Wall clock time and date at job start Mon Mar 30 2020 01:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46834 * 300.00181 * 3 2 1 6 6 H 1.48501 * 109.47170 * 60.00065 * 3 2 1 7 7 C 1.38810 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00056 * 157.62708 * 7 2 1 9 9 N 1.36932 * 120.00075 * 337.62900 * 7 2 1 10 10 C 1.46501 * 119.99892 * 146.16085 * 9 7 2 11 11 C 1.50706 * 109.47257 * 270.00071 * 10 9 7 12 12 C 1.38237 * 119.99661 * 269.73049 * 11 10 9 13 13 C 1.38235 * 119.99565 * 179.81526 * 12 11 10 14 14 C 1.38235 * 120.00039 * 0.38863 * 13 12 11 15 15 C 1.38230 * 120.00041 * 359.85731 * 14 13 12 16 16 C 1.38227 * 120.00036 * 90.00296 * 11 10 9 17 17 C 1.46502 * 120.00311 * 326.16152 * 9 7 2 18 18 C 1.52996 * 109.47115 * 264.43589 * 17 9 7 19 19 H 1.09004 * 109.47881 * 305.01884 * 18 17 9 20 20 C 1.53095 * 109.48017 * 184.99752 * 18 17 9 21 21 C 1.53181 * 109.16404 * 182.40405 * 20 18 17 22 22 C 1.53179 * 109.03236 * 56.97960 * 21 20 18 23 23 C 1.53092 * 109.16397 * 303.01702 * 22 21 20 24 24 O 1.42901 * 109.48218 * 65.05197 * 18 17 9 25 25 H 0.96999 * 120.00374 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47212 * 30.00231 * 10 9 7 27 27 H 1.09003 * 109.47116 * 150.00265 * 10 9 7 28 28 H 1.07997 * 120.00198 * 359.97438 * 12 11 10 29 29 H 1.08003 * 119.99647 * 180.23353 * 13 12 11 30 30 H 1.08001 * 119.99550 * 179.84106 * 14 13 12 31 31 H 1.08001 * 120.00071 * 179.97438 * 15 14 13 32 32 H 1.08000 * 119.99979 * 359.97438 * 16 11 10 33 33 H 1.08995 * 109.47249 * 144.42933 * 17 9 7 34 34 H 1.09002 * 109.46504 * 24.42938 * 17 9 7 35 35 H 1.08997 * 109.52297 * 302.31419 * 20 18 17 36 36 H 1.09004 * 109.52347 * 62.49816 * 20 18 17 37 37 H 1.08993 * 109.54060 * 176.84683 * 21 20 18 38 38 H 1.08997 * 109.54236 * 297.11793 * 21 20 18 39 39 H 1.09001 * 109.51982 * 183.11439 * 22 21 20 40 40 H 1.08998 * 109.57176 * 62.95691 * 22 21 20 41 41 H 1.08996 * 109.48109 * 297.62819 * 23 22 21 42 42 H 1.09002 * 109.47677 * 177.59068 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0293 -1.2372 -0.3566 9 7 1.4029 -2.3436 0.4503 10 6 1.7235 -3.6350 -0.1627 11 6 0.7850 -3.8915 -1.3137 12 6 -0.4072 -4.5572 -1.0981 13 6 -1.2698 -4.7891 -2.1531 14 6 -0.9365 -4.3625 -3.4250 15 6 0.2580 -3.7013 -3.6414 16 6 1.1189 -3.4662 -2.5858 17 6 0.4326 -2.2735 1.5456 18 6 1.1360 -2.5758 2.8702 19 1 1.6444 -3.5375 2.8006 20 6 0.1017 -2.6256 3.9979 21 6 0.8200 -2.8689 5.3287 22 6 1.8613 -1.7661 5.5432 23 6 2.8277 -1.7496 4.3560 24 8 2.0918 -1.5502 3.1472 25 1 -0.4850 0.8400 0.0004 26 1 2.7504 -3.6189 -0.5279 27 1 1.6139 -4.4264 0.5788 28 1 -0.6659 -4.8937 -0.1051 29 1 -2.2030 -5.3058 -1.9840 30 1 -1.6093 -4.5460 -4.2497 31 1 0.5186 -3.3684 -4.6353 32 1 2.0522 -2.9496 -2.7548 33 1 -0.3576 -3.0054 1.3785 34 1 -0.0003 -1.2738 1.5840 35 1 -0.4354 -1.6781 4.0416 36 1 -0.6027 -3.4362 3.8106 37 1 0.0956 -2.8497 6.1428 38 1 1.3163 -3.8390 5.3032 39 1 2.4155 -1.9620 6.4612 40 1 1.3606 -0.8009 5.6189 41 1 3.3583 -2.7004 4.3059 42 1 3.5451 -0.9389 4.4826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064932633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:03 Heat of formation + Delta-G solvation = -25.076950 kcal Electronic energy + Delta-G solvation = -22028.142767 eV Core-core repulsion = 18972.581580 eV Total energy + Delta-G solvation = -3055.561187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.26928 -39.80194 -37.20736 -34.35202 -33.71973 -32.94629 -31.57754 -31.18827 -27.99689 -27.22827 -25.18984 -24.04074 -23.27154 -22.56532 -21.48831 -20.99561 -18.63145 -17.55777 -17.14815 -16.75659 -16.38635 -15.96292 -15.87718 -15.60209 -15.37807 -15.23337 -15.00016 -14.31493 -14.10263 -13.85386 -13.39663 -13.35822 -13.25838 -13.13557 -12.74695 -12.49866 -12.40296 -12.29390 -12.03335 -11.89944 -11.78606 -11.69175 -11.60403 -11.46677 -10.99597 -10.44454 -10.09967 -9.61129 -9.42710 -8.52474 -7.75811 -5.27500 0.69404 0.71487 1.43670 1.48092 1.56137 2.56134 3.07160 3.16775 3.36699 3.78047 3.98219 4.06233 4.08538 4.13551 4.24304 4.33049 4.33753 4.38326 4.41935 4.58558 4.62827 4.68650 4.81673 4.84780 4.91472 4.94619 4.99180 5.01214 5.09208 5.14715 5.16821 5.32220 5.35615 5.36291 5.44481 5.72047 5.74944 5.77085 5.87163 6.02512 6.35384 6.48979 6.75677 7.23892 7.93243 8.42422 9.22497 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.007004 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.297197 B = 3996.991102 C = 5292.834702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.028 4.028 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.232 4.232 8 H 0.049 0.951 9 N -0.578 5.578 10 C 0.176 3.824 11 C -0.094 4.094 12 C -0.129 4.129 13 C -0.128 4.128 14 C -0.141 4.141 15 C -0.132 4.132 16 C -0.123 4.123 17 C 0.155 3.845 18 C 0.082 3.918 19 H 0.041 0.959 20 C -0.146 4.146 21 C -0.113 4.113 22 C -0.150 4.150 23 C 0.048 3.952 24 O -0.386 6.386 25 H 0.245 0.755 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.119 0.881 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 -9.719 5.195 11.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.225 4.225 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.362 4.362 8 H 0.066 0.934 9 N -0.296 5.296 10 C 0.050 3.950 11 C -0.097 4.097 12 C -0.148 4.148 13 C -0.146 4.146 14 C -0.159 4.159 15 C -0.150 4.150 16 C -0.142 4.142 17 C 0.029 3.971 18 C 0.022 3.978 19 H 0.059 0.941 20 C -0.185 4.185 21 C -0.150 4.150 22 C -0.187 4.187 23 C -0.029 4.029 24 O -0.305 6.305 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.122 0.878 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.072 -9.425 5.083 10.709 hybrid contribution 0.316 1.172 0.022 1.214 sum 0.245 -8.254 5.104 9.707 Atomic orbital electron populations 1.70110 1.06452 1.25195 1.54253 1.25463 0.95402 1.00571 1.01067 0.85568 0.79111 0.81605 0.76281 1.19660 1.22321 1.22242 1.19019 0.93524 0.86635 1.37048 0.93354 1.43954 1.48865 1.02267 1.34533 1.20076 0.95257 0.88269 0.91371 1.21003 0.97582 0.95276 0.95791 1.21123 0.94395 1.00106 0.99204 1.21354 0.99660 1.00603 0.92983 1.21313 0.97067 0.99807 0.97742 1.21329 0.95096 0.99483 0.99066 1.21057 1.00221 0.99550 0.93331 1.20885 0.90083 1.02014 0.84162 1.22804 0.89446 0.89717 0.95802 0.94114 1.22141 0.98569 1.01987 0.95758 1.21551 0.98208 0.98704 0.96586 1.22151 0.98190 0.99477 0.98907 1.22689 0.94062 1.01193 0.84965 1.88173 1.53466 1.47946 1.40963 0.94526 0.93400 0.92117 0.86291 0.84234 0.84050 0.85090 0.87828 0.94235 0.91152 0.93123 0.90167 0.90075 0.91079 0.88854 0.92576 0.93302 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.57 11.34 21.65 0.25 -54.32 16 2 C -0.03 -1.62 4.91 84.86 0.42 -1.21 16 3 Si 0.94 47.10 29.61 68.60 2.03 49.13 16 4 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 6 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 7 C -0.23 -12.83 9.28 84.03 0.78 -12.05 16 8 H 0.05 2.73 7.92 -2.91 -0.02 2.71 16 9 N -0.58 -28.52 2.39 -706.33 -1.69 -30.21 16 10 C 0.18 7.39 5.82 85.63 0.50 7.89 16 11 C -0.09 -3.82 5.46 -19.87 -0.11 -3.93 16 12 C -0.13 -4.72 9.70 22.27 0.22 -4.50 16 13 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 14 C -0.14 -4.40 10.05 22.27 0.22 -4.17 16 15 C -0.13 -4.56 10.05 22.27 0.22 -4.33 16 16 C -0.12 -4.94 9.70 22.27 0.22 -4.72 16 17 C 0.15 7.26 4.91 86.38 0.42 7.69 16 18 C 0.08 3.22 2.88 30.62 0.09 3.31 16 19 H 0.04 1.53 8.12 -2.38 -0.02 1.51 16 20 C -0.15 -4.62 5.42 30.69 0.17 -4.46 16 21 C -0.11 -2.79 6.03 30.71 0.19 -2.60 16 22 C -0.15 -3.85 6.14 30.68 0.19 -3.67 16 23 C 0.05 1.52 6.84 72.01 0.49 2.01 16 24 O -0.39 -16.69 10.15 -148.98 -1.51 -18.20 16 25 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 26 H 0.05 2.01 7.98 -2.39 -0.02 1.99 16 27 H 0.06 2.26 7.99 -2.39 -0.02 2.25 16 28 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 29 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.10 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.04 1.76 8.11 -2.39 -0.02 1.74 16 34 H 0.07 3.92 5.34 -2.39 -0.01 3.91 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -65.96 341.26 4.27 -61.69 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.96 Total: 20.52 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 4.23 Total: -28.60 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -1.44 Total: -84.53 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.51 Total: -18.20 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -65.96 4.27 -61.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064932633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.614 kcal (2) G-P(sol) polarization free energy of solvation -65.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds