Wall clock time and date at job start Mon Mar 30 2020 01:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.50703 * 120.00325 * 180.27920 * 5 4 3 7 7 C 1.50703 * 109.46668 * 89.99926 * 6 5 4 8 8 O 1.21279 * 120.00196 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99628 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99919 * 0.02562 * 9 7 6 11 11 C 1.46499 * 119.99666 * 180.02562 * 9 7 6 12 12 H 1.09001 * 109.47593 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.47028 * 240.00287 * 11 9 7 14 14 C 1.50700 * 109.46958 * 120.00613 * 11 9 7 15 15 H 1.08002 * 119.99954 * 359.97438 * 14 11 9 16 16 C 1.37881 * 119.99767 * 180.02562 * 14 11 9 17 17 N 1.31506 * 120.00129 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99687 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47318 * 59.99700 * 18 16 14 20 20 H 1.48498 * 109.47003 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47162 * 299.99200 * 18 16 14 22 22 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 23 23 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 24 24 C 1.50706 * 120.00275 * 0.02562 * 23 2 1 25 25 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 26 26 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 27 27 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 28 28 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 30 30 H 1.08988 * 109.47584 * 210.00451 * 6 5 4 31 31 H 1.09000 * 109.47013 * 330.00967 * 6 5 4 32 32 H 1.09006 * 109.47074 * 90.00028 * 10 9 7 33 33 H 1.08998 * 109.46712 * 209.99629 * 10 9 7 34 34 H 1.09001 * 109.47159 * 329.99814 * 10 9 7 35 35 H 1.08999 * 109.47403 * 299.99991 * 13 11 9 36 36 H 1.08999 * 109.46982 * 60.00079 * 13 11 9 37 37 H 1.09002 * 109.47040 * 180.02562 * 13 11 9 38 38 H 0.97003 * 120.00297 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.00449 * 180.02562 * 22 5 4 40 40 H 1.09004 * 109.46442 * 270.02096 * 24 23 2 41 41 H 1.09000 * 109.46849 * 30.01503 * 24 23 2 42 42 H 1.08993 * 109.47102 * 150.01800 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 6 5.7788 -0.0001 0.0021 7 6 6.2801 0.0064 1.4233 8 8 5.4913 0.0103 2.3445 9 7 7.6050 0.0070 1.6705 10 6 8.5577 0.0018 0.5576 11 6 8.0923 0.0128 3.0520 12 1 7.2441 0.0156 3.7366 13 6 8.9426 1.2628 3.2876 14 6 8.9290 -1.2169 3.2947 15 1 9.0821 -1.9315 2.4994 16 6 9.4982 -1.4302 4.5323 17 7 9.3114 -0.5604 5.5007 18 14 10.5348 -2.9549 4.8332 19 1 11.6907 -2.9596 3.9010 20 1 11.0288 -2.9490 6.2336 21 1 9.7092 -4.1678 4.6043 22 6 3.5807 -1.1970 0.0065 23 6 2.1981 -1.1970 0.0060 24 6 1.4446 -2.5021 0.0119 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8874 -0.5183 27 1 -0.3634 -0.8925 -0.5094 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 -0.0088 30 1 6.1424 -0.8923 -0.5074 31 1 6.1425 0.8876 -0.5155 32 1 8.7944 1.0282 0.2771 33 1 9.4699 -0.5110 0.8627 34 1 8.1178 -0.5156 -0.2949 35 1 9.7909 1.2596 2.6032 36 1 8.3374 2.1522 3.1121 37 1 9.3055 1.2668 4.3154 38 1 9.7122 -0.7102 6.3713 39 1 4.1206 -2.1323 0.0116 40 1 1.2623 -2.8116 1.0411 41 1 0.4925 -2.3743 -0.5031 42 1 2.0340 -3.2642 -0.4977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:21 Heat of formation + Delta-G solvation = -24.503554 kcal Electronic energy + Delta-G solvation = -21141.429803 eV Core-core repulsion = 18085.893480 eV Total energy + Delta-G solvation = -3055.536322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.79906 -38.64279 -35.34468 -33.96726 -32.82084 -32.11336 -30.14727 -28.72805 -27.10411 -26.04635 -25.24603 -25.00173 -21.99777 -21.33733 -19.84974 -18.18379 -16.57823 -16.23636 -15.82324 -15.70033 -15.15167 -14.63649 -14.50313 -14.23125 -14.03755 -13.03970 -12.93023 -12.80350 -12.77944 -12.64253 -12.40439 -12.31493 -11.92845 -11.65991 -11.57350 -11.48914 -11.38505 -11.02385 -10.84848 -10.80815 -10.72087 -10.61457 -10.23837 -10.14741 -9.17990 -8.93809 -8.53202 -8.40953 -8.19316 -7.54143 -6.05500 -4.13637 1.50954 1.59935 3.28322 3.33568 3.34674 3.46247 3.78262 4.17496 4.42317 4.83793 4.87614 4.99631 5.11506 5.17065 5.25034 5.34721 5.40768 5.48673 5.56543 5.66047 5.68901 5.70857 5.81444 5.83821 5.86155 5.92559 6.05939 6.29334 6.32603 6.38819 6.60581 6.76803 6.78054 6.83625 6.86228 7.09437 7.21412 7.46809 7.57017 7.73977 8.04482 8.22726 8.57719 8.85669 9.12275 9.52845 10.99747 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.004030 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.658436 B = 6946.693799 C = 7335.933315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.108 4.108 5 C -0.055 4.055 6 C -0.104 4.104 7 C 0.504 3.496 8 O -0.544 6.544 9 N -0.595 5.595 10 C 0.083 3.917 11 C 0.258 3.742 12 H 0.062 0.938 13 C -0.145 4.145 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.102 4.102 23 C -0.088 4.088 24 C -0.115 4.115 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.010 0.990 37 H 0.092 0.908 38 H 0.264 0.736 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.105 1.213 -14.140 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.135 4.135 4 C -0.126 4.126 5 C -0.055 4.055 6 C -0.144 4.144 7 C 0.291 3.709 8 O -0.423 6.423 9 N -0.327 5.327 10 C -0.061 4.061 11 C 0.158 3.842 12 H 0.080 0.920 13 C -0.204 4.204 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.120 4.120 23 C -0.088 4.088 24 C -0.171 4.171 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.029 0.971 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.137 0.863 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.443 1.248 -13.429 17.687 hybrid contribution 0.895 -0.749 0.229 1.189 sum -10.549 0.499 -13.200 16.905 Atomic orbital electron populations 1.20816 0.91696 1.02341 1.02149 1.19665 0.95640 0.92768 1.01592 1.20885 0.94039 0.97183 1.01398 1.20915 0.94116 0.97385 1.00209 1.19337 0.94057 0.93363 0.98751 1.20758 0.92641 1.04304 0.96698 1.20259 0.82844 0.77605 0.90208 1.90670 1.54906 1.50486 1.46191 1.48244 1.04405 1.70811 1.09260 1.21601 0.95067 1.00349 0.89066 1.18911 0.94838 0.93953 0.76517 0.91982 1.22076 0.98429 0.95827 1.04067 1.21292 1.31476 1.06332 0.97410 0.92336 1.24894 0.96379 0.96680 0.95818 1.69870 1.44440 1.35216 1.03054 0.86561 0.80377 0.83223 0.77243 1.20240 1.21165 1.20259 1.20834 0.93387 0.97550 1.00200 1.19652 0.93562 0.94751 1.00848 1.20832 0.99759 0.94197 1.02342 0.91384 0.91960 0.91437 0.86413 0.86423 0.88626 0.88741 0.93955 0.90142 0.92824 0.95204 0.97091 0.88904 0.92644 0.86341 0.91208 0.91464 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.60 36.01 0.35 -0.75 16 2 C -0.10 -1.26 5.88 -104.62 -0.62 -1.87 16 3 C -0.12 -1.57 9.70 -39.58 -0.38 -1.96 16 4 C -0.11 -1.60 9.70 -39.58 -0.38 -1.99 16 5 C -0.05 -0.86 4.37 -104.62 -0.46 -1.32 16 6 C -0.10 -1.60 4.38 -29.03 -0.13 -1.72 16 7 C 0.50 10.63 7.67 -10.98 -0.08 10.55 16 8 O -0.54 -13.91 15.36 5.56 0.09 -13.82 16 9 N -0.60 -12.84 2.75 -175.26 -0.48 -13.33 16 10 C 0.08 1.39 9.24 59.85 0.55 1.94 16 11 C 0.26 6.71 2.64 -69.08 -0.18 6.52 16 12 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 13 C -0.15 -3.54 8.97 37.16 0.33 -3.21 16 14 C -0.53 -14.36 7.99 -34.44 -0.28 -14.64 16 15 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 16 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 18 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.10 -1.55 9.36 -39.58 -0.37 -1.92 16 23 C -0.09 -1.21 5.88 -104.62 -0.62 -1.82 16 24 C -0.11 -1.22 9.60 36.01 0.35 -0.88 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.07 0.56 5.95 -51.93 -0.31 0.25 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.10 1.27 7.34 -51.94 -0.38 0.89 16 31 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 34 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 35 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 36 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.59 5.95 -51.93 -0.31 0.28 16 42 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -32.45 340.53 -8.18 -40.63 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.51 Total: 1.41 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -2.01 Total: -11.37 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.15 Total: -38.11 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.45 -8.18 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.122 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds