Wall clock time and date at job start Mon Mar 30 2020 01:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99717 * 2 1 4 4 H 1.48502 * 109.46826 * 239.99605 * 3 2 1 5 5 H 1.48491 * 109.47296 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47209 * 119.99926 * 3 2 1 7 7 C 1.37875 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99857 * 359.72866 * 7 2 1 10 10 N 1.46901 * 109.47025 * 174.99821 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.69388 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 O 1.42900 * 109.56966 * 177.58994 * 13 12 11 15 15 C 1.42901 * 114.00516 * 90.28388 * 14 13 12 16 16 C 1.50694 * 109.47660 * 179.97438 * 15 14 13 17 17 C 1.38236 * 120.00014 * 269.72741 * 16 15 14 18 18 C 1.38233 * 119.99763 * 179.76659 * 17 16 15 19 19 C 1.38237 * 120.00162 * 0.50261 * 18 17 16 20 20 C 1.38236 * 119.99760 * 359.75301 * 19 18 17 21 21 C 1.38230 * 120.00037 * 359.97438 * 20 19 18 22 22 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 23 23 C 1.46846 * 111.00467 * 64.90491 * 10 9 7 24 24 H 0.97005 * 120.00330 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47380 * 294.99570 * 9 7 2 26 26 H 1.09000 * 109.47417 * 54.99673 * 9 7 2 27 27 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 28 28 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 29 29 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 30 30 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 31 31 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 32 32 H 1.08999 * 109.46592 * 300.00522 * 15 14 13 33 33 H 1.09004 * 109.46716 * 59.99203 * 15 14 13 34 34 H 1.07997 * 120.00271 * 359.97438 * 17 16 15 35 35 H 1.08005 * 120.00097 * 180.23428 * 18 17 16 36 36 H 1.08000 * 120.00146 * 179.72735 * 19 18 17 37 37 H 1.08005 * 119.99966 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.00122 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.50148 * 182.40235 * 22 13 12 40 40 H 1.08994 * 109.53641 * 62.30127 * 22 13 12 41 41 H 1.09006 * 109.45826 * 294.17926 * 23 10 9 42 42 H 1.09003 * 109.46067 * 54.15415 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0073 10 7 2.2006 -3.6133 -0.1142 11 6 2.9779 -3.5093 -1.3557 12 6 3.8489 -4.7570 -1.5200 13 6 4.7877 -4.8800 -0.3166 14 8 5.5648 -6.0732 -0.4359 15 6 6.8024 -5.8943 -1.1276 16 6 7.5357 -7.2091 -1.1938 17 6 8.4196 -7.5589 -0.1901 18 6 9.0885 -8.7672 -0.2484 19 6 8.8816 -9.6210 -1.3156 20 6 8.0017 -9.2689 -2.3220 21 6 7.3284 -8.0632 -2.2608 22 6 3.9548 -4.9380 0.9669 23 6 3.0808 -3.6851 1.0590 24 1 -0.4851 0.8401 -0.0004 25 1 0.6971 -2.5940 0.9413 26 1 0.5554 -2.5214 -0.8316 27 1 2.2984 -3.4265 -2.2039 28 1 3.6142 -2.6253 -1.3128 29 1 4.4373 -4.6722 -2.4335 30 1 3.2125 -5.6400 -1.5768 31 1 5.4507 -4.0155 -0.2819 32 1 6.6053 -5.5364 -2.1381 33 1 7.4132 -5.1643 -0.5964 34 1 8.5849 -6.8897 0.6413 35 1 9.7763 -9.0422 0.5376 36 1 9.4076 -10.5631 -1.3634 37 1 7.8402 -9.9358 -3.1560 38 1 6.6413 -7.7878 -3.0473 39 1 4.6190 -4.9826 1.8300 40 1 3.3201 -5.8239 0.9498 41 1 3.7166 -2.8002 1.0906 42 1 2.4759 -3.7302 1.9646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073106423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:49 Heat of formation + Delta-G solvation = -45.414470 kcal Electronic energy + Delta-G solvation = -20774.935899 eV Core-core repulsion = 17718.492812 eV Total energy + Delta-G solvation = -3056.443088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56814 -39.88925 -38.11056 -35.11306 -33.48646 -32.18534 -31.79015 -31.74385 -28.51110 -26.98389 -25.28167 -23.98269 -23.45091 -22.85781 -22.22011 -20.77949 -18.52592 -17.87229 -17.66519 -16.91292 -16.58935 -16.40910 -15.86899 -15.84208 -15.36399 -15.27144 -14.74752 -14.29469 -14.19346 -14.00839 -13.93696 -13.59299 -13.39584 -13.13050 -12.89852 -12.84179 -12.39432 -12.31650 -12.07231 -12.05046 -11.92312 -11.82185 -11.71450 -11.51124 -11.31373 -10.61376 -10.39714 -9.81091 -9.74354 -9.03538 -8.15798 -6.36500 0.35359 0.51200 1.36757 1.38072 1.46308 2.36442 2.56529 3.08415 3.11033 3.36318 3.79963 3.86546 3.95551 3.97499 4.16135 4.20808 4.30926 4.31968 4.36564 4.44677 4.53782 4.65826 4.66939 4.70521 4.77608 4.88868 4.90354 5.02474 5.08900 5.10542 5.17040 5.23636 5.30212 5.31487 5.36376 5.56376 5.61912 5.69271 5.72961 6.03976 6.10997 6.24584 6.27947 6.54236 6.84357 7.35251 8.86265 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037135 B = 0.003102 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.819557 B = 9025.185342 C = 9183.124529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.058 0.942 9 C 0.200 3.800 10 N -0.546 5.546 11 C 0.070 3.930 12 C -0.124 4.124 13 C 0.097 3.903 14 O -0.386 6.386 15 C 0.097 3.903 16 C -0.106 4.106 17 C -0.114 4.114 18 C -0.130 4.130 19 C -0.121 4.121 20 C -0.131 4.131 21 C -0.115 4.115 22 C -0.101 4.101 23 C 0.068 3.932 24 H 0.266 0.734 25 H 0.004 0.996 26 H 0.007 0.993 27 H 0.058 0.942 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.129 0.871 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.890 -16.231 -2.854 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.598 4.598 8 H 0.076 0.924 9 C 0.073 3.927 10 N -0.270 5.270 11 C -0.059 4.059 12 C -0.162 4.162 13 C 0.039 3.961 14 O -0.306 6.306 15 C 0.021 3.979 16 C -0.106 4.106 17 C -0.133 4.133 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.149 4.149 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.061 4.061 24 H 0.074 0.926 25 H 0.022 0.978 26 H 0.025 0.975 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.042 0.958 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.400 -16.734 -2.801 25.029 hybrid contribution 0.252 2.216 -0.055 2.231 sum 18.652 -14.518 -2.856 23.808 Atomic orbital electron populations 1.70063 1.07636 1.27999 1.50916 1.25842 0.95619 1.02922 0.94459 0.85612 0.78428 0.78692 0.79008 1.19394 1.20737 1.19398 1.21954 0.93426 0.92895 1.51484 0.92378 1.19403 0.91259 0.86725 0.95301 1.62391 1.17988 1.44205 1.02375 1.21790 0.95406 0.96062 0.92606 1.22012 0.97741 0.98014 0.98463 1.22067 0.91783 0.86930 0.95289 1.87963 1.31909 1.33300 1.77441 1.21462 0.84791 0.94481 0.97120 1.19777 0.98065 0.96468 0.96295 1.21302 0.96392 0.97664 0.97893 1.21468 1.00147 0.93961 0.99249 1.21556 0.98074 1.00344 0.93907 1.21465 0.96894 0.96566 0.99937 1.21302 0.99280 0.94519 0.98185 1.21575 0.97492 0.97967 0.96815 1.21846 0.94447 0.96066 0.93709 0.92559 0.97819 0.97510 0.92371 0.95752 0.90317 0.91216 0.92175 0.91900 0.91828 0.85334 0.83863 0.83612 0.83951 0.85477 0.89935 0.91134 0.95786 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 2 C 0.01 0.62 5.46 84.65 0.46 1.09 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.56 -30.99 7.72 25.60 0.20 -30.79 16 8 H 0.06 3.14 5.86 -2.91 -0.02 3.12 16 9 C 0.20 10.69 5.12 85.56 0.44 11.13 16 10 N -0.55 -24.01 4.86 -900.92 -4.38 -28.39 16 11 C 0.07 2.75 5.03 86.33 0.43 3.18 16 12 C -0.12 -3.86 5.72 30.65 0.18 -3.68 16 13 C 0.10 2.85 2.68 30.67 0.08 2.93 16 14 O -0.39 -10.83 9.98 -148.98 -1.49 -12.32 16 15 C 0.10 2.21 5.88 71.23 0.42 2.63 16 16 C -0.11 -2.30 5.51 -19.87 -0.11 -2.41 16 17 C -0.11 -2.23 9.70 22.27 0.22 -2.01 16 18 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 19 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 20 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 21 C -0.11 -2.28 9.70 22.27 0.22 -2.07 16 22 C -0.10 -3.15 5.75 30.64 0.18 -2.97 16 23 C 0.07 2.63 5.12 86.32 0.44 3.07 16 24 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 25 H 0.00 0.21 8.08 -2.38 -0.02 0.19 16 26 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.06 2.37 8.12 -2.39 -0.02 2.35 16 28 H 0.02 1.02 6.73 -2.39 -0.02 1.00 16 29 H 0.08 2.10 7.96 -2.39 -0.02 2.08 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 1.72 7.79 -2.39 -0.02 1.71 16 32 H 0.06 1.31 7.91 -2.39 -0.02 1.30 16 33 H 0.06 1.31 8.03 -2.38 -0.02 1.29 16 34 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.02 0.99 6.86 -2.38 -0.02 0.97 16 42 H 0.06 2.55 8.08 -2.39 -0.02 2.53 16 Total: -1.00 -64.04 339.08 1.24 -62.80 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.97 Total: 12.64 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 3.82 Total: -25.28 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -4.09 Total: -83.51 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -1.49 Total: -12.32 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -64.04 1.24 -62.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073106423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.381 kcal (2) G-P(sol) polarization free energy of solvation -64.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds