Wall clock time and date at job start Mon Mar 30 2020 01:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46834 * 300.00181 * 3 2 1 6 6 H 1.48501 * 109.47170 * 60.00065 * 3 2 1 7 7 C 1.38810 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00056 * 157.62708 * 7 2 1 9 9 N 1.36932 * 120.00075 * 337.62900 * 7 2 1 10 10 C 1.46501 * 119.99892 * 146.16085 * 9 7 2 11 11 C 1.50706 * 109.47257 * 270.00071 * 10 9 7 12 12 C 1.38237 * 119.99661 * 269.73049 * 11 10 9 13 13 C 1.38235 * 119.99565 * 179.81526 * 12 11 10 14 14 C 1.38235 * 120.00039 * 0.38863 * 13 12 11 15 15 C 1.38230 * 120.00041 * 359.85731 * 14 13 12 16 16 C 1.38227 * 120.00036 * 90.00296 * 11 10 9 17 17 C 1.46502 * 120.00311 * 326.16152 * 9 7 2 18 18 C 1.52996 * 109.47115 * 264.43589 * 17 9 7 19 19 H 1.09004 * 109.47881 * 305.01884 * 18 17 9 20 20 C 1.53095 * 109.48017 * 184.99752 * 18 17 9 21 21 C 1.53181 * 109.16404 * 182.40405 * 20 18 17 22 22 C 1.53179 * 109.03236 * 56.97960 * 21 20 18 23 23 C 1.53092 * 109.16397 * 303.01702 * 22 21 20 24 24 O 1.42901 * 109.48218 * 65.05197 * 18 17 9 25 25 H 0.96999 * 120.00374 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47212 * 30.00231 * 10 9 7 27 27 H 1.09003 * 109.47116 * 150.00265 * 10 9 7 28 28 H 1.07997 * 120.00198 * 359.97438 * 12 11 10 29 29 H 1.08003 * 119.99647 * 180.23353 * 13 12 11 30 30 H 1.08001 * 119.99550 * 179.84106 * 14 13 12 31 31 H 1.08001 * 120.00071 * 179.97438 * 15 14 13 32 32 H 1.08000 * 119.99979 * 359.97438 * 16 11 10 33 33 H 1.08995 * 109.47249 * 144.42933 * 17 9 7 34 34 H 1.09002 * 109.46504 * 24.42938 * 17 9 7 35 35 H 1.08997 * 109.52297 * 302.31419 * 20 18 17 36 36 H 1.09004 * 109.52347 * 62.49816 * 20 18 17 37 37 H 1.08993 * 109.54060 * 176.84683 * 21 20 18 38 38 H 1.08997 * 109.54236 * 297.11793 * 21 20 18 39 39 H 1.09001 * 109.51982 * 183.11439 * 22 21 20 40 40 H 1.08998 * 109.57176 * 62.95691 * 22 21 20 41 41 H 1.08996 * 109.48109 * 297.62819 * 23 22 21 42 42 H 1.09002 * 109.47677 * 177.59068 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0293 -1.2372 -0.3566 9 7 1.4029 -2.3436 0.4503 10 6 1.7235 -3.6350 -0.1627 11 6 0.7850 -3.8915 -1.3137 12 6 -0.4072 -4.5572 -1.0981 13 6 -1.2698 -4.7891 -2.1531 14 6 -0.9365 -4.3625 -3.4250 15 6 0.2580 -3.7013 -3.6414 16 6 1.1189 -3.4662 -2.5858 17 6 0.4326 -2.2735 1.5456 18 6 1.1360 -2.5758 2.8702 19 1 1.6444 -3.5375 2.8006 20 6 0.1017 -2.6256 3.9979 21 6 0.8200 -2.8689 5.3287 22 6 1.8613 -1.7661 5.5432 23 6 2.8277 -1.7496 4.3560 24 8 2.0918 -1.5502 3.1472 25 1 -0.4850 0.8400 0.0004 26 1 2.7504 -3.6189 -0.5279 27 1 1.6139 -4.4264 0.5788 28 1 -0.6659 -4.8937 -0.1051 29 1 -2.2030 -5.3058 -1.9840 30 1 -1.6093 -4.5460 -4.2497 31 1 0.5186 -3.3684 -4.6353 32 1 2.0522 -2.9496 -2.7548 33 1 -0.3576 -3.0054 1.3785 34 1 -0.0003 -1.2738 1.5840 35 1 -0.4354 -1.6781 4.0416 36 1 -0.6027 -3.4362 3.8106 37 1 0.0956 -2.8497 6.1428 38 1 1.3163 -3.8390 5.3032 39 1 2.4155 -1.9620 6.4612 40 1 1.3606 -0.8009 5.6189 41 1 3.3583 -2.7004 4.3059 42 1 3.5451 -0.9389 4.4826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064932633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:04 Heat of formation + Delta-G solvation = -10.236795 kcal Electronic energy + Delta-G solvation = -22027.499249 eV Core-core repulsion = 18972.581580 eV Total energy + Delta-G solvation = -3054.917669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.80622 -38.37525 -35.45077 -33.02823 -31.85120 -31.44900 -30.15132 -29.56536 -26.41965 -25.43035 -23.78232 -22.49051 -21.81664 -21.02596 -19.93896 -19.61596 -16.69514 -16.07879 -15.60849 -15.35412 -14.63227 -14.39478 -14.32387 -14.22565 -13.96016 -13.63668 -13.34124 -12.81904 -12.70787 -12.34378 -12.12909 -11.81191 -11.74934 -11.38306 -10.95755 -10.82269 -10.76307 -10.72951 -10.58391 -10.41083 -10.19957 -10.08908 -9.98244 -9.86877 -9.42466 -8.68272 -8.38812 -8.17182 -7.94423 -6.55877 -5.69968 -3.19090 2.13513 2.16160 3.45406 3.53255 3.56265 4.48013 4.58214 4.65531 5.13185 5.13436 5.24610 5.39521 5.50698 5.53744 5.57364 5.68983 5.71150 5.77841 5.88086 5.90850 5.96060 6.07669 6.14494 6.19431 6.25894 6.27786 6.32318 6.38685 6.39000 6.60091 6.70701 6.78460 6.80423 6.81752 6.84879 7.16765 7.21902 7.52889 7.73198 7.78572 7.89517 8.14894 8.59089 9.24623 9.89245 10.42869 11.32196 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.007004 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.297197 B = 3996.991102 C = 5292.834702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.016 3.984 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.289 1.289 7 C -0.237 4.237 8 H 0.060 0.940 9 N -0.565 5.565 10 C 0.173 3.827 11 C -0.071 4.071 12 C -0.118 4.118 13 C -0.127 4.127 14 C -0.144 4.144 15 C -0.124 4.124 16 C -0.098 4.098 17 C 0.151 3.849 18 C 0.075 3.925 19 H 0.036 0.964 20 C -0.150 4.150 21 C -0.118 4.118 22 C -0.155 4.155 23 C 0.056 3.944 24 O -0.343 6.343 25 H 0.252 0.748 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.036 0.964 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.038 0.962 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -8.091 4.513 9.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.184 4.184 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.215 1.215 7 C -0.366 4.366 8 H 0.078 0.922 9 N -0.282 5.282 10 C 0.047 3.953 11 C -0.075 4.075 12 C -0.137 4.137 13 C -0.145 4.145 14 C -0.162 4.162 15 C -0.143 4.143 16 C -0.117 4.117 17 C 0.025 3.975 18 C 0.015 3.985 19 H 0.054 0.946 20 C -0.189 4.189 21 C -0.156 4.156 22 C -0.193 4.193 23 C -0.022 4.022 24 O -0.261 6.261 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.055 0.945 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.410 -7.770 4.400 8.938 hybrid contribution 0.140 0.780 0.290 0.844 sum 0.550 -6.990 4.689 8.435 Atomic orbital electron populations 1.69991 1.05514 1.25371 1.52077 1.24985 0.94878 0.98459 1.00030 0.86325 0.79809 0.84249 0.76908 1.20220 1.22208 1.21543 1.18959 0.93923 0.85303 1.38461 0.92224 1.43871 1.48822 1.02014 1.33488 1.20076 0.95308 0.89312 0.90585 1.21031 0.96881 0.93669 0.95892 1.20895 0.94696 1.00166 0.97931 1.20936 0.98913 1.01259 0.93374 1.20857 0.97282 1.01409 0.96676 1.21012 0.94963 0.99682 0.98597 1.20943 0.99739 0.98603 0.92406 1.21026 0.89790 1.04171 0.82537 1.23043 0.88964 0.90123 0.96405 0.94649 1.22202 0.99141 1.02313 0.95229 1.21551 0.97986 0.98284 0.97770 1.22190 0.98449 0.99793 0.98834 1.22449 0.93646 1.00412 0.85645 1.88258 1.52541 1.46953 1.38330 0.93822 0.92918 0.93993 0.87374 0.87419 0.87482 0.87311 0.86678 0.94541 0.87348 0.91240 0.91747 0.92407 0.92475 0.92029 0.91399 0.94418 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 11.34 55.49 0.63 -24.96 16 2 C 0.02 0.45 4.91 -17.43 -0.09 0.36 16 3 Si 0.90 22.29 29.61 -169.99 -5.03 17.26 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.37 9.28 -15.06 -0.14 -6.51 16 8 H 0.06 1.63 7.92 -52.48 -0.42 1.21 16 9 N -0.56 -13.65 2.39 -174.61 -0.42 -14.07 16 10 C 0.17 3.61 5.82 -5.19 -0.03 3.58 16 11 C -0.07 -1.46 5.46 -104.62 -0.57 -2.03 16 12 C -0.12 -2.22 9.70 -39.58 -0.38 -2.61 16 13 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 14 C -0.14 -2.44 10.05 -39.59 -0.40 -2.84 16 15 C -0.12 -2.24 10.05 -39.58 -0.40 -2.63 16 16 C -0.10 -1.96 9.70 -39.59 -0.38 -2.34 16 17 C 0.15 3.48 4.91 -4.04 -0.02 3.46 16 18 C 0.07 1.48 2.88 -26.68 -0.08 1.40 16 19 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 20 C -0.15 -2.47 5.42 -26.59 -0.14 -2.61 16 21 C -0.12 -1.63 6.03 -26.55 -0.16 -1.79 16 22 C -0.15 -2.18 6.14 -26.59 -0.16 -2.34 16 23 C 0.06 0.93 6.84 37.21 0.25 1.18 16 24 O -0.34 -7.36 10.15 -35.23 -0.36 -7.72 16 25 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.05 1.08 7.98 -51.93 -0.41 0.66 16 27 H 0.04 0.79 7.99 -51.93 -0.41 0.37 16 28 H 0.11 1.88 8.06 -52.49 -0.42 1.45 16 29 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 30 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.11 2.91 5.34 -51.93 -0.28 2.63 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -29.85 341.26 -10.13 -39.98 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.00 Total: 2.67 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.10 Total: -18.31 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.21 Total: -39.03 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.36 Total: -7.72 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.85 -10.13 -39.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064932633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.740 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds