Wall clock time and date at job start Mon Mar 30 2020 02:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 C 1.50707 * 119.99972 * 180.23526 * 5 4 3 7 7 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 8 8 C 1.50706 * 120.00280 * 179.82644 * 7 5 4 9 9 C 1.50700 * 109.46705 * 85.02032 * 8 7 5 10 10 O 1.21284 * 120.00375 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99805 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00314 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47488 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47356 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47464 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99648 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00382 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99762 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99981 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47308 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47063 * 120.00182 * 19 17 15 22 22 H 1.48497 * 109.46958 * 239.99822 * 19 17 15 23 23 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 25 25 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 26 26 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 27 27 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 28 28 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 29 29 H 1.09004 * 109.47201 * 270.17114 * 6 5 4 30 30 H 1.08996 * 109.46896 * 30.17288 * 6 5 4 31 31 H 1.08999 * 109.46646 * 150.17148 * 6 5 4 32 32 H 1.08994 * 109.47063 * 205.01826 * 8 7 5 33 33 H 1.09001 * 109.46968 * 325.02719 * 8 7 5 34 34 H 0.97002 * 120.00139 * 0.02562 * 11 9 8 35 35 H 1.09010 * 109.46984 * 300.00180 * 12 11 9 36 36 H 1.08999 * 109.47250 * 59.99984 * 12 11 9 37 37 H 1.09001 * 109.47067 * 300.00161 * 13 12 11 38 38 H 1.08999 * 109.47141 * 59.99608 * 13 12 11 39 39 H 1.09001 * 109.47220 * 300.00136 * 14 13 12 40 40 H 1.09006 * 109.47070 * 60.00033 * 14 13 12 41 41 H 0.97003 * 119.99649 * 180.02562 * 18 17 15 42 42 H 1.07996 * 120.00479 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 5.7787 -0.0002 -0.0013 7 6 3.5806 -1.1971 0.0006 8 6 4.3340 -2.5023 0.0017 9 6 4.6923 -2.8742 1.4175 10 8 4.3675 -2.1509 2.3353 11 7 5.3738 -4.0105 1.6638 12 6 5.7217 -4.3725 3.0401 13 6 6.4878 -5.6968 3.0411 14 6 6.8517 -6.0744 4.4784 15 6 7.6057 -7.3791 4.4795 16 1 7.8058 -7.8880 3.5481 17 6 8.0402 -7.9234 5.6695 18 7 7.7961 -7.3040 6.8038 19 14 8.9755 -9.5403 5.6707 20 1 9.1192 -10.0301 4.2763 21 1 10.3213 -9.3333 6.2633 22 1 8.2301 -10.5427 6.4737 23 6 2.1980 -1.1970 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8898 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6584 2.1326 -0.0005 28 1 4.1205 2.1325 -0.0099 29 1 6.1418 -0.0013 -1.0291 30 1 6.1422 0.8902 0.5115 31 1 6.1421 -0.8897 0.5134 32 1 3.7091 -3.2829 -0.4319 33 1 5.2448 -2.3965 -0.5877 34 1 5.6340 -4.5889 0.9297 35 1 6.3461 -3.5915 3.4743 36 1 4.8108 -4.4788 3.6291 37 1 5.8638 -6.4778 2.6067 38 1 7.3988 -5.5900 2.4522 39 1 7.4758 -5.2933 4.9124 40 1 5.9409 -6.1811 5.0677 41 1 8.1021 -7.6867 7.6410 42 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:24 Heat of formation + Delta-G solvation = -68.237778 kcal Electronic energy + Delta-G solvation = -20138.340554 eV Core-core repulsion = 17080.907773 eV Total energy + Delta-G solvation = -3057.432781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.22050 -39.91669 -36.96626 -35.18247 -35.09375 -33.46336 -32.83564 -30.13075 -29.50790 -27.93609 -25.66003 -24.93369 -23.12292 -22.30980 -21.77658 -20.61542 -18.56273 -17.93979 -17.17182 -17.02958 -16.59487 -16.42273 -16.39097 -15.56415 -15.31961 -15.04855 -14.51407 -14.21497 -14.06056 -13.97618 -13.74591 -13.74099 -13.59204 -13.43272 -12.89492 -12.77612 -12.70743 -12.55436 -12.36175 -12.33176 -11.81879 -11.80545 -11.68075 -11.59109 -11.23119 -10.87450 -10.57044 -10.07754 -9.66565 -9.24706 -8.20341 -6.31980 0.42283 0.50585 1.41589 1.41681 1.55054 1.66898 2.24538 2.42478 2.87935 3.13550 3.66953 3.88286 4.00094 4.05678 4.14165 4.20284 4.22893 4.32461 4.37291 4.54385 4.54822 4.63321 4.71430 4.79324 4.84189 4.86051 4.90605 4.93899 5.00958 5.12732 5.16533 5.25032 5.38515 5.45309 5.53127 5.55019 5.69749 5.71036 5.75090 5.83524 6.17329 6.21399 6.62284 6.86104 7.30963 7.37926 8.92110 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.002612 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.655660 B =10715.631033 C =10942.801466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.107 4.107 3 C -0.128 4.128 4 C -0.130 4.130 5 C -0.094 4.094 6 C -0.114 4.114 7 C -0.080 4.080 8 C -0.095 4.095 9 C 0.508 3.492 10 O -0.583 6.583 11 N -0.716 5.716 12 C 0.130 3.870 13 C -0.101 4.101 14 C 0.022 3.978 15 C -0.539 4.539 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.257 1.257 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.122 4.122 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.417 0.583 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.069 0.931 39 H -0.009 1.009 40 H -0.010 1.010 41 H 0.263 0.737 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 14.100 -20.697 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.107 4.107 3 C -0.146 4.146 4 C -0.148 4.148 5 C -0.094 4.094 6 C -0.170 4.170 7 C -0.080 4.080 8 C -0.134 4.134 9 C 0.296 3.704 10 O -0.463 6.463 11 N -0.369 5.369 12 C 0.006 3.994 13 C -0.138 4.138 14 C -0.015 4.015 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.140 4.140 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.157 0.843 28 H 0.154 0.846 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.254 0.746 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.009 0.991 40 H 0.009 0.991 41 H 0.072 0.928 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.406 14.587 -19.870 26.756 hybrid contribution 0.613 -0.952 0.619 1.290 sum -9.793 13.635 -19.251 25.542 Atomic orbital electron populations 1.20796 0.89606 1.03185 1.03089 1.20206 0.97420 0.93045 1.00018 1.21290 0.94294 0.98248 1.00726 1.21253 0.94689 0.97851 1.00958 1.19998 0.96815 0.93004 0.99544 1.20826 0.90585 1.02581 1.03054 1.19379 0.93789 0.93914 1.00938 1.20741 1.03530 0.96569 0.92586 1.21190 0.76877 0.80225 0.92133 1.90713 1.55052 1.52333 1.48221 1.45998 1.57228 1.24185 1.09463 1.21185 0.98330 0.96811 0.83055 1.21586 0.99396 0.94439 0.98422 1.18955 0.94881 0.95298 0.92388 1.21715 1.35489 1.07183 0.93323 0.91426 1.26051 0.97294 1.01648 0.95263 1.70128 1.47952 1.41118 0.98493 0.85349 0.77931 0.78680 0.78784 1.18074 1.20591 1.20595 1.21114 0.93511 0.98476 1.00854 0.89923 0.91612 0.90828 0.84317 0.84589 0.89024 0.91332 0.92883 0.85352 0.85401 0.74600 0.93585 0.93665 0.91275 0.91224 0.99093 0.99137 0.92821 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.01 71.24 0.71 -0.89 16 2 C -0.11 -2.19 5.88 -19.86 -0.12 -2.30 16 3 C -0.13 -2.52 9.70 22.27 0.22 -2.30 16 4 C -0.13 -2.70 9.70 22.27 0.22 -2.48 16 5 C -0.09 -2.12 5.88 -19.86 -0.12 -2.24 16 6 C -0.11 -2.18 9.22 71.24 0.66 -1.52 16 7 C -0.08 -1.84 4.37 -19.86 -0.09 -1.92 16 8 C -0.10 -1.79 5.15 29.10 0.15 -1.65 16 9 C 0.51 14.36 7.05 87.66 0.62 14.98 16 10 O -0.58 -22.59 16.03 -3.04 -0.05 -22.64 16 11 N -0.72 -19.11 5.56 -463.06 -2.57 -21.69 16 12 C 0.13 4.64 5.67 86.38 0.49 5.13 16 13 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 14 C 0.02 1.17 4.97 29.85 0.15 1.32 16 15 C -0.54 -30.09 9.11 25.60 0.23 -29.85 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 18 N -0.94 -57.54 13.29 21.45 0.28 -57.25 16 19 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 C -0.12 -2.71 9.34 22.27 0.21 -2.50 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.06 0.95 8.08 -2.39 -0.02 0.93 16 26 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 27 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 31 H 0.05 1.15 6.16 -2.39 -0.01 1.13 16 32 H 0.13 1.70 8.05 -2.39 -0.02 1.68 16 33 H 0.13 1.75 6.99 -2.39 -0.02 1.74 16 34 H 0.42 7.96 8.47 -92.71 -0.79 7.18 16 35 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 41 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -74.17 351.81 3.85 -70.32 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.21 Total: 15.20 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 3.95 Total: -29.75 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -2.29 Total: -78.94 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -74.17 3.85 -70.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.081 kcal (2) G-P(sol) polarization free energy of solvation -74.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds