Wall clock time and date at job start Mon Mar 30 2020 01:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99717 * 2 1 4 4 H 1.48502 * 109.46826 * 239.99605 * 3 2 1 5 5 H 1.48491 * 109.47296 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47209 * 119.99926 * 3 2 1 7 7 C 1.37875 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99857 * 359.72866 * 7 2 1 10 10 N 1.46901 * 109.47025 * 174.99821 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.69388 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 O 1.42900 * 109.56966 * 177.58994 * 13 12 11 15 15 C 1.42901 * 114.00516 * 90.28388 * 14 13 12 16 16 C 1.50694 * 109.47660 * 179.97438 * 15 14 13 17 17 C 1.38236 * 120.00014 * 269.72741 * 16 15 14 18 18 C 1.38233 * 119.99763 * 179.76659 * 17 16 15 19 19 C 1.38237 * 120.00162 * 0.50261 * 18 17 16 20 20 C 1.38236 * 119.99760 * 359.75301 * 19 18 17 21 21 C 1.38230 * 120.00037 * 359.97438 * 20 19 18 22 22 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 23 23 C 1.46846 * 111.00467 * 64.90491 * 10 9 7 24 24 H 0.97005 * 120.00330 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47380 * 294.99570 * 9 7 2 26 26 H 1.09000 * 109.47417 * 54.99673 * 9 7 2 27 27 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 28 28 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 29 29 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 30 30 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 31 31 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 32 32 H 1.08999 * 109.46592 * 300.00522 * 15 14 13 33 33 H 1.09004 * 109.46716 * 59.99203 * 15 14 13 34 34 H 1.07997 * 120.00271 * 359.97438 * 17 16 15 35 35 H 1.08005 * 120.00097 * 180.23428 * 18 17 16 36 36 H 1.08000 * 120.00146 * 179.72735 * 19 18 17 37 37 H 1.08005 * 119.99966 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.00122 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.50148 * 182.40235 * 22 13 12 40 40 H 1.08994 * 109.53641 * 62.30127 * 22 13 12 41 41 H 1.09006 * 109.45826 * 294.17926 * 23 10 9 42 42 H 1.09003 * 109.46067 * 54.15415 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0073 10 7 2.2006 -3.6133 -0.1142 11 6 2.9779 -3.5093 -1.3557 12 6 3.8489 -4.7570 -1.5200 13 6 4.7877 -4.8800 -0.3166 14 8 5.5648 -6.0732 -0.4359 15 6 6.8024 -5.8943 -1.1276 16 6 7.5357 -7.2091 -1.1938 17 6 8.4196 -7.5589 -0.1901 18 6 9.0885 -8.7672 -0.2484 19 6 8.8816 -9.6210 -1.3156 20 6 8.0017 -9.2689 -2.3220 21 6 7.3284 -8.0632 -2.2608 22 6 3.9548 -4.9380 0.9669 23 6 3.0808 -3.6851 1.0590 24 1 -0.4851 0.8401 -0.0004 25 1 0.6971 -2.5940 0.9413 26 1 0.5554 -2.5214 -0.8316 27 1 2.2984 -3.4265 -2.2039 28 1 3.6142 -2.6253 -1.3128 29 1 4.4373 -4.6722 -2.4335 30 1 3.2125 -5.6400 -1.5768 31 1 5.4507 -4.0155 -0.2819 32 1 6.6053 -5.5364 -2.1381 33 1 7.4132 -5.1643 -0.5964 34 1 8.5849 -6.8897 0.6413 35 1 9.7763 -9.0422 0.5376 36 1 9.4076 -10.5631 -1.3634 37 1 7.8402 -9.9358 -3.1560 38 1 6.6413 -7.7878 -3.0473 39 1 4.6190 -4.9826 1.8300 40 1 3.3201 -5.8239 0.9498 41 1 3.7166 -2.8002 1.0906 42 1 2.4759 -3.7302 1.9646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073106423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:49 Heat of formation + Delta-G solvation = -28.506802 kcal Electronic energy + Delta-G solvation = -20774.202728 eV Core-core repulsion = 17718.492812 eV Total energy + Delta-G solvation = -3055.709916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.59572 -38.71260 -36.75336 -33.27950 -32.15790 -31.08029 -30.87925 -30.27735 -26.72180 -25.87747 -23.51853 -22.77538 -22.48993 -21.43505 -21.17343 -19.23866 -17.08707 -16.59851 -16.41135 -15.67383 -15.57917 -15.05508 -14.44445 -14.34746 -14.18094 -13.83312 -13.57910 -13.25898 -12.97555 -12.68689 -12.66662 -12.34609 -11.90736 -11.77720 -11.28481 -11.15174 -11.07645 -10.97857 -10.75612 -10.52563 -10.41769 -10.37047 -10.08613 -9.82642 -9.57657 -9.19174 -9.09303 -8.99092 -8.44782 -7.17901 -6.04058 -4.13857 1.09924 1.22614 3.26326 3.31819 3.33500 3.44318 4.04313 4.38380 4.65000 4.70620 4.82414 4.93455 5.01446 5.11169 5.22590 5.25677 5.27879 5.28765 5.40797 5.48694 5.52474 5.79097 5.80952 5.86395 6.02879 6.04468 6.11802 6.25581 6.30822 6.31843 6.36720 6.45288 6.52252 6.61680 6.74974 6.80088 6.85431 7.28808 7.39924 7.50896 7.88312 8.05641 8.27947 8.30617 8.96515 9.52990 11.00715 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037135 B = 0.003102 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.819557 B = 9025.185342 C = 9183.124529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.187 3.813 10 N -0.542 5.542 11 C 0.068 3.932 12 C -0.136 4.136 13 C 0.091 3.909 14 O -0.377 6.377 15 C 0.101 3.899 16 C -0.084 4.084 17 C -0.100 4.100 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.125 4.125 21 C -0.099 4.099 22 C -0.110 4.110 23 C 0.066 3.934 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.428 -15.397 -2.683 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.061 3.939 10 N -0.267 5.267 11 C -0.061 4.061 12 C -0.174 4.174 13 C 0.034 3.966 14 O -0.297 6.297 15 C 0.024 3.976 16 C -0.084 4.084 17 C -0.118 4.118 18 C -0.143 4.143 19 C -0.137 4.137 20 C -0.143 4.143 21 C -0.117 4.117 22 C -0.148 4.148 23 C -0.063 4.063 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.055 0.945 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.915 -15.879 -2.627 22.635 hybrid contribution 0.992 2.058 -0.096 2.286 sum 16.908 -13.822 -2.723 22.007 Atomic orbital electron populations 1.69933 1.06003 1.26962 1.49980 1.24964 0.94770 0.99115 0.94907 0.86713 0.79711 0.83346 0.78593 1.20287 1.21153 1.20266 1.21716 0.93244 0.92174 1.51887 0.92636 1.19744 0.90886 0.85356 0.97865 1.62456 1.17272 1.46351 1.00585 1.21786 0.95664 0.94639 0.94019 1.22126 0.98058 1.00346 0.96861 1.22243 0.91788 0.86230 0.96352 1.87981 1.30831 1.33918 1.76942 1.21305 0.85782 0.93532 0.96966 1.19697 0.97141 0.96302 0.95277 1.21096 0.96146 0.96785 0.97790 1.21142 1.00185 0.94468 0.98505 1.21177 0.98530 0.99503 0.94502 1.21150 0.97238 0.96780 0.99093 1.21108 0.98655 0.93861 0.98078 1.21696 0.97681 1.00182 0.95242 1.21835 0.94748 0.94809 0.94924 0.92718 0.95397 0.94670 0.91344 0.94385 0.92602 0.90891 0.92691 0.92560 0.92709 0.85939 0.86020 0.86161 0.85988 0.85857 0.92000 0.90861 0.94523 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.55 -15.04 7.72 -34.44 -0.27 -15.31 16 8 H 0.06 1.50 5.86 -52.49 -0.31 1.19 16 9 C 0.19 4.82 5.12 -4.98 -0.03 4.79 16 10 N -0.54 -11.72 4.86 -236.11 -1.15 -12.87 16 11 C 0.07 1.33 5.03 -3.83 -0.02 1.31 16 12 C -0.14 -2.19 5.72 -26.65 -0.15 -2.34 16 13 C 0.09 1.42 2.68 -26.61 -0.07 1.35 16 14 O -0.38 -5.63 9.98 -35.23 -0.35 -5.98 16 15 C 0.10 1.22 5.88 36.00 0.21 1.43 16 16 C -0.08 -0.97 5.51 -104.63 -0.58 -1.55 16 17 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 18 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 19 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 20 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 21 C -0.10 -1.06 9.70 -39.59 -0.38 -1.44 16 22 C -0.11 -1.79 5.75 -26.65 -0.15 -1.94 16 23 C 0.07 1.27 5.12 -3.84 -0.02 1.25 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 28 H 0.04 0.80 6.73 -51.93 -0.35 0.45 16 29 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.84 7.79 -51.93 -0.40 0.44 16 32 H 0.06 0.64 7.91 -51.93 -0.41 0.23 16 33 H 0.05 0.61 8.03 -51.93 -0.42 0.19 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 36 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.04 0.76 6.86 -51.93 -0.36 0.40 16 42 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -29.77 339.08 -10.66 -40.43 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.86 Total: -0.87 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -3.13 Total: -16.71 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.41 Total: -38.25 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.35 Total: -5.98 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.77 -10.66 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073106423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.927 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds