Wall clock time and date at job start Mon Mar 30 2020 01:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99896 * 2 1 4 4 C 1.38210 * 119.99995 * 179.76655 * 3 2 1 5 5 C 1.38262 * 120.00043 * 0.52743 * 4 3 2 6 6 C 1.50701 * 120.00162 * 179.74259 * 5 4 3 7 7 C 1.52998 * 109.47153 * 264.72438 * 6 5 4 8 8 C 1.50701 * 109.47153 * 180.02562 * 7 6 5 9 9 O 1.21275 * 119.99943 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99964 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99973 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46864 * 325.00310 * 11 10 8 13 13 C 1.53000 * 109.46908 * 85.00105 * 11 10 8 14 14 C 1.50693 * 109.47398 * 205.00064 * 11 10 8 15 15 H 1.08005 * 120.00291 * 354.36544 * 14 11 10 16 16 C 1.37881 * 120.00259 * 174.36876 * 14 11 10 17 17 N 1.31514 * 120.00212 * 156.61898 * 16 14 11 18 18 Si 1.86795 * 119.99775 * 336.88788 * 16 14 11 19 19 H 1.48501 * 109.47165 * 179.72704 * 18 16 14 20 20 H 1.48500 * 109.47318 * 299.72681 * 18 16 14 21 21 H 1.48500 * 109.47076 * 59.72783 * 18 16 14 22 22 C 1.38220 * 119.99771 * 359.47371 * 5 4 3 23 23 C 1.50694 * 120.00048 * 180.27532 * 22 5 4 24 24 C 1.38213 * 120.00054 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47431 * 269.97870 * 1 2 3 26 26 H 1.08997 * 109.47072 * 29.98306 * 1 2 3 27 27 H 1.09007 * 109.47179 * 149.98047 * 1 2 3 28 28 H 1.07996 * 119.99835 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.00332 * 180.27559 * 4 3 2 30 30 H 1.09001 * 109.46569 * 144.72986 * 6 5 4 31 31 H 1.08991 * 109.46922 * 24.72777 * 6 5 4 32 32 H 1.09007 * 109.46749 * 60.00380 * 7 6 5 33 33 H 1.08994 * 109.47375 * 300.00529 * 7 6 5 34 34 H 0.96999 * 120.00353 * 0.02562 * 10 8 7 35 35 H 1.08994 * 109.47507 * 53.10469 * 13 11 10 36 36 H 1.09003 * 109.46967 * 173.10985 * 13 11 10 37 37 H 1.09007 * 109.46955 * 293.10213 * 13 11 10 38 38 H 0.97003 * 119.99433 * 355.20223 * 17 16 14 39 39 H 1.09001 * 109.47258 * 89.99523 * 23 22 5 40 40 H 1.09004 * 109.47319 * 209.99904 * 23 22 5 41 41 H 1.09005 * 109.47237 * 329.99507 * 23 22 5 42 42 H 1.08000 * 119.99943 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0049 5 6 4.2717 0.0001 -0.0013 6 6 5.7787 0.0001 -0.0018 7 6 6.2882 -0.1255 -1.4390 8 6 7.7952 -0.1261 -1.4395 9 8 8.4020 -0.0355 -0.3933 10 7 8.4687 -0.2272 -2.6025 11 6 9.9337 -0.2272 -2.6031 12 1 10.2973 0.4329 -1.8155 13 6 10.4437 -1.6480 -2.3535 14 6 10.4356 0.2593 -3.9380 15 1 9.7378 0.4537 -4.7392 16 6 11.7857 0.4563 -4.1369 17 7 12.2823 0.4262 -5.3543 18 14 12.9104 0.7586 -2.6765 19 1 14.3058 0.9324 -3.1540 20 1 12.4753 1.9857 -1.9622 21 1 12.8444 -0.4019 -1.7523 22 6 3.5806 -1.1970 -0.0013 23 6 4.3341 -2.5020 -0.0017 24 6 2.1981 -1.1970 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3634 -0.8899 -0.5142 28 1 1.6582 2.1326 0.0004 29 1 4.1204 2.1327 0.0094 30 1 6.1422 -0.8419 0.5874 31 1 6.1421 0.9313 0.4325 32 1 5.9246 0.7165 -2.0282 33 1 5.9247 -1.0567 -1.8733 34 1 7.9834 -0.2993 -3.4393 35 1 9.9829 -2.3302 -3.0678 36 1 11.5267 -1.6718 -2.4749 37 1 10.1849 -1.9540 -1.3397 38 1 11.7125 0.1967 -6.1050 39 1 4.5162 -2.8168 1.0259 40 1 3.7449 -3.2616 -0.5155 41 1 5.2864 -2.3716 -0.5159 42 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064345970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:56 Heat of formation + Delta-G solvation = -45.875206 kcal Electronic energy + Delta-G solvation = -20585.364734 eV Core-core repulsion = 17528.901667 eV Total energy + Delta-G solvation = -3056.463067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.97057 -38.91400 -35.26295 -34.61485 -32.55719 -32.42422 -31.32995 -29.56826 -27.36496 -26.89671 -24.85487 -23.59117 -22.15326 -20.75502 -19.98011 -19.49545 -17.75797 -16.54320 -16.20968 -15.57273 -15.23270 -14.86534 -14.76558 -14.23922 -13.76104 -13.38962 -13.28978 -13.16650 -13.08674 -12.86171 -12.50739 -12.48375 -12.21630 -12.14187 -12.06825 -11.62955 -11.41441 -11.34863 -11.17685 -10.89484 -10.75429 -10.48546 -10.10648 -9.83619 -9.20839 -9.13461 -8.84937 -8.46986 -8.29363 -8.14323 -6.59632 -4.20352 1.21727 1.28853 3.28652 3.41153 3.46086 3.56782 3.62157 4.05323 4.44546 4.61291 4.67171 4.82123 4.90222 5.02726 5.11569 5.15906 5.19718 5.27436 5.33411 5.40768 5.48754 5.53868 5.58058 5.63032 5.74291 5.81623 5.90964 6.00356 6.13755 6.28979 6.37781 6.40855 6.46032 6.56910 6.63521 6.69479 6.93625 6.98403 7.31250 7.42953 7.69364 8.24763 8.51440 8.71503 9.01373 9.45674 10.78647 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037027 B = 0.003174 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.026469 B = 8819.475892 C = 8919.817197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.126 4.126 4 C -0.109 4.109 5 C -0.083 4.083 6 C -0.065 4.065 7 C -0.136 4.136 8 C 0.500 3.500 9 O -0.559 6.559 10 N -0.704 5.704 11 C 0.243 3.757 12 H 0.040 0.960 13 C -0.155 4.155 14 C -0.625 4.625 15 H 0.062 0.938 16 C 0.045 3.955 17 N -0.891 5.891 18 Si 1.034 2.966 19 H -0.283 1.283 20 H -0.281 1.281 21 H -0.274 1.274 22 C -0.077 4.077 23 C -0.121 4.121 24 C -0.121 4.121 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.393 0.607 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.029 0.971 38 H 0.270 0.730 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.582 -2.819 9.675 23.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.127 4.127 5 C -0.083 4.083 6 C -0.102 4.102 7 C -0.176 4.176 8 C 0.285 3.715 9 O -0.439 6.439 10 N -0.352 5.352 11 C 0.139 3.861 12 H 0.057 0.943 13 C -0.214 4.214 14 C -0.662 4.662 15 H 0.080 0.920 16 C -0.163 4.163 17 N -0.523 5.523 18 Si 0.861 3.139 19 H -0.209 1.209 20 H -0.207 1.207 21 H -0.200 1.200 22 C -0.077 4.077 23 C -0.178 4.178 24 C -0.139 4.139 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.225 0.775 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.539 -2.410 10.791 22.450 hybrid contribution -1.912 -0.325 -1.000 2.182 sum -21.451 -2.735 9.791 23.738 Atomic orbital electron populations 1.20767 0.91441 1.02596 1.02108 1.19865 0.95862 0.93240 1.00318 1.20978 0.94168 0.97373 1.01853 1.21081 0.94062 0.97697 0.99828 1.19851 0.95779 0.92591 1.00081 1.20321 0.89486 1.04406 0.96013 1.21667 0.93369 1.04053 0.98531 1.20560 0.89509 0.76904 0.84500 1.90638 1.70491 1.51109 1.31615 1.46318 1.09300 1.71947 1.07622 1.18963 0.75568 0.93175 0.98391 0.94264 1.22418 1.01285 0.99352 0.98326 1.22023 0.94873 1.52202 0.97136 0.92005 1.25644 0.96353 0.92804 1.01455 1.70873 1.38392 1.42943 1.00077 0.84172 0.76362 0.77871 0.75462 1.20865 1.20675 1.19976 1.19793 0.93528 0.95023 0.99399 1.20897 1.00457 0.93850 1.02553 1.20871 0.93436 0.97425 1.02167 0.91391 0.91678 0.91717 0.86324 0.85944 0.90078 0.90276 0.89284 0.89377 0.77452 0.93860 0.92329 0.95238 0.91972 0.91068 0.91665 0.90812 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.09 -0.91 5.88 -104.62 -0.62 -1.52 16 3 C -0.13 -1.27 9.70 -39.58 -0.38 -1.65 16 4 C -0.11 -1.21 9.68 -39.58 -0.38 -1.59 16 5 C -0.08 -0.99 5.13 -104.62 -0.54 -1.53 16 6 C -0.06 -0.85 3.94 -27.88 -0.11 -0.96 16 7 C -0.14 -1.87 5.49 -27.88 -0.15 -2.02 16 8 C 0.50 9.46 7.79 -10.98 -0.09 9.37 16 9 O -0.56 -12.54 15.64 5.56 0.09 -12.46 16 10 N -0.70 -14.33 5.07 -54.94 -0.28 -14.61 16 11 C 0.24 5.91 2.16 -69.09 -0.15 5.76 16 12 H 0.04 1.04 6.15 -51.93 -0.32 0.72 16 13 C -0.16 -3.56 9.20 37.16 0.34 -3.22 16 14 C -0.62 -17.03 8.95 -34.44 -0.31 -17.34 16 15 H 0.06 1.76 7.96 -52.48 -0.42 1.34 16 16 C 0.05 1.27 5.19 -17.82 -0.09 1.18 16 17 N -0.89 -26.50 13.70 55.43 0.76 -25.74 16 18 Si 1.03 25.24 26.44 -169.99 -4.50 20.74 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.33 6.14 56.52 0.35 -5.98 16 22 C -0.08 -0.86 5.88 -104.62 -0.62 -1.47 16 23 C -0.12 -1.18 9.22 36.00 0.33 -0.85 16 24 C -0.12 -1.23 9.36 -39.58 -0.37 -1.60 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.08 1.12 6.95 -51.93 -0.36 0.75 16 31 H 0.08 1.10 8.01 -51.93 -0.42 0.69 16 32 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 33 H 0.09 1.07 6.91 -51.93 -0.36 0.71 16 34 H 0.39 7.10 8.52 -40.82 -0.35 6.75 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.38 5.47 -51.93 -0.28 1.10 16 37 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 38 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 41 H 0.07 0.77 5.43 -51.93 -0.28 0.49 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -31.56 342.07 -8.18 -39.73 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.63 Total: 5.05 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.77 Total: -17.88 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.48 Total: -40.35 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -4.50 Total: 20.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.56 -8.18 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064345970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.141 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds