Wall clock time and date at job start Mon Mar 30 2020 02:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 C 1.50707 * 119.99972 * 180.23526 * 5 4 3 7 7 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 8 8 C 1.50706 * 120.00280 * 179.82644 * 7 5 4 9 9 C 1.50700 * 109.46705 * 85.02032 * 8 7 5 10 10 O 1.21284 * 120.00375 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99805 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00314 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47488 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47356 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47464 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99648 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00382 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99762 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99981 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47308 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47063 * 120.00182 * 19 17 15 22 22 H 1.48497 * 109.46958 * 239.99822 * 19 17 15 23 23 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 25 25 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 26 26 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 27 27 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 28 28 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 29 29 H 1.09004 * 109.47201 * 270.17114 * 6 5 4 30 30 H 1.08996 * 109.46896 * 30.17288 * 6 5 4 31 31 H 1.08999 * 109.46646 * 150.17148 * 6 5 4 32 32 H 1.08994 * 109.47063 * 205.01826 * 8 7 5 33 33 H 1.09001 * 109.46968 * 325.02719 * 8 7 5 34 34 H 0.97002 * 120.00139 * 0.02562 * 11 9 8 35 35 H 1.09010 * 109.46984 * 300.00180 * 12 11 9 36 36 H 1.08999 * 109.47250 * 59.99984 * 12 11 9 37 37 H 1.09001 * 109.47067 * 300.00161 * 13 12 11 38 38 H 1.08999 * 109.47141 * 59.99608 * 13 12 11 39 39 H 1.09001 * 109.47220 * 300.00136 * 14 13 12 40 40 H 1.09006 * 109.47070 * 60.00033 * 14 13 12 41 41 H 0.97003 * 119.99649 * 180.02562 * 18 17 15 42 42 H 1.07996 * 120.00479 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 5.7787 -0.0002 -0.0013 7 6 3.5806 -1.1971 0.0006 8 6 4.3340 -2.5023 0.0017 9 6 4.6923 -2.8742 1.4175 10 8 4.3675 -2.1509 2.3353 11 7 5.3738 -4.0105 1.6638 12 6 5.7217 -4.3725 3.0401 13 6 6.4878 -5.6968 3.0411 14 6 6.8517 -6.0744 4.4784 15 6 7.6057 -7.3791 4.4795 16 1 7.8058 -7.8880 3.5481 17 6 8.0402 -7.9234 5.6695 18 7 7.7961 -7.3040 6.8038 19 14 8.9755 -9.5403 5.6707 20 1 9.1192 -10.0301 4.2763 21 1 10.3213 -9.3333 6.2633 22 1 8.2301 -10.5427 6.4737 23 6 2.1980 -1.1970 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8898 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6584 2.1326 -0.0005 28 1 4.1205 2.1325 -0.0099 29 1 6.1418 -0.0013 -1.0291 30 1 6.1422 0.8902 0.5115 31 1 6.1421 -0.8897 0.5134 32 1 3.7091 -3.2829 -0.4319 33 1 5.2448 -2.3965 -0.5877 34 1 5.6340 -4.5889 0.9297 35 1 6.3461 -3.5915 3.4743 36 1 4.8108 -4.4788 3.6291 37 1 5.8638 -6.4778 2.6067 38 1 7.3988 -5.5900 2.4522 39 1 7.4758 -5.2933 4.9124 40 1 5.9409 -6.1811 5.0677 41 1 8.1021 -7.6867 7.6410 42 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:24 Heat of formation + Delta-G solvation = -48.393706 kcal Electronic energy + Delta-G solvation = -20137.480050 eV Core-core repulsion = 17080.907773 eV Total energy + Delta-G solvation = -3056.572277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24178 -38.88292 -35.43183 -34.28482 -33.31276 -32.48769 -31.17832 -29.41965 -28.30545 -26.35032 -24.89852 -23.21231 -22.20722 -20.83468 -20.55560 -19.54518 -16.85055 -16.46185 -16.24615 -15.99631 -15.44871 -15.13708 -14.71076 -14.43088 -14.13353 -13.97288 -13.49804 -13.27520 -13.14811 -12.86646 -12.81816 -12.29912 -12.18634 -12.05456 -11.83481 -11.60923 -11.59845 -11.05859 -11.03051 -10.92536 -10.74089 -10.57670 -9.88350 -9.87648 -9.40108 -9.12099 -8.82621 -8.75708 -8.45410 -8.38466 -6.02817 -4.05944 1.24166 1.31964 2.81009 3.29170 3.34510 3.37017 3.40518 3.76006 4.43509 4.50119 4.63890 4.76202 4.89064 5.02376 5.06164 5.09944 5.27917 5.33033 5.36409 5.40957 5.43488 5.50487 5.61532 5.63115 5.73764 5.77846 5.81084 6.01682 6.12245 6.16195 6.34735 6.48868 6.49876 6.56783 6.59576 6.83559 6.94715 7.00067 7.62879 7.73084 7.75228 7.96087 8.36545 8.43672 9.01049 9.58370 11.08538 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.002612 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.655660 B =10715.631033 C =10942.801466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.074 4.074 6 C -0.117 4.117 7 C -0.059 4.059 8 C -0.106 4.106 9 C 0.508 3.492 10 O -0.533 6.533 11 N -0.729 5.729 12 C 0.117 3.883 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.104 4.104 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.398 0.602 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 14.724 -18.328 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.074 4.074 6 C -0.173 4.173 7 C -0.060 4.060 8 C -0.146 4.146 9 C 0.293 3.707 10 O -0.410 6.410 11 N -0.380 5.380 12 C -0.006 4.006 13 C -0.158 4.158 14 C -0.015 4.015 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.122 4.122 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.231 0.769 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.478 15.228 -17.447 25.418 hybrid contribution 0.676 -1.221 -0.135 1.402 sum -9.802 14.007 -17.581 24.523 Atomic orbital electron populations 1.20762 0.91330 1.02772 1.02022 1.19822 0.95934 0.93105 1.00571 1.20959 0.94144 0.97346 1.01256 1.20944 0.94148 0.97291 1.01155 1.19683 0.95914 0.92573 0.99194 1.20824 0.91401 1.03237 1.01855 1.19122 0.93315 0.93213 1.00318 1.20723 1.01978 0.96349 0.95525 1.20453 0.78218 0.81216 0.90825 1.90732 1.53160 1.50842 1.46255 1.46233 1.57448 1.23746 1.10565 1.21630 0.99727 0.98184 0.81057 1.21881 0.98296 0.93345 1.02301 1.19036 0.96859 0.96513 0.89043 1.21241 1.35585 1.06397 0.92771 0.92595 1.25040 0.96236 0.97580 0.95671 1.69981 1.46570 1.39044 0.97686 0.86524 0.79643 0.83703 0.78046 1.19759 1.20994 1.20989 1.20839 0.93255 0.97621 1.00456 0.91400 0.91586 0.91677 0.86335 0.86192 0.91231 0.91449 0.91491 0.88168 0.87982 0.76859 0.91865 0.91871 0.92747 0.92743 0.96290 0.96294 0.92972 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -1.01 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 5 C -0.07 -0.87 5.88 -104.62 -0.62 -1.48 16 6 C -0.12 -1.18 9.22 36.01 0.33 -0.85 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 8 C -0.11 -1.11 5.15 -29.03 -0.15 -1.26 16 9 C 0.51 7.40 7.05 -10.99 -0.08 7.32 16 10 O -0.53 -10.18 16.03 5.55 0.09 -10.09 16 11 N -0.73 -10.21 5.56 -60.29 -0.33 -10.54 16 12 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 13 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 14 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.10 -1.20 9.34 -39.58 -0.37 -1.57 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.07 0.75 6.16 -51.93 -0.32 0.43 16 32 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 33 H 0.10 0.85 6.99 -51.93 -0.36 0.48 16 34 H 0.40 4.33 8.47 -40.82 -0.35 3.99 16 35 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -33.56 351.81 -9.20 -42.76 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.90 Total: 0.11 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -3.07 Total: -17.82 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.40 Total: -36.71 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.56 -9.20 -42.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.631 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds