Wall clock time and date at job start Mon Mar 30 2020 01:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38244 * 119.99346 * 2 1 4 4 C 1.38238 * 119.99528 * 179.97438 * 3 2 1 5 5 C 1.38240 * 119.99993 * 0.26163 * 4 3 2 6 6 C 1.50692 * 119.99780 * 179.72263 * 5 4 3 7 7 C 1.53003 * 109.47321 * 89.99769 * 6 5 4 8 8 C 1.52997 * 109.47315 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47315 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47350 * 179.97438 * 9 8 7 11 11 O 1.21292 * 119.99925 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99835 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00072 * 359.97438 * 12 10 9 14 14 C 1.37097 * 119.99757 * 180.02562 * 12 10 9 15 15 H 1.08002 * 120.00148 * 24.39616 * 14 12 10 16 16 C 1.38947 * 120.00040 * 204.39537 * 14 12 10 17 17 N 1.31416 * 119.99915 * 12.65084 * 16 14 12 18 18 Si 1.86803 * 120.00014 * 192.65920 * 16 14 12 19 19 H 1.48501 * 109.47234 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47101 * 119.99687 * 18 16 14 21 21 H 1.48503 * 109.46669 * 239.99638 * 18 16 14 22 22 C 1.38234 * 119.99888 * 359.48328 * 5 4 3 23 23 C 1.38232 * 120.00407 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47405 * 90.00192 * 1 2 3 25 25 H 1.09004 * 109.46758 * 209.99724 * 1 2 3 26 26 H 1.08997 * 109.47584 * 329.99749 * 1 2 3 27 27 H 1.07994 * 120.00047 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.99801 * 179.97438 * 4 3 2 29 29 H 1.09005 * 109.47125 * 209.99915 * 6 5 4 30 30 H 1.09002 * 109.47431 * 329.99707 * 6 5 4 31 31 H 1.08999 * 109.46733 * 300.00005 * 7 6 5 32 32 H 1.09002 * 109.46919 * 59.99624 * 7 6 5 33 33 H 1.09005 * 109.47231 * 300.00207 * 8 7 6 34 34 H 1.09002 * 109.47330 * 60.00003 * 8 7 6 35 35 H 1.08999 * 109.46733 * 300.00132 * 9 8 7 36 36 H 1.09002 * 109.46919 * 59.99751 * 9 8 7 37 37 H 1.09000 * 109.47400 * 85.86302 * 13 12 10 38 38 H 1.09003 * 109.47113 * 205.86525 * 13 12 10 39 39 H 1.09007 * 109.46941 * 325.86196 * 13 12 10 40 40 H 0.96996 * 119.99632 * 179.97438 * 17 16 14 41 41 H 1.07999 * 119.99717 * 180.25088 * 22 5 4 42 42 H 1.07998 * 120.00017 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0002 -0.0044 6 6 5.7786 0.0003 -0.0101 7 6 6.2942 -0.0024 1.4304 8 6 7.8241 -0.0029 1.4246 9 6 8.3397 -0.0062 2.8652 10 6 9.8467 -0.0073 2.8594 11 8 10.4491 -0.0052 1.8067 12 7 10.5249 -0.0108 4.0241 13 6 9.7973 -0.0128 5.2955 14 6 11.8959 -0.0113 4.0188 15 1 12.4328 0.3772 3.1660 16 6 12.5946 -0.5115 5.1107 17 7 11.9647 -1.2051 6.0322 18 14 14.4293 -0.1979 5.2689 19 1 14.8966 0.6025 4.1085 20 1 14.6976 0.5474 6.5250 21 1 15.1523 -1.4947 5.2986 22 6 3.5806 -1.1970 0.0009 23 6 2.1983 -1.1971 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6580 2.1325 -0.0004 28 1 4.1204 2.1327 0.0001 29 1 6.1401 -0.8887 -0.5271 30 1 6.1400 0.8913 -0.5237 31 1 5.9327 0.8866 1.9473 32 1 5.9328 -0.8933 1.9440 33 1 8.1852 -0.8921 0.9078 34 1 8.1858 0.8879 0.9109 35 1 7.9786 0.8828 3.3823 36 1 7.9779 -0.8972 3.3784 37 1 9.5512 -1.0381 5.5718 38 1 10.4199 0.4331 6.0712 39 1 8.8792 0.5653 5.1896 40 1 12.4526 -1.5546 6.7942 41 1 4.1207 -2.1322 0.0012 42 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072072142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:33 Heat of formation + Delta-G solvation = -51.866368 kcal Electronic energy + Delta-G solvation = -20023.748887 eV Core-core repulsion = 16967.026024 eV Total energy + Delta-G solvation = -3056.722863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.47261 -40.24774 -36.98869 -36.36711 -34.09482 -33.54164 -31.75758 -31.00293 -28.45458 -27.58483 -26.25173 -24.49222 -23.55867 -22.26670 -21.38178 -20.41550 -18.87479 -17.75534 -16.97317 -16.90471 -16.52460 -16.27441 -15.95698 -15.85082 -15.33926 -14.71934 -14.42678 -14.25079 -14.06939 -14.00608 -13.63490 -13.39305 -13.25128 -13.15040 -12.93641 -12.84924 -12.64991 -12.40554 -12.37590 -12.11970 -12.10719 -11.90454 -11.73964 -11.59727 -11.38755 -11.01062 -10.32037 -9.77845 -9.65859 -9.30323 -8.34582 -5.99631 0.47105 0.54868 1.35266 1.39601 1.53975 2.05606 2.28089 2.86740 3.08118 3.12861 3.82296 3.93616 4.06044 4.08877 4.12140 4.21009 4.22554 4.36651 4.53627 4.61428 4.64977 4.67003 4.73356 4.86464 4.86639 4.88177 4.95939 4.98830 5.04306 5.05013 5.21199 5.24783 5.36351 5.36447 5.39520 5.44128 5.52715 5.57908 5.75469 5.81704 6.11670 6.19488 6.49778 7.17692 7.49198 8.06048 8.68943 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.048909 B = 0.002517 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.351721 B =11121.994498 C =11326.732278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.105 4.105 3 C -0.128 4.128 4 C -0.126 4.126 5 C -0.094 4.094 6 C -0.078 4.078 7 C -0.099 4.099 8 C -0.091 4.091 9 C -0.118 4.118 10 C 0.433 3.567 11 O -0.637 6.637 12 N -0.470 5.470 13 C 0.122 3.878 14 C -0.344 4.344 15 H 0.068 0.932 16 C -0.006 4.006 17 N -0.898 5.898 18 Si 0.990 3.010 19 H -0.274 1.274 20 H -0.264 1.264 21 H -0.276 1.276 22 C -0.127 4.127 23 C -0.129 4.129 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.273 0.727 41 H 0.127 0.873 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.369 2.569 -6.742 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.105 4.105 3 C -0.146 4.146 4 C -0.144 4.144 5 C -0.094 4.094 6 C -0.116 4.116 7 C -0.136 4.136 8 C -0.129 4.129 9 C -0.158 4.158 10 C 0.224 3.776 11 O -0.525 6.525 12 N -0.189 5.189 13 C -0.021 4.021 14 C -0.473 4.473 15 H 0.086 0.914 16 C -0.207 4.207 17 N -0.537 5.537 18 Si 0.813 3.187 19 H -0.199 1.199 20 H -0.188 1.188 21 H -0.201 1.201 22 C -0.145 4.145 23 C -0.147 4.147 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.145 0.855 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.035 2.477 -7.020 23.259 hybrid contribution 1.335 -0.119 0.231 1.360 sum -20.700 2.358 -6.790 21.913 Atomic orbital electron populations 1.20814 0.89593 1.03492 1.02920 1.20270 0.97438 0.93111 0.99675 1.21293 0.94098 0.98417 1.00806 1.21272 0.94703 0.97946 1.00472 1.20015 0.95719 0.93649 1.00039 1.20577 0.90614 1.03147 0.97234 1.21474 0.92971 1.02800 0.96355 1.21212 0.95470 1.01766 0.94492 1.21536 0.89850 1.04398 0.99975 1.21348 0.91491 0.81499 0.83309 1.90455 1.72215 1.57357 1.32468 1.43939 1.05961 1.63248 1.05721 1.21421 0.94639 1.00528 0.85529 1.19627 0.82215 1.40822 1.04597 0.91407 1.26123 1.04504 0.94416 0.95682 1.70070 1.38284 1.33045 1.12301 0.84933 0.77065 0.78207 0.78448 1.19902 1.18850 1.20118 1.21266 0.94736 0.97970 1.00566 1.21281 0.94078 0.98445 1.00867 0.90519 0.90888 0.90811 0.84559 0.85279 0.91103 0.90843 0.91058 0.91442 0.93353 0.92859 0.88106 0.88902 0.93958 0.92576 0.91267 0.91723 0.85506 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.10 -1.77 5.88 -19.86 -0.12 -1.89 16 3 C -0.13 -2.24 9.70 22.27 0.22 -2.03 16 4 C -0.13 -2.47 9.70 22.27 0.22 -2.26 16 5 C -0.09 -1.99 5.13 -19.87 -0.10 -2.10 16 6 C -0.08 -1.72 5.34 29.85 0.16 -1.56 16 7 C -0.10 -2.34 5.20 30.59 0.16 -2.18 16 8 C -0.09 -2.92 4.50 30.59 0.14 -2.78 16 9 C -0.12 -4.20 4.31 29.85 0.13 -4.07 16 10 C 0.43 21.88 7.63 87.66 0.67 22.55 16 11 O -0.64 -37.35 15.70 -3.07 -0.05 -37.40 16 12 N -0.47 -25.10 3.01 -658.89 -1.98 -27.09 16 13 C 0.12 5.46 8.44 127.77 1.08 6.54 16 14 C -0.34 -20.27 9.24 84.04 0.78 -19.49 16 15 H 0.07 4.28 7.45 -2.91 -0.02 4.25 16 16 C -0.01 -0.32 5.04 84.92 0.43 0.11 16 17 N -0.90 -48.74 10.84 21.66 0.23 -48.51 16 18 Si 0.99 43.48 29.57 68.60 2.03 45.50 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 23 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 24 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 26 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 28 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.07 1.55 8.09 -2.38 -0.02 1.53 16 30 H 0.07 1.57 8.09 -2.39 -0.02 1.55 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.70 8.10 -2.38 -0.02 1.68 16 34 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.10 3.07 7.41 -2.39 -0.02 3.06 16 36 H 0.09 3.04 8.11 -2.39 -0.02 3.02 16 37 H 0.04 1.94 7.83 -2.39 -0.02 1.92 16 38 H 0.06 2.67 6.80 -2.39 -0.02 2.66 16 39 H 0.07 2.44 6.61 -2.38 -0.02 2.43 16 40 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -70.27 347.69 6.10 -64.17 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.97 Total: 17.42 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 4.90 Total: -14.10 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -1.75 Total: -75.60 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.05 Total: -37.40 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.27 6.10 -64.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072072142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.308 kcal (2) G-P(sol) polarization free energy of solvation -70.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds