Wall clock time and date at job start Mon Mar 30 2020 01:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.53000 * 109.46770 * 270.21487 * 7 6 5 9 9 C 1.50707 * 109.47153 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99549 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99954 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99773 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46972 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46941 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47009 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00084 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99936 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00046 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47185 * 59.99534 * 19 17 15 21 21 H 1.48500 * 109.47204 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46894 * 299.99614 * 19 17 15 23 23 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 26 26 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 27 27 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 30 30 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 31 31 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 32 32 H 1.08997 * 109.47347 * 299.99738 * 8 7 6 33 33 H 1.09001 * 109.47565 * 60.00121 * 8 7 6 34 34 H 0.96997 * 119.99844 * 359.97438 * 11 9 8 35 35 H 1.08997 * 109.46945 * 299.99927 * 12 11 9 36 36 H 1.09000 * 109.47310 * 59.99464 * 12 11 9 37 37 H 1.09005 * 109.46608 * 299.99458 * 13 12 11 38 38 H 1.08995 * 109.46984 * 59.99845 * 13 12 11 39 39 H 1.08997 * 109.47012 * 300.00097 * 14 13 12 40 40 H 1.09000 * 109.47273 * 59.99654 * 14 13 12 41 41 H 0.96993 * 119.99890 * 179.97438 * 18 17 15 42 42 H 1.08001 * 119.99700 * 359.96970 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 6 5.3431 -4.2486 -1.4432 10 8 5.6470 -4.7733 -0.3929 11 7 5.6806 -4.8318 -2.6104 12 6 6.4131 -6.1005 -2.6105 13 6 6.6682 -6.5420 -4.0530 14 6 7.4338 -7.8667 -4.0530 15 6 7.6845 -8.3019 -5.4739 16 1 7.3334 -7.6942 -6.2947 17 6 8.3631 -9.4754 -5.7259 18 7 8.7921 -10.2147 -4.7263 19 14 8.6746 -10.0145 -7.4870 20 1 9.4761 -8.9790 -8.1873 21 1 9.4175 -11.3003 -7.4871 22 1 7.3770 -10.1931 -8.1868 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 -0.0001 -0.0091 30 1 5.2866 -2.3718 0.5133 31 1 3.7450 -3.2618 0.5132 32 1 3.6367 -3.0740 -1.9569 33 1 5.1782 -2.1841 -1.9569 34 1 5.4379 -4.4118 -3.4504 35 1 7.3652 -5.9703 -2.0961 36 1 5.8238 -6.8603 -2.0971 37 1 5.7158 -6.6723 -4.5669 38 1 7.2573 -5.7823 -4.5666 39 1 8.3861 -7.7360 -3.5392 40 1 6.8450 -8.6266 -3.5392 41 1 9.2691 -11.0404 -4.9035 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:23 Heat of formation + Delta-G solvation = -71.541244 kcal Electronic energy + Delta-G solvation = -19487.764778 eV Core-core repulsion = 16430.188748 eV Total energy + Delta-G solvation = -3057.576030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.90497 -40.15109 -37.02800 -35.30390 -35.17568 -33.26867 -32.96184 -30.85666 -28.61539 -27.71501 -25.97861 -24.43812 -22.86673 -22.31424 -21.45369 -20.91136 -18.55991 -18.03226 -17.23808 -17.03465 -16.83264 -16.41243 -16.36933 -15.66563 -15.60349 -14.87945 -14.55927 -14.28211 -14.21488 -13.91643 -13.84445 -13.66205 -13.41591 -13.37553 -12.99267 -12.71272 -12.56211 -12.49372 -12.39933 -12.16326 -11.81935 -11.71502 -11.67597 -11.59324 -11.26372 -10.83736 -10.55330 -10.08381 -9.66399 -9.44920 -8.19781 -6.31622 0.45471 0.51650 1.41469 1.44676 1.52549 1.65687 2.24242 2.42825 2.87651 3.13623 3.67277 3.90250 4.01349 4.07560 4.14831 4.19082 4.24590 4.30109 4.35828 4.52867 4.54616 4.62792 4.67756 4.78827 4.85579 4.92471 4.94711 5.01196 5.04706 5.13105 5.16247 5.26471 5.35072 5.45345 5.52923 5.61499 5.69693 5.72690 5.76610 5.83392 6.17202 6.21442 6.60262 6.85775 7.28745 7.37964 8.92069 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040038 B = 0.002182 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.168945 B =12831.547251 C =12994.081527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.120 4.120 5 C -0.134 4.134 6 C -0.084 4.084 7 C -0.061 4.061 8 C -0.120 4.120 9 C 0.504 3.496 10 O -0.592 6.592 11 N -0.717 5.717 12 C 0.128 3.872 13 C -0.101 4.101 14 C 0.023 3.977 15 C -0.542 4.542 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.265 1.265 23 C -0.130 4.130 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.416 0.584 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.068 0.932 39 H -0.009 1.009 40 H -0.009 1.009 41 H 0.263 0.737 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.711 25.313 6.832 30.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.138 4.138 5 C -0.152 4.152 6 C -0.084 4.084 7 C -0.098 4.098 8 C -0.160 4.160 9 C 0.292 3.708 10 O -0.473 6.473 11 N -0.369 5.369 12 C 0.004 3.996 13 C -0.139 4.139 14 C -0.015 4.015 15 C -0.580 4.580 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.148 4.148 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.147 0.853 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.253 0.747 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.407 24.780 7.603 30.153 hybrid contribution 0.531 -0.782 -0.846 1.268 sum -14.876 23.998 6.757 29.032 Atomic orbital electron populations 1.20837 0.89809 1.03435 1.03012 1.20228 0.97278 0.93047 0.98922 1.21329 0.94527 0.98177 1.01168 1.21408 0.94639 0.98483 0.99245 1.21261 1.00534 0.92142 1.01283 1.19875 0.93931 0.94704 0.99929 1.20232 1.00213 0.93775 0.95629 1.21635 1.02101 0.93010 0.99247 1.21436 0.78951 0.87416 0.82964 1.90686 1.56802 1.66840 1.32997 1.46041 1.57582 1.23839 1.09427 1.21210 0.95317 0.85006 0.98046 1.21593 1.00723 0.97919 0.93690 1.18952 0.94156 0.92468 0.95940 1.21655 1.35967 1.06852 0.93507 0.91482 1.26057 0.95450 0.96821 1.01946 1.70111 1.39276 1.14791 1.33354 0.85447 0.78682 0.77453 0.79144 1.18977 1.21198 1.18982 1.21134 0.93583 0.98360 1.01735 0.90430 0.91271 0.90552 0.84439 0.84267 0.85323 0.91322 0.91429 0.86655 0.86575 0.74668 0.93447 0.93457 0.91328 0.91336 0.99039 0.99048 0.92814 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 71.24 0.71 -0.44 16 2 C -0.09 -1.40 5.88 -19.87 -0.12 -1.52 16 3 C -0.13 -1.84 9.70 22.27 0.22 -1.63 16 4 C -0.12 -1.70 10.05 22.27 0.22 -1.47 16 5 C -0.13 -2.19 9.70 22.27 0.22 -1.97 16 6 C -0.08 -1.50 5.13 -19.87 -0.10 -1.60 16 7 C -0.06 -1.21 4.63 29.85 0.14 -1.07 16 8 C -0.12 -2.16 5.68 29.85 0.17 -1.99 16 9 C 0.50 13.97 7.83 87.66 0.69 14.65 16 10 O -0.59 -22.18 15.98 -3.02 -0.05 -22.22 16 11 N -0.72 -19.26 5.56 -463.05 -2.57 -21.83 16 12 C 0.13 4.57 5.67 86.38 0.49 5.06 16 13 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 14 C 0.02 1.18 4.97 29.85 0.15 1.33 16 15 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 16 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 17 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 18 N -0.94 -57.40 13.29 21.45 0.28 -57.11 16 19 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 C -0.13 -2.18 9.36 22.27 0.21 -1.98 16 24 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 26 H 0.08 0.59 8.09 -2.38 -0.02 0.57 16 27 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 28 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 29 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.07 1.52 8.04 -2.38 -0.02 1.50 16 31 H 0.07 1.50 8.04 -2.39 -0.02 1.48 16 32 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.42 8.21 8.47 -92.71 -0.79 7.42 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -71.77 356.43 3.73 -68.03 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.20 Total: 13.58 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 3.85 Total: -26.27 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -2.29 Total: -78.94 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -71.77 3.73 -68.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.509 kcal (2) G-P(sol) polarization free energy of solvation -71.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds