Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38262 * 120.00269 * 2 1 4 4 C 1.38208 * 120.00141 * 180.02562 * 3 2 1 5 5 C 1.38254 * 120.00174 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00312 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47113 * 90.00227 * 6 5 4 8 8 O 1.21279 * 120.00235 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99900 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99912 * 359.97438 * 9 7 6 11 11 C 1.46495 * 120.00002 * 179.97438 * 9 7 6 12 12 H 1.09002 * 109.47308 * 359.97438 * 11 9 7 13 13 C 1.53001 * 109.47398 * 119.99746 * 11 9 7 14 14 C 1.50702 * 109.47171 * 239.99670 * 11 9 7 15 15 H 1.08001 * 120.00089 * 325.05166 * 14 11 9 16 16 C 1.37880 * 119.99796 * 145.04858 * 14 11 9 17 17 N 1.31514 * 119.99543 * 176.46253 * 16 14 11 18 18 Si 1.86794 * 120.00028 * 356.46680 * 16 14 11 19 19 H 1.48499 * 109.47255 * 274.92138 * 18 16 14 20 20 H 1.48497 * 109.47373 * 34.92801 * 18 16 14 21 21 H 1.48507 * 109.46963 * 154.92420 * 18 16 14 22 22 C 1.38223 * 119.99727 * 0.25801 * 5 4 3 23 23 C 1.38208 * 119.99809 * 180.02562 * 2 1 3 24 24 C 1.50705 * 120.00296 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47174 * 90.00261 * 1 2 3 26 26 H 1.08996 * 109.47661 * 210.00266 * 1 2 3 27 27 H 1.08999 * 109.47451 * 330.00526 * 1 2 3 28 28 H 1.08000 * 119.99612 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00146 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.46634 * 329.99940 * 6 5 4 31 31 H 1.09002 * 109.47344 * 210.00352 * 6 5 4 32 32 H 1.09003 * 109.47307 * 270.00158 * 10 9 7 33 33 H 1.09006 * 109.47299 * 30.00251 * 10 9 7 34 34 H 1.09005 * 109.47170 * 150.00291 * 10 9 7 35 35 H 1.09001 * 109.47150 * 305.54548 * 13 11 9 36 36 H 1.09004 * 109.47201 * 65.54154 * 13 11 9 37 37 H 1.08997 * 109.47748 * 185.54369 * 13 11 9 38 38 H 0.97005 * 119.99553 * 179.97438 * 17 16 14 39 39 H 1.08005 * 119.99836 * 179.72068 * 22 5 4 40 40 H 1.09002 * 109.46804 * 89.99513 * 24 23 2 41 41 H 1.09006 * 109.47162 * 209.99911 * 24 23 2 42 42 H 1.08999 * 109.46570 * 330.00029 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 -0.0001 -0.0017 7 6 6.2821 0.0005 1.4187 8 8 5.4947 0.0014 2.3411 9 7 7.6074 0.0011 1.6639 10 6 8.5585 0.0006 0.5497 11 6 8.0968 0.0022 3.0447 12 1 7.2496 0.0029 3.7305 13 6 8.9473 -1.2467 3.2854 14 6 8.9339 1.2330 3.2800 15 1 9.5502 1.6269 2.4853 16 6 8.9130 1.8562 4.5097 17 7 9.6955 2.8885 4.7371 18 14 7.7733 1.2344 5.8526 19 1 6.4293 1.8427 5.6823 20 1 7.6626 -0.2438 5.7629 21 1 8.3219 1.6099 7.1806 22 6 3.5805 -1.1970 -0.0054 23 6 2.1980 -1.1969 -0.0005 24 6 1.4445 -2.5021 -0.0017 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1326 -0.0010 30 1 6.1416 0.8897 -0.5162 31 1 6.1416 -0.8903 -0.5155 32 1 8.7947 -1.0272 0.2740 33 1 8.1173 0.5137 -0.3049 34 1 9.4712 0.5149 0.8508 35 1 8.3726 -2.1342 3.0207 36 1 9.8457 -1.1987 2.6699 37 1 9.2297 -1.2969 4.3370 38 1 9.6805 3.3272 5.6021 39 1 4.1206 -2.1323 -0.0100 40 1 1.2632 -2.8160 -1.0297 41 1 2.0334 -3.2621 0.5119 42 1 0.4919 -2.3720 0.5119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = -43.789655 kcal Electronic energy + Delta-G solvation = -21270.613097 eV Core-core repulsion = 18214.240466 eV Total energy + Delta-G solvation = -3056.372631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13713 -40.08110 -37.17666 -35.15721 -34.65959 -33.14239 -32.40998 -30.25254 -28.07287 -27.58378 -27.28174 -26.17055 -23.12691 -22.83255 -21.05099 -19.76304 -19.24543 -17.84754 -17.21889 -17.00821 -16.64469 -16.15262 -15.82300 -15.60009 -15.07964 -14.74430 -14.32350 -14.25649 -14.12112 -13.94955 -13.66290 -13.56559 -13.53521 -13.20906 -13.12851 -12.92246 -12.79327 -12.67009 -12.61090 -12.47146 -12.27262 -11.85297 -11.79827 -11.68880 -11.28395 -10.82587 -10.67042 -9.60467 -9.31904 -9.27606 -8.39247 -6.42346 0.42646 0.52354 1.23673 1.30281 1.38444 1.80951 2.24775 2.33053 2.86189 3.05619 3.72325 3.88624 3.95391 4.04392 4.14532 4.26057 4.42475 4.43027 4.50106 4.58180 4.63068 4.68705 4.73178 4.74497 4.75308 4.85319 4.86829 4.90210 5.02728 5.05041 5.05867 5.15279 5.29326 5.33391 5.40876 5.53424 5.56250 5.71371 5.77595 5.83782 6.14822 6.19858 6.63225 6.79311 7.23156 7.42709 8.76094 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022609 B = 0.004551 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.120805 B = 6150.365464 C = 6497.617522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C -0.128 4.128 4 C -0.130 4.130 5 C -0.079 4.079 6 C -0.089 4.089 7 C 0.498 3.502 8 O -0.600 6.600 9 N -0.600 5.600 10 C 0.077 3.923 11 C 0.221 3.779 12 H 0.035 0.965 13 C -0.138 4.138 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.030 3.970 17 N -0.934 5.934 18 Si 0.924 3.076 19 H -0.289 1.289 20 H -0.252 1.252 21 H -0.275 1.275 22 C -0.118 4.118 23 C -0.100 4.100 24 C -0.112 4.112 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.135 0.865 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.268 0.732 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.144 -9.886 -14.395 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.146 4.146 4 C -0.148 4.148 5 C -0.079 4.079 6 C -0.128 4.128 7 C 0.287 3.713 8 O -0.482 6.482 9 N -0.330 5.330 10 C -0.065 4.065 11 C 0.118 3.882 12 H 0.053 0.947 13 C -0.196 4.196 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.169 4.169 17 N -0.573 5.573 18 Si 0.750 3.250 19 H -0.215 1.215 20 H -0.176 1.176 21 H -0.201 1.201 22 C -0.136 4.136 23 C -0.100 4.100 24 C -0.168 4.168 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.145 0.855 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.444 -9.768 -13.782 22.226 hybrid contribution 0.141 0.529 1.131 1.256 sum -14.303 -9.239 -12.651 21.213 Atomic orbital electron populations 1.20872 0.89253 1.03454 1.03224 1.20117 0.97558 0.92377 1.00277 1.21215 0.93806 0.98566 1.01017 1.21158 0.95138 0.97638 1.00856 1.19499 0.94364 0.93920 1.00151 1.20719 0.92518 1.06903 0.92667 1.21265 0.81997 0.75784 0.92249 1.90627 1.56258 1.52979 1.48294 1.48291 1.05706 1.70712 1.08316 1.21892 0.93565 1.02607 0.88400 1.19065 0.93482 0.94437 0.81180 0.94660 1.22060 1.00083 0.96319 1.01165 1.21393 1.25348 1.10625 0.98320 0.92548 1.25585 0.96252 0.94670 1.00441 1.69981 1.39911 1.22828 1.24602 0.86113 0.79136 0.80302 0.79487 1.21513 1.17594 1.20058 1.21061 0.94291 0.97475 1.00801 1.20081 0.93511 0.96319 1.00091 1.20877 1.00103 0.92588 1.03264 0.89799 0.90308 0.91316 0.84726 0.86468 0.86461 0.85342 0.90605 0.89215 0.92021 0.93444 0.91763 0.93447 0.92274 0.85482 0.89643 0.91684 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.60 71.23 0.68 -1.16 16 2 C -0.10 -2.49 5.88 -19.87 -0.12 -2.61 16 3 C -0.13 -3.39 9.70 22.27 0.22 -3.18 16 4 C -0.13 -3.89 9.70 22.27 0.22 -3.68 16 5 C -0.08 -2.37 4.37 -19.86 -0.09 -2.46 16 6 C -0.09 -2.48 4.38 29.10 0.13 -2.35 16 7 C 0.50 19.97 7.67 87.66 0.67 20.65 16 8 O -0.60 -30.03 15.36 -3.03 -0.05 -30.08 16 9 N -0.60 -24.24 2.75 -826.79 -2.28 -26.52 16 10 C 0.08 2.31 9.40 127.77 1.20 3.51 16 11 C 0.22 10.69 2.27 44.25 0.10 10.79 16 12 H 0.04 1.92 4.11 -2.39 -0.01 1.91 16 13 C -0.14 -5.65 9.09 71.98 0.65 -5.00 16 14 C -0.52 -29.01 8.72 25.60 0.22 -28.79 16 15 H 0.06 3.34 6.82 -2.91 -0.02 3.32 16 16 C 0.03 1.76 5.47 84.66 0.46 2.23 16 17 N -0.93 -57.65 13.96 21.45 0.30 -57.35 16 18 Si 0.92 47.39 26.91 68.60 1.85 49.24 16 19 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 20 H -0.25 -12.30 6.73 99.48 0.67 -11.63 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 C -0.12 -3.27 9.36 22.27 0.21 -3.06 16 23 C -0.10 -2.47 5.88 -19.87 -0.12 -2.58 16 24 C -0.11 -1.94 9.60 71.24 0.68 -1.26 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.13 5.95 -2.39 -0.01 1.11 16 27 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 28 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.12 2.80 7.34 -2.39 -0.02 2.78 16 31 H 0.13 2.69 8.05 -2.39 -0.02 2.67 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 2.07 6.44 -2.38 -0.02 2.05 16 34 H 0.06 2.10 6.56 -2.38 -0.02 2.08 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 2.42 7.86 -2.38 -0.02 2.40 16 37 H 0.05 1.98 7.97 -2.39 -0.02 1.96 16 38 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 39 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.12 8.09 -2.38 -0.02 1.10 16 42 H 0.08 1.19 5.95 -2.39 -0.01 1.17 16 Total: -1.00 -75.15 339.32 5.92 -69.23 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.96 Total: 14.43 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 5.13 Total: -18.95 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -1.98 Total: -83.87 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.05 Total: -30.08 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.85 Total: 49.24 kcal Total: -75.15 5.92 -69.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.439 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds