Wall clock time and date at job start Mon Mar 30 2020 01:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36013 * 117.00096 * 2 1 4 4 C 1.38224 * 119.83353 * 0.02562 * 3 2 1 5 5 C 1.38295 * 119.88405 * 179.74448 * 4 3 2 6 6 C 1.38031 * 119.92629 * 0.67564 * 5 4 3 7 7 C 1.50696 * 119.71166 * 179.62122 * 6 5 4 8 8 C 1.38726 * 120.58367 * 359.34421 * 6 5 4 9 9 C 1.38214 * 119.89198 * 0.18510 * 8 6 5 10 10 N 1.39701 * 122.96631 * 180.47886 * 9 8 6 11 11 C 1.46892 * 111.00143 * 105.41840 * 10 9 8 12 12 C 1.53004 * 109.47281 * 167.41633 * 11 10 9 13 13 C 1.50694 * 109.47465 * 185.31942 * 12 11 10 14 14 H 1.08001 * 120.00090 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00087 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00132 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99922 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47448 * 89.99997 * 17 15 13 19 19 H 1.48504 * 109.47185 * 210.00243 * 17 15 13 20 20 H 1.48501 * 109.47402 * 329.99729 * 17 15 13 21 21 C 1.46442 * 113.09529 * 339.89335 * 10 9 8 22 22 C 1.53382 * 108.63896 * 53.30071 * 21 10 9 23 23 C 1.50809 * 118.09884 * 179.97438 * 8 6 5 24 24 H 1.08998 * 109.47031 * 59.99844 * 1 2 3 25 25 H 1.08998 * 109.47031 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47032 * 300.00248 * 1 2 3 27 27 H 1.07992 * 120.05796 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.03702 * 180.41292 * 5 4 3 29 29 H 1.08998 * 109.47172 * 269.72674 * 7 6 5 30 30 H 1.09003 * 109.47690 * 149.72873 * 7 6 5 31 31 H 1.08998 * 109.47160 * 29.72325 * 7 6 5 32 32 H 1.09002 * 109.47539 * 287.41825 * 11 10 9 33 33 H 1.09000 * 109.47318 * 47.41665 * 11 10 9 34 34 H 1.09000 * 109.47006 * 305.32360 * 12 11 10 35 35 H 1.09003 * 109.46464 * 65.31621 * 12 11 10 36 36 H 0.96995 * 120.00026 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.60974 * 293.55301 * 21 10 9 38 38 H 1.09002 * 109.74219 * 173.12546 * 21 10 9 39 39 H 1.09004 * 109.76536 * 172.13329 * 22 21 10 40 40 H 1.08999 * 109.81338 * 51.38285 * 22 21 10 41 41 H 1.09000 * 109.43562 * 284.60791 * 23 8 6 42 42 H 1.08998 * 109.43078 * 44.48243 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2903 2.3689 0.0005 5 6 1.9171 3.6017 0.0059 6 6 3.2955 3.6734 -0.0034 7 6 3.9734 5.0193 -0.0062 8 6 4.0625 2.5174 -0.0045 9 6 3.4448 1.2810 -0.0001 10 7 4.1536 0.0772 0.0090 11 6 4.1018 -0.5543 1.3342 12 6 4.6072 -1.9949 1.2329 13 6 4.4324 -2.6833 2.5619 14 1 4.0032 -2.1472 3.3955 15 6 4.8202 -3.9977 2.7138 16 7 5.3432 -4.6504 1.6989 17 14 4.6028 -4.8512 4.3611 18 1 3.2675 -5.4992 4.4105 19 1 5.6594 -5.8813 4.5281 20 1 4.7087 -3.8518 5.4543 21 6 5.5367 0.2215 -0.4499 22 6 6.2118 1.3291 0.3687 23 6 5.5636 2.6610 -0.0155 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2120 2.3104 0.0014 28 1 1.3287 4.5073 0.0131 29 1 4.1342 5.3430 -1.0345 30 1 4.9330 4.9439 0.5052 31 1 3.3433 5.7445 0.5086 32 1 4.7312 0.0036 2.0275 33 1 3.0738 -0.5546 1.6966 34 1 4.0381 -2.5268 0.4705 35 1 5.6629 -1.9912 0.9616 36 1 5.6158 -5.5752 1.8057 37 1 5.5455 0.4902 -1.5062 38 1 6.0720 -0.7172 -0.3067 39 1 7.2774 1.3584 0.1411 40 1 6.0672 1.1424 1.4328 41 1 5.8931 2.9499 -1.0135 42 1 5.8598 3.4282 0.6999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069024459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:58 Heat of formation + Delta-G solvation = -36.405180 kcal Electronic energy + Delta-G solvation = -21944.772856 eV Core-core repulsion = 18888.720440 eV Total energy + Delta-G solvation = -3056.052416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86039 -39.53736 -38.08506 -35.46728 -34.48503 -32.61800 -31.57163 -30.56473 -28.53116 -27.05886 -26.66844 -25.38510 -24.19729 -22.68635 -21.46294 -20.13552 -18.84452 -18.42255 -17.59861 -17.14564 -16.63748 -16.46667 -15.81059 -15.68572 -15.16420 -15.08296 -14.87395 -14.74897 -14.23194 -13.98062 -13.75549 -13.50400 -13.36981 -13.17318 -12.86672 -12.80163 -12.67779 -12.46696 -12.33126 -12.17052 -12.02611 -11.74675 -11.60048 -11.46632 -11.31229 -11.19954 -10.54268 -10.03415 -9.16200 -8.46411 -8.20134 -6.31967 0.39580 0.52641 1.38556 1.40724 1.51706 2.39237 2.52579 2.72989 3.03947 3.12519 3.79281 3.88530 3.98407 4.05094 4.16337 4.24534 4.32794 4.36707 4.40591 4.45335 4.48149 4.58931 4.71154 4.73578 4.78922 4.83241 4.92515 4.93363 5.00323 5.03707 5.11790 5.17051 5.28192 5.39613 5.44607 5.45372 5.63590 5.71701 5.78804 5.95563 6.13480 6.28901 6.34796 6.81455 6.83442 7.36558 8.91899 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019928 B = 0.005284 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.734138 B = 5297.559021 C = 6128.968150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.332 6.332 3 C 0.093 3.907 4 C -0.202 4.202 5 C -0.101 4.101 6 C -0.114 4.114 7 C -0.106 4.106 8 C -0.101 4.101 9 C 0.060 3.940 10 N -0.504 5.504 11 C 0.098 3.902 12 C 0.043 3.957 13 C -0.543 4.543 14 H 0.055 0.945 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.264 1.264 21 C 0.052 3.948 22 C -0.154 4.154 23 C -0.068 4.068 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.023 0.977 33 H 0.051 0.949 34 H -0.011 1.011 35 H -0.002 1.002 36 H 0.264 0.736 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.368 20.048 -4.274 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.047 3.953 4 C -0.221 4.221 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.163 4.163 8 C -0.104 4.104 9 C -0.037 4.037 10 N -0.220 5.220 11 C -0.026 4.026 12 C 0.006 3.994 13 C -0.582 4.582 14 H 0.073 0.927 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.791 3.209 18 H -0.198 1.198 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.075 4.075 22 C -0.192 4.192 23 C -0.104 4.104 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.166 0.834 28 H 0.171 0.829 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.007 0.993 35 H 0.016 0.984 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.422 19.323 -4.641 20.599 hybrid contribution -0.033 -0.740 1.055 1.289 sum -5.455 18.583 -3.586 19.696 Atomic orbital electron populations 1.23241 0.77484 1.04632 1.02016 1.86269 1.22524 1.27211 1.88582 1.19296 0.91180 0.85274 0.99576 1.21289 1.00676 0.91657 1.08439 1.21040 0.94012 0.97339 0.99516 1.19985 0.93727 0.95401 1.02389 1.20818 1.00763 0.91617 1.03061 1.19914 0.97189 0.91090 1.02213 1.18299 0.90278 0.89482 1.05608 1.58607 1.15371 1.21184 1.26865 1.21891 0.99237 0.95170 0.86348 1.18877 0.94421 0.90632 0.95478 1.21525 1.41432 0.97638 0.97563 0.92697 1.25931 0.94524 0.98080 1.00790 1.70109 1.42915 1.11135 1.32834 0.85433 0.78104 0.78210 0.79197 1.19754 1.20348 1.18809 1.22241 0.86718 0.99083 0.99440 1.22143 1.01497 0.95823 0.99785 1.20591 0.89023 0.97361 1.03469 0.91277 0.88038 0.91845 0.83402 0.82900 0.90259 0.90883 0.90320 0.95863 0.93044 0.99302 0.98384 0.92681 0.89958 0.91621 0.88604 0.93275 0.88688 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.81 113.37 1.11 1.65 16 2 O -0.33 -12.60 9.07 -93.70 -0.85 -13.45 16 3 C 0.09 3.29 6.32 22.69 0.14 3.44 16 4 C -0.20 -5.38 9.02 22.28 0.20 -5.18 16 5 C -0.10 -2.28 9.68 22.23 0.22 -2.07 16 6 C -0.11 -2.71 5.88 -19.80 -0.12 -2.83 16 7 C -0.11 -1.65 9.53 71.23 0.68 -0.97 16 8 C -0.10 -2.99 5.74 -19.72 -0.11 -3.10 16 9 C 0.06 2.23 5.14 38.31 0.20 2.43 16 10 N -0.50 -21.38 4.23 -695.26 -2.94 -24.32 16 11 C 0.10 4.75 4.55 86.31 0.39 5.14 16 12 C 0.04 2.48 4.79 29.85 0.14 2.63 16 13 C -0.54 -32.64 9.11 25.60 0.23 -32.40 16 14 H 0.05 3.19 7.74 -2.91 -0.02 3.17 16 15 C 0.00 0.29 5.46 84.65 0.46 0.75 16 16 N -0.93 -58.30 13.29 21.45 0.28 -58.01 16 17 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 21 C 0.05 1.93 5.69 86.52 0.49 2.42 16 22 C -0.15 -4.56 6.03 30.73 0.19 -4.38 16 23 C -0.07 -1.65 5.04 29.89 0.15 -1.49 16 24 H 0.07 1.43 7.65 -2.39 -0.02 1.41 16 25 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.06 1.40 7.65 -2.38 -0.02 1.38 16 27 H 0.15 3.10 6.26 -2.91 -0.02 3.08 16 28 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.05 6.02 -2.39 -0.01 1.04 16 31 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 32 H 0.02 1.10 6.34 -2.39 -0.02 1.09 16 33 H 0.05 2.60 6.82 -2.39 -0.02 2.58 16 34 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.00 -0.13 6.57 -2.39 -0.02 -0.14 16 36 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 38 H 0.07 2.74 6.12 -2.39 -0.01 2.72 16 39 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.05 1.68 6.36 -2.39 -0.02 1.66 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 42 H 0.10 1.96 6.45 -2.39 -0.02 1.95 16 Total: -1.00 -73.34 326.47 3.90 -69.44 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.01 Total: 12.75 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 4.38 Total: -33.97 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -2.66 Total: -82.34 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.85 Total: -13.45 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -73.34 3.90 -69.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069024459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.033 kcal (2) G-P(sol) polarization free energy of solvation -73.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds