Wall clock time and date at job start Mon Mar 30 2020 01:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99896 * 2 1 4 4 C 1.38210 * 119.99995 * 179.76655 * 3 2 1 5 5 C 1.38262 * 120.00043 * 0.52743 * 4 3 2 6 6 C 1.50701 * 120.00162 * 179.74259 * 5 4 3 7 7 C 1.52998 * 109.47153 * 264.72438 * 6 5 4 8 8 C 1.50701 * 109.47153 * 180.02562 * 7 6 5 9 9 O 1.21275 * 119.99943 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99964 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99973 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46864 * 325.00310 * 11 10 8 13 13 C 1.53000 * 109.46908 * 85.00105 * 11 10 8 14 14 C 1.50693 * 109.47398 * 205.00064 * 11 10 8 15 15 H 1.08005 * 120.00291 * 354.36544 * 14 11 10 16 16 C 1.37881 * 120.00259 * 174.36876 * 14 11 10 17 17 N 1.31514 * 120.00212 * 156.61898 * 16 14 11 18 18 Si 1.86795 * 119.99775 * 336.88788 * 16 14 11 19 19 H 1.48501 * 109.47165 * 179.72704 * 18 16 14 20 20 H 1.48500 * 109.47318 * 299.72681 * 18 16 14 21 21 H 1.48500 * 109.47076 * 59.72783 * 18 16 14 22 22 C 1.38220 * 119.99771 * 359.47371 * 5 4 3 23 23 C 1.50694 * 120.00048 * 180.27532 * 22 5 4 24 24 C 1.38213 * 120.00054 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47431 * 269.97870 * 1 2 3 26 26 H 1.08997 * 109.47072 * 29.98306 * 1 2 3 27 27 H 1.09007 * 109.47179 * 149.98047 * 1 2 3 28 28 H 1.07996 * 119.99835 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.00332 * 180.27559 * 4 3 2 30 30 H 1.09001 * 109.46569 * 144.72986 * 6 5 4 31 31 H 1.08991 * 109.46922 * 24.72777 * 6 5 4 32 32 H 1.09007 * 109.46749 * 60.00380 * 7 6 5 33 33 H 1.08994 * 109.47375 * 300.00529 * 7 6 5 34 34 H 0.96999 * 120.00353 * 0.02562 * 10 8 7 35 35 H 1.08994 * 109.47507 * 53.10469 * 13 11 10 36 36 H 1.09003 * 109.46967 * 173.10985 * 13 11 10 37 37 H 1.09007 * 109.46955 * 293.10213 * 13 11 10 38 38 H 0.97003 * 119.99433 * 355.20223 * 17 16 14 39 39 H 1.09001 * 109.47258 * 89.99523 * 23 22 5 40 40 H 1.09004 * 109.47319 * 209.99904 * 23 22 5 41 41 H 1.09005 * 109.47237 * 329.99507 * 23 22 5 42 42 H 1.08000 * 119.99943 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0049 5 6 4.2717 0.0001 -0.0013 6 6 5.7787 0.0001 -0.0018 7 6 6.2882 -0.1255 -1.4390 8 6 7.7952 -0.1261 -1.4395 9 8 8.4020 -0.0355 -0.3933 10 7 8.4687 -0.2272 -2.6025 11 6 9.9337 -0.2272 -2.6031 12 1 10.2973 0.4329 -1.8155 13 6 10.4437 -1.6480 -2.3535 14 6 10.4356 0.2593 -3.9380 15 1 9.7378 0.4537 -4.7392 16 6 11.7857 0.4563 -4.1369 17 7 12.2823 0.4262 -5.3543 18 14 12.9104 0.7586 -2.6765 19 1 14.3058 0.9324 -3.1540 20 1 12.4753 1.9857 -1.9622 21 1 12.8444 -0.4019 -1.7523 22 6 3.5806 -1.1970 -0.0013 23 6 4.3341 -2.5020 -0.0017 24 6 2.1981 -1.1970 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3634 -0.8899 -0.5142 28 1 1.6582 2.1326 0.0004 29 1 4.1204 2.1327 0.0094 30 1 6.1422 -0.8419 0.5874 31 1 6.1421 0.9313 0.4325 32 1 5.9246 0.7165 -2.0282 33 1 5.9247 -1.0567 -1.8733 34 1 7.9834 -0.2993 -3.4393 35 1 9.9829 -2.3302 -3.0678 36 1 11.5267 -1.6718 -2.4749 37 1 10.1849 -1.9540 -1.3397 38 1 11.7125 0.1967 -6.1050 39 1 4.5162 -2.8168 1.0259 40 1 3.7449 -3.2616 -0.5155 41 1 5.2864 -2.3716 -0.5159 42 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064345970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:55 Heat of formation + Delta-G solvation = -64.222225 kcal Electronic energy + Delta-G solvation = -20586.160321 eV Core-core repulsion = 17528.901667 eV Total energy + Delta-G solvation = -3057.258653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98606 -40.28229 -36.92238 -35.71520 -34.47104 -33.36743 -32.41257 -31.18250 -28.10768 -27.82082 -26.88638 -24.68408 -22.99129 -22.39840 -21.20378 -20.80876 -19.74872 -18.00120 -17.19448 -16.93532 -16.51171 -16.06671 -15.69987 -15.54186 -15.04621 -14.69842 -14.60852 -14.50889 -14.09086 -14.03186 -13.94545 -13.62801 -13.35351 -13.26904 -13.21581 -13.09852 -12.81383 -12.44907 -12.23695 -12.11626 -12.02577 -11.75425 -11.73693 -11.66575 -11.23118 -10.77950 -10.46720 -9.89376 -9.62937 -9.28291 -8.82132 -6.43510 0.41945 0.50693 1.46113 1.48873 1.70007 1.77202 2.41742 2.48950 2.83761 2.94067 3.74027 3.87319 4.02510 4.05551 4.07988 4.16852 4.31238 4.45934 4.50521 4.52279 4.61056 4.70660 4.73476 4.78732 4.79288 4.82706 4.86632 4.96611 5.00370 5.05015 5.09426 5.18159 5.32445 5.40944 5.43299 5.58739 5.65634 5.67512 5.72645 5.80121 6.00999 6.17263 6.52268 6.85764 7.26250 7.45136 8.55193 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037027 B = 0.003174 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.026469 B = 8819.475892 C = 8919.817197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.134 4.134 4 C -0.120 4.120 5 C -0.099 4.099 6 C -0.056 4.056 7 C -0.121 4.121 8 C 0.499 3.501 9 O -0.594 6.594 10 N -0.706 5.706 11 C 0.244 3.756 12 H 0.021 0.979 13 C -0.148 4.148 14 C -0.623 4.623 15 H 0.042 0.958 16 C 0.002 3.998 17 N -0.919 5.919 18 Si 1.067 2.933 19 H -0.280 1.280 20 H -0.274 1.274 21 H -0.254 1.254 22 C -0.086 4.086 23 C -0.120 4.120 24 C -0.129 4.129 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.404 0.596 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.261 0.739 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.633 -3.361 10.600 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.152 4.152 4 C -0.138 4.138 5 C -0.099 4.099 6 C -0.094 4.094 7 C -0.161 4.161 8 C 0.287 3.713 9 O -0.476 6.476 10 N -0.355 5.355 11 C 0.139 3.861 12 H 0.038 0.962 13 C -0.207 4.207 14 C -0.660 4.660 15 H 0.060 0.940 16 C -0.200 4.200 17 N -0.553 5.553 18 Si 0.889 3.111 19 H -0.205 1.205 20 H -0.200 1.200 21 H -0.179 1.179 22 C -0.086 4.086 23 C -0.177 4.177 24 C -0.147 4.147 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.154 0.846 29 H 0.144 0.856 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.239 0.761 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.631 -2.960 11.705 24.772 hybrid contribution -1.397 -0.138 -1.298 1.912 sum -23.027 -3.097 10.407 25.459 Atomic orbital electron populations 1.20818 0.89453 1.03555 1.02974 1.20251 0.97435 0.92947 0.98942 1.21246 0.93872 0.98507 1.01559 1.21241 0.94820 0.97688 1.00041 1.19752 0.94746 0.93432 1.02003 1.20181 0.90708 1.03286 0.95218 1.21629 0.89020 1.05863 0.99577 1.21374 0.91475 0.75217 0.83201 1.90619 1.71763 1.52455 1.32778 1.46192 1.07880 1.72486 1.08938 1.18691 0.78052 0.93471 0.95844 0.96169 1.22293 1.00755 0.98466 0.99137 1.22182 0.94583 1.51407 0.97870 0.94007 1.26742 0.98218 0.92373 1.02647 1.70965 1.38544 1.45209 1.00572 0.83730 0.75074 0.78781 0.73469 1.20522 1.20002 1.17866 1.19985 0.94209 0.95112 0.99318 1.20909 1.00095 0.93811 1.02866 1.21147 0.93184 0.98509 1.01842 0.90459 0.90803 0.90749 0.84571 0.85571 0.91000 0.91622 0.87644 0.87152 0.76146 0.92946 0.93128 0.94303 0.92988 0.90760 0.90100 0.91776 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.10 -1.63 5.88 -19.87 -0.12 -1.75 16 3 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 4 C -0.12 -2.52 9.68 22.27 0.22 -2.31 16 5 C -0.10 -2.24 5.13 -19.86 -0.10 -2.35 16 6 C -0.06 -1.44 3.94 29.85 0.12 -1.32 16 7 C -0.12 -3.15 5.49 29.85 0.16 -2.99 16 8 C 0.50 18.44 7.79 87.66 0.68 19.12 16 9 O -0.59 -26.47 15.64 -3.02 -0.05 -26.52 16 10 N -0.71 -28.15 5.07 -446.11 -2.26 -30.41 16 11 C 0.24 11.77 2.16 44.24 0.10 11.86 16 12 H 0.02 1.07 6.15 -2.38 -0.01 1.06 16 13 C -0.15 -6.61 9.20 71.98 0.66 -5.95 16 14 C -0.62 -34.09 8.95 25.60 0.23 -33.86 16 15 H 0.04 2.41 7.96 -2.91 -0.02 2.38 16 16 C 0.00 0.14 5.19 84.66 0.44 0.58 16 17 N -0.92 -55.30 13.70 21.45 0.29 -55.01 16 18 Si 1.07 50.59 26.44 68.60 1.81 52.41 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.25 -11.16 6.14 99.48 0.61 -10.55 16 22 C -0.09 -1.76 5.88 -19.87 -0.12 -1.88 16 23 C -0.12 -2.14 9.22 71.23 0.66 -1.48 16 24 C -0.13 -2.31 9.36 22.27 0.21 -2.10 16 25 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 27 H 0.07 0.69 8.09 -2.38 -0.02 0.67 16 28 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 29 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 30 H 0.07 1.95 6.95 -2.39 -0.02 1.93 16 31 H 0.07 1.83 8.01 -2.39 -0.02 1.81 16 32 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.11 2.42 6.91 -2.39 -0.02 2.41 16 34 H 0.40 14.20 8.52 -92.71 -0.79 13.41 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.05 2.31 5.47 -2.39 -0.01 2.30 16 37 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.26 15.67 8.73 -92.71 -0.81 14.86 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 41 H 0.06 1.25 5.43 -2.38 -0.01 1.23 16 42 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -67.28 342.07 3.95 -63.33 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.08 Total: 23.36 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 4.07 Total: -27.16 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -1.97 Total: -85.42 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.81 Total: 52.41 kcal Total: -67.28 3.95 -63.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064345970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.895 kcal (2) G-P(sol) polarization free energy of solvation -67.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds