Wall clock time and date at job start Mon Mar 30 2020 01:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38244 * 119.99346 * 2 1 4 4 C 1.38238 * 119.99528 * 179.97438 * 3 2 1 5 5 C 1.38240 * 119.99993 * 0.26163 * 4 3 2 6 6 C 1.50692 * 119.99780 * 179.72263 * 5 4 3 7 7 C 1.53003 * 109.47321 * 89.99769 * 6 5 4 8 8 C 1.52997 * 109.47315 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47315 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47350 * 179.97438 * 9 8 7 11 11 O 1.21292 * 119.99925 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99835 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00072 * 359.97438 * 12 10 9 14 14 C 1.37097 * 119.99757 * 180.02562 * 12 10 9 15 15 H 1.08002 * 120.00148 * 24.39616 * 14 12 10 16 16 C 1.38947 * 120.00040 * 204.39537 * 14 12 10 17 17 N 1.31416 * 119.99915 * 12.65084 * 16 14 12 18 18 Si 1.86803 * 120.00014 * 192.65920 * 16 14 12 19 19 H 1.48501 * 109.47234 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47101 * 119.99687 * 18 16 14 21 21 H 1.48503 * 109.46669 * 239.99638 * 18 16 14 22 22 C 1.38234 * 119.99888 * 359.48328 * 5 4 3 23 23 C 1.38232 * 120.00407 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47405 * 90.00192 * 1 2 3 25 25 H 1.09004 * 109.46758 * 209.99724 * 1 2 3 26 26 H 1.08997 * 109.47584 * 329.99749 * 1 2 3 27 27 H 1.07994 * 120.00047 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.99801 * 179.97438 * 4 3 2 29 29 H 1.09005 * 109.47125 * 209.99915 * 6 5 4 30 30 H 1.09002 * 109.47431 * 329.99707 * 6 5 4 31 31 H 1.08999 * 109.46733 * 300.00005 * 7 6 5 32 32 H 1.09002 * 109.46919 * 59.99624 * 7 6 5 33 33 H 1.09005 * 109.47231 * 300.00207 * 8 7 6 34 34 H 1.09002 * 109.47330 * 60.00003 * 8 7 6 35 35 H 1.08999 * 109.46733 * 300.00132 * 9 8 7 36 36 H 1.09002 * 109.46919 * 59.99751 * 9 8 7 37 37 H 1.09000 * 109.47400 * 85.86302 * 13 12 10 38 38 H 1.09003 * 109.47113 * 205.86525 * 13 12 10 39 39 H 1.09007 * 109.46941 * 325.86196 * 13 12 10 40 40 H 0.96996 * 119.99632 * 179.97438 * 17 16 14 41 41 H 1.07999 * 119.99717 * 180.25088 * 22 5 4 42 42 H 1.07998 * 120.00017 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0002 -0.0044 6 6 5.7786 0.0003 -0.0101 7 6 6.2942 -0.0024 1.4304 8 6 7.8241 -0.0029 1.4246 9 6 8.3397 -0.0062 2.8652 10 6 9.8467 -0.0073 2.8594 11 8 10.4491 -0.0052 1.8067 12 7 10.5249 -0.0108 4.0241 13 6 9.7973 -0.0128 5.2955 14 6 11.8959 -0.0113 4.0188 15 1 12.4328 0.3772 3.1660 16 6 12.5946 -0.5115 5.1107 17 7 11.9647 -1.2051 6.0322 18 14 14.4293 -0.1979 5.2689 19 1 14.8966 0.6025 4.1085 20 1 14.6976 0.5474 6.5250 21 1 15.1523 -1.4947 5.2986 22 6 3.5806 -1.1970 0.0009 23 6 2.1983 -1.1971 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6580 2.1325 -0.0004 28 1 4.1204 2.1327 0.0001 29 1 6.1401 -0.8887 -0.5271 30 1 6.1400 0.8913 -0.5237 31 1 5.9327 0.8866 1.9473 32 1 5.9328 -0.8933 1.9440 33 1 8.1852 -0.8921 0.9078 34 1 8.1858 0.8879 0.9109 35 1 7.9786 0.8828 3.3823 36 1 7.9779 -0.8972 3.3784 37 1 9.5512 -1.0381 5.5718 38 1 10.4199 0.4331 6.0712 39 1 8.8792 0.5653 5.1896 40 1 12.4526 -1.5546 6.7942 41 1 4.1207 -2.1322 0.0012 42 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072072142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:34 Heat of formation + Delta-G solvation = -35.727830 kcal Electronic energy + Delta-G solvation = -20023.049067 eV Core-core repulsion = 16967.026024 eV Total energy + Delta-G solvation = -3056.023044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.60881 -38.44634 -35.69786 -34.57989 -32.98740 -31.56399 -31.03478 -29.91413 -27.01976 -26.04306 -24.58731 -23.22839 -22.83143 -21.09966 -20.54795 -18.58978 -16.80052 -16.16159 -15.90415 -15.80795 -15.19239 -15.10592 -14.54419 -14.08606 -13.97121 -13.87918 -13.52230 -13.18932 -13.04060 -12.72764 -12.33244 -12.25547 -11.86728 -11.65947 -11.48258 -11.35521 -11.22648 -11.13803 -10.92547 -10.78622 -10.68395 -10.63417 -10.27859 -10.25581 -10.11594 -9.03708 -8.97076 -8.56917 -8.28713 -7.59599 -6.27574 -3.83459 1.21938 1.29028 3.17778 3.27594 3.34848 3.62130 3.98717 4.18384 4.62310 4.65637 4.77293 4.90204 4.99803 5.00075 5.16335 5.24860 5.31192 5.32776 5.37933 5.50015 5.53551 5.62021 5.69295 5.81362 5.92944 5.93792 6.00517 6.08077 6.15066 6.24718 6.27629 6.33231 6.45341 6.49558 6.56661 6.68790 6.79663 6.90506 6.91510 7.23778 7.61288 8.21267 8.55321 9.25323 9.49753 10.06965 10.77725 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.048909 B = 0.002517 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.351721 B =11121.994498 C =11326.732278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.079 4.079 6 C -0.083 4.083 7 C -0.112 4.112 8 C -0.099 4.099 9 C -0.129 4.129 10 C 0.447 3.553 11 O -0.592 6.592 12 N -0.452 5.452 13 C 0.113 3.887 14 C -0.304 4.304 15 H 0.097 0.903 16 C 0.028 3.972 17 N -0.884 5.884 18 Si 0.925 3.075 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.115 4.115 23 C -0.119 4.119 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.266 0.734 41 H 0.122 0.878 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.652 2.308 -7.480 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.133 4.133 5 C -0.079 4.079 6 C -0.120 4.120 7 C -0.150 4.150 8 C -0.136 4.136 9 C -0.170 4.170 10 C 0.235 3.765 11 O -0.477 6.477 12 N -0.171 5.171 13 C -0.031 4.031 14 C -0.432 4.432 15 H 0.115 0.885 16 C -0.175 4.175 17 N -0.524 5.524 18 Si 0.752 3.248 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.133 4.133 23 C -0.137 4.137 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.140 0.860 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.287 2.220 -7.787 21.844 hybrid contribution 0.840 -0.015 0.477 0.966 sum -19.447 2.205 -7.309 20.892 Atomic orbital electron populations 1.20768 0.91459 1.02616 1.02094 1.19892 0.95919 0.93327 1.00748 1.21008 0.94222 0.97383 1.01161 1.21075 0.94050 0.97795 1.00374 1.20016 0.96126 0.93052 0.98694 1.20663 0.90043 1.03162 0.98141 1.21609 0.96093 1.02061 0.95189 1.21280 0.92914 1.03219 0.96234 1.21535 0.94961 1.02468 0.98009 1.20199 0.88801 0.83123 0.84349 1.90496 1.70533 1.55728 1.30965 1.43623 1.06232 1.63132 1.04109 1.21448 0.93706 1.00464 0.87456 1.19683 0.80552 1.38597 1.04390 0.88541 1.25349 1.00246 0.95320 0.96582 1.70006 1.36667 1.33546 1.12202 0.85885 0.82531 0.78182 0.78235 1.19265 1.20717 1.20795 1.21082 0.94058 0.97827 1.00297 1.21008 0.94226 0.97396 1.01116 0.91418 0.91692 0.91699 0.86333 0.86053 0.90883 0.90915 0.92087 0.92027 0.91527 0.91605 0.90797 0.90565 0.93143 0.90875 0.95608 0.92411 0.86020 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.10 -0.93 5.88 -104.62 -0.62 -1.55 16 3 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 4 C -0.11 -1.21 9.70 -39.58 -0.38 -1.59 16 5 C -0.08 -0.88 5.13 -104.63 -0.54 -1.42 16 6 C -0.08 -0.94 5.34 -27.89 -0.15 -1.09 16 7 C -0.11 -1.42 5.20 -26.73 -0.14 -1.56 16 8 C -0.10 -1.60 4.50 -26.73 -0.12 -1.72 16 9 C -0.13 -2.39 4.31 -27.88 -0.12 -2.51 16 10 C 0.45 11.15 7.63 -10.99 -0.08 11.07 16 11 O -0.59 -16.77 15.70 5.55 0.09 -16.68 16 12 N -0.45 -11.94 3.01 -122.19 -0.37 -12.31 16 13 C 0.11 2.58 8.44 59.84 0.51 3.09 16 14 C -0.30 -8.72 9.24 -14.93 -0.14 -8.86 16 15 H 0.10 2.90 7.45 -52.49 -0.39 2.51 16 16 C 0.03 0.75 5.04 -17.47 -0.09 0.66 16 17 N -0.88 -24.15 10.84 55.50 0.60 -23.55 16 18 Si 0.92 21.17 29.57 -169.99 -5.03 16.15 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.11 -1.22 9.70 -39.58 -0.38 -1.60 16 23 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 26 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 27 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.07 1.23 7.41 -51.93 -0.38 0.85 16 36 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 37 H 0.05 1.18 7.83 -51.93 -0.41 0.77 16 38 H 0.07 1.76 6.80 -51.93 -0.35 1.41 16 39 H 0.03 0.48 6.61 -51.92 -0.34 0.14 16 40 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -32.00 347.69 -9.04 -41.04 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.91 Total: 0.68 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -2.66 Total: -10.57 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.23 Total: -35.86 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.09 Total: -16.68 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.00 -9.04 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072072142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.312 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds