802 4.08557 4.39491 4.79978 4.83326 4.97500 5.09023 5.14394 5.19065 5.32484 5.36579 5.44307 5.50724 5.59026 5.66094 5.68512 5.76557 5.80134 5.83585 5.88350 5.97924 6.25435 6.27932 6.30244 6.36303 6.41038 6.57877 6.60391 6.73940 6.80484 6.94577 7.08874 7.19077 7.50504 7.65876 8.16695 8.51983 8.84404 8.99975 9.46405 10.95301 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022609 B = 0.004551 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.120805 B = 6150.365464 C = 6497.617522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.116 4.116 4 C -0.106 4.106 5 C -0.056 4.056 6 C -0.103 4.103 7 C 0.506 3.494 8 O -0.548 6.548 9 N -0.591 5.591 10 C 0.082 3.918 11 C 0.223 3.777 12 H 0.063 0.937 13 C -0.146 4.146 14 C -0.525 4.525 15 H 0.078 0.922 16 C 0.080 3.920 17 N -0.893 5.893 18 Si 0.875 3.125 19 H -0.271 1.271 20 H -0.264 1.264 21 H -0.288 1.288 22 C -0.103 4.103 23 C -0.090 4.090 24 C -0.114 4.114 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.266 0.734 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.790 -8.026 -12.853 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.056 4.056 6 C -0.143 4.143 7 C 0.292 3.708 8 O -0.427 6.427 9 N -0.323 5.323 10 C -0.062 4.062 11 C 0.122 3.878 12 H 0.081 0.919 13 C -0.205 4.205 14 C -0.563 4.563 15 H 0.096 0.904 16 C -0.124 4.124 17 N -0.529 5.529 18 Si 0.702 3.298 19 H -0.197 1.197 20 H -0.189 1.189 21 H -0.214 1.214 22 C -0.121 4.121 23 C -0.090 4.090 24 C -0.171 4.171 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.135 0.865 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.113 -7.887 -12.204 19.573 hybrid contribution -0.241 -0.056 0.754 0.794 sum -13.354 -7.943 -11.450 19.301 Atomic orbital electron populations 1.20812 0.91683 1.02628 1.01882 1.19670 0.95652 0.92767 1.01514 1.20913 0.94063 0.97240 1.01190 1.20967 0.94151 0.97567 0.99727 1.19337 0.94037 0.93374 0.98877 1.20747 0.92642 1.04478 0.96435 1.20330 0.82741 0.77307 0.90391 1.90660 1.55071 1.50787 1.46171 1.48313 1.04515 1.70813 1.08620 1.21638 0.95188 1.00282 0.89081 1.19278 0.94692 0.94586 0.79248 0.91885 1.22213 0.99864 0.97151 1.01254 1.21130 1.26048 1.09831 0.99292 0.90389 1.24950 0.94945 0.94203 0.98314 1.69890 1.38003 1.21205 1.23850 0.86896 0.81756 0.80205 0.80980 1.19650 1.18851 1.21386 1.20799 0.93371 0.97387 1.00568 1.19638 0.93555 0.94723 1.01062 1.20822 1.00036 0.94297 1.01903 0.91534 0.91394 0.91844 0.86338 0.86215 0.88351 0.88678 0.93889 0.92467 0.90011 0.95575 0.93170 0.92704 0.92405 0.86463 0.91484 0.91739 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.60 36.00 0.35 -0.74 16 2 C -0.10 -1.24 5.88 -104.63 -0.62 -1.85 16 3 C -0.12 -1.58 9.70 -39.58 -0.38 -1.97 16 4 C -0.11 -1.61 9.70 -39.59 -0.38 -1.99 16 5 C -0.06 -0.87 4.37 -104.62 -0.46 -1.33 16 6 C -0.10 -1.55 4.38 -29.04 -0.13 -1.67 16 7 C 0.51 10.37 7.67 -10.99 -0.08 10.29 16 8 O -0.55 -13.61 15.36 5.56 0.09 -13.53 16 9 N -0.59 -12.31 2.75 -175.26 -0.48 -12.79 16 10 C 0.08 1.32 9.40 59.85 0.56 1.88 16 11 C 0.22 5.43 2.27 -69.08 -0.16 5.27 16 12 H 0.06 1.70 4.11 -51.93 -0.21 1.49 16 13 C -0.15 -3.12 9.09 37.16 0.34 -2.78 16 14 C -0.52 -14.49 8.72 -34.44 -0.30 -14.79 16 15 H 0.08 2.26 6.82 -52.49 -0.36 1.90 16 16 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 17 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 18 Si 0.87 22.57 26.91 -169.99 -4.57 18.00 16 19 H -0.27 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.26 -6.59 6.73 56.52 0.38 -6.21 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C -0.10 -1.50 9.36 -39.58 -0.37 -1.87 16 23 C -0.09 -1.19 5.88 -104.62 -0.62 -1.80 16 24 C -0.11 -1.14 9.60 36.01 0.35 -0.79 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.59 5.95 -51.93 -0.31 0.28 16 27 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 30 H 0.10 1.29 7.34 -51.93 -0.38 0.91 16 31 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 34 H 0.08 1.44 6.56 -51.93 -0.34 1.10 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.99 7.86 -51.93 -0.41 0.58 16 37 H 0.05 1.19 7.97 -51.93 -0.41 0.77 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 42 H 0.07 0.61 5.95 -51.93 -0.31 0.30 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -33.72 339.32 -7.53 -41.24 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.44 Total: 0.09 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.00 Total: -11.94 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.29 Total: -38.97 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.57 Total: 18.00 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.72 -7.53 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.240 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds