Wall clock time and date at job start Mon Mar 30 2020 01:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36013 * 117.00096 * 2 1 4 4 C 1.38224 * 119.83353 * 0.02562 * 3 2 1 5 5 C 1.38295 * 119.88405 * 179.74448 * 4 3 2 6 6 C 1.38031 * 119.92629 * 0.67564 * 5 4 3 7 7 C 1.50696 * 119.71166 * 179.62122 * 6 5 4 8 8 C 1.38726 * 120.58367 * 359.34421 * 6 5 4 9 9 C 1.38214 * 119.89198 * 0.18510 * 8 6 5 10 10 N 1.39701 * 122.96631 * 180.47886 * 9 8 6 11 11 C 1.46892 * 111.00143 * 105.41840 * 10 9 8 12 12 C 1.53004 * 109.47281 * 167.41633 * 11 10 9 13 13 C 1.50694 * 109.47465 * 185.31942 * 12 11 10 14 14 H 1.08001 * 120.00090 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00087 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00132 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99922 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47448 * 89.99997 * 17 15 13 19 19 H 1.48504 * 109.47185 * 210.00243 * 17 15 13 20 20 H 1.48501 * 109.47402 * 329.99729 * 17 15 13 21 21 C 1.46442 * 113.09529 * 339.89335 * 10 9 8 22 22 C 1.53382 * 108.63896 * 53.30071 * 21 10 9 23 23 C 1.50809 * 118.09884 * 179.97438 * 8 6 5 24 24 H 1.08998 * 109.47031 * 59.99844 * 1 2 3 25 25 H 1.08998 * 109.47031 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47032 * 300.00248 * 1 2 3 27 27 H 1.07992 * 120.05796 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.03702 * 180.41292 * 5 4 3 29 29 H 1.08998 * 109.47172 * 269.72674 * 7 6 5 30 30 H 1.09003 * 109.47690 * 149.72873 * 7 6 5 31 31 H 1.08998 * 109.47160 * 29.72325 * 7 6 5 32 32 H 1.09002 * 109.47539 * 287.41825 * 11 10 9 33 33 H 1.09000 * 109.47318 * 47.41665 * 11 10 9 34 34 H 1.09000 * 109.47006 * 305.32360 * 12 11 10 35 35 H 1.09003 * 109.46464 * 65.31621 * 12 11 10 36 36 H 0.96995 * 120.00026 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.60974 * 293.55301 * 21 10 9 38 38 H 1.09002 * 109.74219 * 173.12546 * 21 10 9 39 39 H 1.09004 * 109.76536 * 172.13329 * 22 21 10 40 40 H 1.08999 * 109.81338 * 51.38285 * 22 21 10 41 41 H 1.09000 * 109.43562 * 284.60791 * 23 8 6 42 42 H 1.08998 * 109.43078 * 44.48243 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2903 2.3689 0.0005 5 6 1.9171 3.6017 0.0059 6 6 3.2955 3.6734 -0.0034 7 6 3.9734 5.0193 -0.0062 8 6 4.0625 2.5174 -0.0045 9 6 3.4448 1.2810 -0.0001 10 7 4.1536 0.0772 0.0090 11 6 4.1018 -0.5543 1.3342 12 6 4.6072 -1.9949 1.2329 13 6 4.4324 -2.6833 2.5619 14 1 4.0032 -2.1472 3.3955 15 6 4.8202 -3.9977 2.7138 16 7 5.3432 -4.6504 1.6989 17 14 4.6028 -4.8512 4.3611 18 1 3.2675 -5.4992 4.4105 19 1 5.6594 -5.8813 4.5281 20 1 4.7087 -3.8518 5.4543 21 6 5.5367 0.2215 -0.4499 22 6 6.2118 1.3291 0.3687 23 6 5.5636 2.6610 -0.0155 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2120 2.3104 0.0014 28 1 1.3287 4.5073 0.0131 29 1 4.1342 5.3430 -1.0345 30 1 4.9330 4.9439 0.5052 31 1 3.3433 5.7445 0.5086 32 1 4.7312 0.0036 2.0275 33 1 3.0738 -0.5546 1.6966 34 1 4.0381 -2.5268 0.4705 35 1 5.6629 -1.9912 0.9616 36 1 5.6158 -5.5752 1.8057 37 1 5.5455 0.4902 -1.5062 38 1 6.0720 -0.7172 -0.3067 39 1 7.2774 1.3584 0.1411 40 1 6.0672 1.1424 1.4328 41 1 5.8931 2.9499 -1.0135 42 1 5.8598 3.4282 0.6999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069024459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:58 Heat of formation + Delta-G solvation = -17.259616 kcal Electronic energy + Delta-G solvation = -21943.942642 eV Core-core repulsion = 18888.720440 eV Total energy + Delta-G solvation = -3055.222202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64057 -38.28517 -36.82950 -33.69526 -32.91652 -31.13805 -30.37397 -28.89804 -27.49749 -25.73530 -25.23618 -23.75923 -22.96653 -20.97013 -20.28875 -18.73590 -17.50991 -16.52907 -16.38789 -15.67089 -15.42463 -14.56767 -14.43387 -14.35996 -14.02111 -13.77859 -13.71641 -13.41358 -12.92104 -12.59384 -12.38554 -12.19958 -12.06282 -11.74304 -11.65781 -11.27554 -11.20006 -11.07623 -10.87310 -10.60214 -10.48976 -10.42983 -10.32682 -9.79739 -9.47821 -9.08014 -8.67845 -8.28467 -7.99830 -7.14134 -5.95599 -3.97348 1.53378 1.65809 3.34596 3.40520 3.43864 3.61790 3.87133 4.34831 4.53332 4.86587 4.95009 5.12531 5.18596 5.19996 5.25550 5.34765 5.40227 5.40534 5.42810 5.60010 5.65253 5.70236 5.72840 5.80353 5.90988 6.01260 6.04810 6.18632 6.22083 6.31222 6.40148 6.52123 6.55033 6.71595 6.80323 6.97148 7.04436 7.51894 7.55968 7.74939 7.94235 8.08104 8.15053 8.47712 9.09303 9.65649 11.15862 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019928 B = 0.005284 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.734138 B = 5297.559021 C = 6128.968150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.291 6.291 3 C 0.120 3.880 4 C -0.202 4.202 5 C -0.107 4.107 6 C -0.112 4.112 7 C -0.109 4.109 8 C -0.094 4.094 9 C 0.104 3.896 10 N -0.488 5.488 11 C 0.073 3.927 12 C 0.029 3.971 13 C -0.518 4.518 14 H 0.053 0.947 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.054 3.946 22 C -0.161 4.161 23 C -0.073 4.073 24 H 0.048 0.952 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.818 17.206 -4.935 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.203 6.203 3 C 0.072 3.928 4 C -0.222 4.222 5 C -0.126 4.126 6 C -0.113 4.113 7 C -0.165 4.165 8 C -0.098 4.098 9 C 0.005 3.995 10 N -0.203 5.203 11 C -0.051 4.051 12 C -0.008 4.008 13 C -0.557 4.557 14 H 0.071 0.929 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.073 4.073 22 C -0.199 4.199 23 C -0.110 4.110 24 H 0.067 0.933 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.143 0.857 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.860 16.447 -5.290 17.948 hybrid contribution -0.146 0.071 1.337 1.346 sum -5.006 16.518 -3.954 17.707 Atomic orbital electron populations 1.23014 0.79648 1.03755 1.00399 1.86342 1.19960 1.25863 1.88099 1.18951 0.90945 0.84549 0.98326 1.20973 0.99534 0.92197 1.09452 1.20545 0.93664 0.96628 1.01776 1.19535 0.93333 0.94507 1.03926 1.20750 1.00447 0.93562 1.01757 1.19575 0.95768 0.91396 1.03024 1.18023 0.89730 0.89449 1.02250 1.58768 1.13922 1.18962 1.28651 1.22423 1.00877 0.97530 0.84283 1.19114 0.96157 0.88248 0.97269 1.21151 1.40954 0.96742 0.96829 0.92886 1.24965 0.95301 0.97423 0.96508 1.69970 1.42304 1.10628 1.30363 0.86617 0.77781 0.79373 0.84352 1.20671 1.21251 1.19959 1.22251 0.87553 0.99295 0.98203 1.22217 1.00164 0.95670 1.01888 1.20528 0.90540 0.98247 1.01701 0.93323 0.88362 0.93244 0.85747 0.86440 0.91739 0.91569 0.92121 0.95608 0.91446 0.95435 0.96566 0.93051 0.91268 0.88680 0.90937 0.90938 0.90791 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.29 -5.28 9.07 -19.78 -0.18 -5.46 16 3 C 0.12 2.09 6.32 -38.93 -0.25 1.84 16 4 C -0.20 -2.89 9.02 -39.57 -0.36 -3.24 16 5 C -0.11 -1.40 9.68 -39.64 -0.38 -1.79 16 6 C -0.11 -1.51 5.88 -104.52 -0.61 -2.13 16 7 C -0.11 -1.09 9.53 36.00 0.34 -0.75 16 8 C -0.09 -1.46 5.74 -104.40 -0.60 -2.06 16 9 C 0.10 1.89 5.14 -83.62 -0.43 1.46 16 10 N -0.49 -9.79 4.23 -171.11 -0.72 -10.52 16 11 C 0.07 1.64 4.55 -3.83 -0.02 1.62 16 12 C 0.03 0.79 4.79 -27.88 -0.13 0.65 16 13 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -27.10 13.29 55.43 0.74 -26.37 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.05 0.96 5.69 -3.88 -0.02 0.94 16 22 C -0.16 -2.40 6.03 -26.52 -0.16 -2.56 16 23 C -0.07 -0.97 5.04 -27.82 -0.14 -1.11 16 24 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 25 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 27 H 0.12 1.46 6.26 -52.49 -0.33 1.13 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.63 6.02 -51.93 -0.31 0.31 16 31 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.03 0.57 6.34 -51.93 -0.33 0.25 16 33 H 0.07 1.59 6.82 -51.93 -0.35 1.24 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.02 0.45 6.57 -51.93 -0.34 0.10 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 38 H 0.09 1.82 6.12 -51.93 -0.32 1.50 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.21 6.36 -51.93 -0.33 0.88 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.88 6.45 -51.93 -0.33 0.55 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -32.07 326.47 -8.81 -40.88 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.36 Total: -0.93 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -2.18 Total: -19.41 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.01 Total: -36.88 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.18 Total: -5.46 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.07 -8.81 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069024459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.617 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds