Wall clock time and date at job start Mon Mar 30 2020 01:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.53000 * 109.46770 * 270.21487 * 7 6 5 9 9 C 1.50707 * 109.47153 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99549 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99954 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99773 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46972 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46941 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47009 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00084 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99936 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00046 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47185 * 59.99534 * 19 17 15 21 21 H 1.48500 * 109.47204 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46894 * 299.99614 * 19 17 15 23 23 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 26 26 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 27 27 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 30 30 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 31 31 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 32 32 H 1.08997 * 109.47347 * 299.99738 * 8 7 6 33 33 H 1.09001 * 109.47565 * 60.00121 * 8 7 6 34 34 H 0.96997 * 119.99844 * 359.97438 * 11 9 8 35 35 H 1.08997 * 109.46945 * 299.99927 * 12 11 9 36 36 H 1.09000 * 109.47310 * 59.99464 * 12 11 9 37 37 H 1.09005 * 109.46608 * 299.99458 * 13 12 11 38 38 H 1.08995 * 109.46984 * 59.99845 * 13 12 11 39 39 H 1.08997 * 109.47012 * 300.00097 * 14 13 12 40 40 H 1.09000 * 109.47273 * 59.99654 * 14 13 12 41 41 H 0.96993 * 119.99890 * 179.97438 * 18 17 15 42 42 H 1.08001 * 119.99700 * 359.96970 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 6 5.3431 -4.2486 -1.4432 10 8 5.6470 -4.7733 -0.3929 11 7 5.6806 -4.8318 -2.6104 12 6 6.4131 -6.1005 -2.6105 13 6 6.6682 -6.5420 -4.0530 14 6 7.4338 -7.8667 -4.0530 15 6 7.6845 -8.3019 -5.4739 16 1 7.3334 -7.6942 -6.2947 17 6 8.3631 -9.4754 -5.7259 18 7 8.7921 -10.2147 -4.7263 19 14 8.6746 -10.0145 -7.4870 20 1 9.4761 -8.9790 -8.1873 21 1 9.4175 -11.3003 -7.4871 22 1 7.3770 -10.1931 -8.1868 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 -0.0001 -0.0091 30 1 5.2866 -2.3718 0.5133 31 1 3.7450 -3.2618 0.5132 32 1 3.6367 -3.0740 -1.9569 33 1 5.1782 -2.1841 -1.9569 34 1 5.4379 -4.4118 -3.4504 35 1 7.3652 -5.9703 -2.0961 36 1 5.8238 -6.8603 -2.0971 37 1 5.7158 -6.6723 -4.5669 38 1 7.2573 -5.7823 -4.5666 39 1 8.3861 -7.7360 -3.5392 40 1 6.8450 -8.6266 -3.5392 41 1 9.2691 -11.0404 -4.9035 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:24 Heat of formation + Delta-G solvation = -52.973616 kcal Electronic energy + Delta-G solvation = -19486.959625 eV Core-core repulsion = 16430.188748 eV Total energy + Delta-G solvation = -3056.770877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.95473 -39.26733 -35.52481 -34.48983 -33.30886 -32.58421 -31.31284 -29.97276 -27.25698 -26.83211 -24.79745 -22.86257 -22.21673 -20.76513 -20.56811 -19.75042 -17.04228 -16.61657 -16.37981 -16.08285 -15.40499 -15.35899 -14.97146 -14.46695 -14.35076 -14.10869 -13.68903 -13.38170 -13.06933 -13.03563 -12.62803 -12.51521 -12.27697 -11.90656 -11.76605 -11.71005 -11.45391 -11.17236 -11.02263 -10.88772 -10.73370 -10.62996 -9.88425 -9.86956 -9.38569 -9.14157 -9.02416 -8.81810 -8.76678 -8.37513 -6.02191 -4.05484 1.08633 1.13370 2.80126 3.31607 3.34502 3.36493 3.38855 3.56328 4.43478 4.47870 4.53052 4.63571 4.82743 4.89360 4.95631 5.03747 5.10014 5.25524 5.27375 5.33315 5.39190 5.44143 5.48968 5.66082 5.74281 5.77873 5.79292 5.90136 6.01857 6.16093 6.22072 6.31871 6.42309 6.49807 6.59498 6.77053 6.83377 7.00061 7.62614 7.72305 7.75430 7.96360 8.36581 8.41920 9.00957 9.58593 11.09028 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040038 B = 0.002182 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.168945 B =12831.547251 C =12994.081527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.075 4.075 7 C -0.066 4.066 8 C -0.134 4.134 9 C 0.506 3.494 10 O -0.546 6.546 11 N -0.728 5.728 12 C 0.116 3.884 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.117 4.117 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.398 0.602 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.472 23.192 8.563 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.133 4.133 5 C -0.140 4.140 6 C -0.075 4.075 7 C -0.103 4.103 8 C -0.174 4.174 9 C 0.292 3.708 10 O -0.424 6.424 11 N -0.378 5.378 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.135 4.135 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.232 0.768 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.144 22.620 9.362 28.273 hybrid contribution 0.163 -0.154 -1.451 1.468 sum -13.981 22.465 7.911 27.618 Atomic orbital electron populations 1.20800 0.91260 1.02753 1.02369 1.19926 0.96045 0.93183 0.99466 1.21014 0.94317 0.97422 1.01841 1.21128 0.94289 0.97984 0.99886 1.21087 0.99976 0.91973 1.01003 1.19941 0.93701 0.95082 0.98784 1.20340 1.00911 0.93455 0.95643 1.21649 1.01487 0.95399 0.98907 1.20651 0.79696 0.86507 0.83981 1.90700 1.54993 1.65372 1.31341 1.46249 1.58188 1.25154 1.08234 1.21639 0.95818 0.83574 0.99683 1.21886 1.00834 1.00837 0.92315 1.19028 0.95086 0.89970 0.97317 1.21166 1.36185 1.06502 0.92296 0.92703 1.25040 0.95720 0.96639 0.97118 1.69957 1.38327 1.14251 1.30727 0.86630 0.78345 0.77871 0.84972 1.20245 1.21268 1.20248 1.20980 0.93597 0.97649 1.01284 0.91141 0.91488 0.91638 0.86337 0.86136 0.86012 0.90077 0.90112 0.88935 0.88915 0.76806 0.91823 0.91834 0.92748 0.92752 0.96280 0.96288 0.92862 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.01 36.01 0.36 -0.33 16 2 C -0.09 -0.71 5.88 -104.62 -0.62 -1.33 16 3 C -0.13 -1.01 9.70 -39.58 -0.38 -1.40 16 4 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 5 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 6 C -0.08 -0.71 5.13 -104.63 -0.54 -1.24 16 7 C -0.07 -0.67 4.63 -27.88 -0.13 -0.80 16 8 C -0.13 -1.33 5.68 -27.88 -0.16 -1.49 16 9 C 0.51 7.20 7.83 -10.98 -0.09 7.11 16 10 O -0.55 -10.04 15.98 5.56 0.09 -9.95 16 11 N -0.73 -10.24 5.56 -60.29 -0.33 -10.57 16 12 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 13 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.12 -1.05 9.36 -39.58 -0.37 -1.42 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 26 H 0.06 0.33 8.09 -51.92 -0.42 -0.09 16 27 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 30 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 31 H 0.08 0.88 8.04 -51.93 -0.42 0.47 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.40 4.45 8.47 -40.82 -0.35 4.10 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -32.71 356.43 -9.63 -42.34 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.06 Total: -0.40 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -3.41 Total: -17.14 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.40 Total: -36.71 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.71 -9.63 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.632 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds