Wall clock time and date at job start Mon Mar 30 2020 01:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.50703 * 120.00325 * 180.27920 * 5 4 3 7 7 C 1.50703 * 109.46668 * 89.99926 * 6 5 4 8 8 O 1.21279 * 120.00196 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99628 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99919 * 0.02562 * 9 7 6 11 11 C 1.46499 * 119.99666 * 180.02562 * 9 7 6 12 12 H 1.09001 * 109.47593 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.47028 * 240.00287 * 11 9 7 14 14 C 1.50700 * 109.46958 * 120.00613 * 11 9 7 15 15 H 1.08002 * 119.99954 * 359.97438 * 14 11 9 16 16 C 1.37881 * 119.99767 * 180.02562 * 14 11 9 17 17 N 1.31506 * 120.00129 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99687 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47318 * 59.99700 * 18 16 14 20 20 H 1.48498 * 109.47003 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47162 * 299.99200 * 18 16 14 22 22 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 23 23 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 24 24 C 1.50706 * 120.00275 * 0.02562 * 23 2 1 25 25 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 26 26 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 27 27 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 28 28 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 30 30 H 1.08988 * 109.47584 * 210.00451 * 6 5 4 31 31 H 1.09000 * 109.47013 * 330.00967 * 6 5 4 32 32 H 1.09006 * 109.47074 * 90.00028 * 10 9 7 33 33 H 1.08998 * 109.46712 * 209.99629 * 10 9 7 34 34 H 1.09001 * 109.47159 * 329.99814 * 10 9 7 35 35 H 1.08999 * 109.47403 * 299.99991 * 13 11 9 36 36 H 1.08999 * 109.46982 * 60.00079 * 13 11 9 37 37 H 1.09002 * 109.47040 * 180.02562 * 13 11 9 38 38 H 0.97003 * 120.00297 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.00449 * 180.02562 * 22 5 4 40 40 H 1.09004 * 109.46442 * 270.02096 * 24 23 2 41 41 H 1.09000 * 109.46849 * 30.01503 * 24 23 2 42 42 H 1.08993 * 109.47102 * 150.01800 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 6 5.7788 -0.0001 0.0021 7 6 6.2801 0.0064 1.4233 8 8 5.4913 0.0103 2.3445 9 7 7.6050 0.0070 1.6705 10 6 8.5577 0.0018 0.5576 11 6 8.0923 0.0128 3.0520 12 1 7.2441 0.0156 3.7366 13 6 8.9426 1.2628 3.2876 14 6 8.9290 -1.2169 3.2947 15 1 9.0821 -1.9315 2.4994 16 6 9.4982 -1.4302 4.5323 17 7 9.3114 -0.5604 5.5007 18 14 10.5348 -2.9549 4.8332 19 1 11.6907 -2.9596 3.9010 20 1 11.0288 -2.9490 6.2336 21 1 9.7092 -4.1678 4.6043 22 6 3.5807 -1.1970 0.0065 23 6 2.1981 -1.1970 0.0060 24 6 1.4446 -2.5021 0.0119 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8874 -0.5183 27 1 -0.3634 -0.8925 -0.5094 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 -0.0088 30 1 6.1424 -0.8923 -0.5074 31 1 6.1425 0.8876 -0.5155 32 1 8.7944 1.0282 0.2771 33 1 9.4699 -0.5110 0.8627 34 1 8.1178 -0.5156 -0.2949 35 1 9.7909 1.2596 2.6032 36 1 8.3374 2.1522 3.1121 37 1 9.3055 1.2668 4.3154 38 1 9.7122 -0.7102 6.3713 39 1 4.1206 -2.1323 0.0116 40 1 1.2623 -2.8116 1.0411 41 1 0.4925 -2.3743 -0.5031 42 1 2.0340 -3.2642 -0.4977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:20 Heat of formation + Delta-G solvation = -42.559874 kcal Electronic energy + Delta-G solvation = -21142.212784 eV Core-core repulsion = 18085.893480 eV Total energy + Delta-G solvation = -3056.319303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09755 -40.04020 -37.13984 -35.15352 -34.70903 -33.11583 -31.79044 -30.08838 -28.07854 -27.51343 -27.30764 -26.14719 -23.18552 -22.89897 -21.08924 -19.78515 -18.51922 -17.87543 -17.14427 -16.95102 -16.69064 -16.03385 -15.97336 -15.53966 -15.09522 -14.67305 -14.28075 -14.04982 -13.97970 -13.72204 -13.58234 -13.53980 -13.42823 -13.03153 -12.94299 -12.77539 -12.72036 -12.63787 -12.61613 -12.44671 -12.19225 -12.12051 -11.78938 -11.68516 -11.20350 -10.68270 -10.47703 -9.59953 -9.30090 -9.26715 -8.14673 -6.31700 0.43512 0.53164 1.40732 1.43362 1.50761 1.85186 2.32777 2.49843 2.91112 3.12975 3.73356 3.89384 3.98818 4.05442 4.15247 4.26566 4.40240 4.51437 4.56222 4.62734 4.72805 4.74707 4.77702 4.78674 4.86886 4.89061 4.90870 5.04696 5.05556 5.06202 5.08993 5.29691 5.40179 5.47696 5.55960 5.61950 5.67612 5.71992 5.78532 6.05054 6.16644 6.20118 6.76626 6.87019 7.33232 7.52189 8.89522 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.004030 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.658436 B = 6946.693799 C = 7335.933315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.079 4.079 6 C -0.088 4.088 7 C 0.495 3.505 8 O -0.601 6.601 9 N -0.603 5.603 10 C 0.078 3.922 11 C 0.261 3.739 12 H 0.004 0.996 13 C -0.131 4.131 14 C -0.540 4.540 15 H 0.062 0.938 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.277 1.277 22 C -0.124 4.124 23 C -0.101 4.101 24 C -0.113 4.113 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.018 0.982 37 H 0.066 0.934 38 H 0.264 0.736 39 H 0.118 0.882 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.321 0.677 -16.401 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.104 4.104 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.079 4.079 6 C -0.127 4.127 7 C 0.284 3.716 8 O -0.483 6.483 9 N -0.334 5.334 10 C -0.064 4.064 11 C 0.159 3.841 12 H 0.022 0.978 13 C -0.189 4.189 14 C -0.578 4.578 15 H 0.080 0.920 16 C -0.186 4.186 17 N -0.558 5.558 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.209 1.209 21 H -0.203 1.203 22 C -0.142 4.142 23 C -0.101 4.101 24 C -0.169 4.169 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.158 0.842 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.639 0.717 -15.743 19.591 hybrid contribution 0.883 -0.550 0.935 1.399 sum -10.755 0.167 -14.808 18.303 Atomic orbital electron populations 1.20875 0.89186 1.03967 1.02760 1.20131 0.97602 0.92366 1.00258 1.21250 0.93849 0.98520 1.00794 1.21166 0.95059 0.97512 1.00606 1.19503 0.94349 0.93979 1.00112 1.20715 0.92588 1.06833 0.92562 1.21286 0.82086 0.75988 0.92194 1.90635 1.56231 1.52879 1.48558 1.48264 1.05709 1.70652 1.08740 1.21880 0.93748 1.02355 0.88425 1.18493 0.92671 0.94473 0.78457 0.97776 1.21856 0.98758 0.95465 1.02845 1.21572 1.31528 1.06911 0.97787 0.91971 1.25767 0.97599 0.99666 0.95557 1.70024 1.45328 1.37011 1.03404 0.85501 0.78988 0.79105 0.77371 1.18516 1.20943 1.20281 1.21058 0.94468 0.97556 1.01084 1.20065 0.93385 0.96449 1.00245 1.20879 1.00592 0.92903 1.02574 0.91106 0.90359 0.89880 0.84206 0.85651 0.86178 0.85695 0.91551 0.91390 0.88906 0.93367 0.96319 0.91541 0.92667 0.86353 0.91474 0.89247 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.60 71.24 0.68 -1.19 16 2 C -0.10 -2.55 5.88 -19.86 -0.12 -2.67 16 3 C -0.13 -3.25 9.70 22.27 0.22 -3.03 16 4 C -0.13 -3.64 9.70 22.27 0.22 -3.42 16 5 C -0.08 -2.45 4.37 -19.86 -0.09 -2.54 16 6 C -0.09 -2.55 4.38 29.10 0.13 -2.42 16 7 C 0.50 21.00 7.67 87.66 0.67 21.67 16 8 O -0.60 -32.04 15.36 -3.03 -0.05 -32.09 16 9 N -0.60 -25.90 2.75 -826.79 -2.28 -28.17 16 10 C 0.08 2.42 9.24 127.77 1.18 3.60 16 11 C 0.26 13.98 2.64 44.25 0.12 14.10 16 12 H 0.00 0.27 6.90 -2.39 -0.02 0.26 16 13 C -0.13 -6.47 8.97 71.98 0.65 -5.82 16 14 C -0.54 -29.82 7.99 25.60 0.20 -29.62 16 15 H 0.06 3.30 7.33 -2.91 -0.02 3.28 16 16 C 0.01 0.75 5.30 84.66 0.45 1.20 16 17 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 18 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 C -0.12 -3.74 9.36 22.27 0.21 -3.53 16 23 C -0.10 -2.69 5.88 -19.86 -0.12 -2.81 16 24 C -0.11 -2.23 9.60 71.24 0.68 -1.55 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 27 H 0.08 1.13 5.95 -2.39 -0.01 1.11 16 28 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 29 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.12 2.87 7.34 -2.39 -0.02 2.85 16 31 H 0.13 2.84 8.05 -2.39 -0.02 2.82 16 32 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.07 2.29 7.02 -2.39 -0.02 2.27 16 34 H 0.09 2.13 6.44 -2.39 -0.02 2.12 16 35 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 38 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.09 1.33 5.95 -2.39 -0.01 1.31 16 42 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 Total: -1.00 -73.94 340.53 6.03 -67.91 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 1.00 Total: 18.67 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 5.08 Total: -18.03 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.03 Total: -81.95 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.05 Total: -32.09 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -73.94 6.03 -67.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.350 kcal (2) G-P(sol) polarization free energy of solvation -73.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds