Wall clock time and date at job start Mon Mar 30 2020 01:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99731 * 2 1 4 4 C 1.38211 * 120.00115 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99732 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99880 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 265.00270 * 6 5 4 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 9 9 O 1.21273 * 120.00140 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.46505 * 120.00050 * 359.97438 * 10 8 7 12 12 C 1.46496 * 120.00054 * 179.97438 * 10 8 7 13 13 C 1.50705 * 109.47066 * 89.99681 * 12 10 8 14 14 H 1.08001 * 119.99987 * 0.02562 * 13 12 10 15 15 C 1.37872 * 120.00127 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00059 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00144 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46966 * 59.99914 * 17 15 13 19 19 H 1.48498 * 109.47378 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47029 * 300.00164 * 17 15 13 21 21 C 1.38210 * 120.00106 * 0.25347 * 5 4 3 22 22 C 1.50699 * 120.00166 * 179.72002 * 21 5 4 23 23 C 1.38206 * 120.00141 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47271 * 90.00384 * 1 2 3 25 25 H 1.09002 * 109.46819 * 210.00090 * 1 2 3 26 26 H 1.09001 * 109.47500 * 329.99729 * 1 2 3 27 27 H 1.07998 * 120.00075 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00450 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47152 * 145.00042 * 6 5 4 30 30 H 1.09001 * 109.46980 * 25.00142 * 6 5 4 31 31 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 32 32 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 33 33 H 1.09003 * 109.46862 * 90.00175 * 11 10 8 34 34 H 1.08996 * 109.47101 * 210.00301 * 11 10 8 35 35 H 1.09003 * 109.46885 * 329.99908 * 11 10 8 36 36 H 1.08998 * 109.47205 * 209.99546 * 12 10 8 37 37 H 1.08997 * 109.47416 * 330.00406 * 12 10 8 38 38 H 0.97001 * 120.00292 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.46714 * 89.99954 * 22 21 5 40 40 H 1.09001 * 109.47281 * 210.00054 * 22 21 5 41 41 H 1.09001 * 109.47263 * 330.00636 * 22 21 5 42 42 H 1.07998 * 120.00511 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0002 0.0005 7 6 6.2886 -0.1255 -1.4365 8 6 7.7957 -0.1260 -1.4364 9 8 8.4021 -0.0345 -0.3901 10 7 8.4696 -0.2273 -2.5992 11 6 7.7371 -0.3373 -3.8632 12 6 9.9345 -0.2273 -2.5993 13 6 10.4369 -1.6428 -2.4759 14 1 9.7351 -2.4606 -2.4051 15 6 11.7924 -1.8938 -2.4546 16 7 12.6470 -0.8980 -2.5414 17 14 12.4151 -3.6484 -2.3025 18 1 11.9196 -4.4507 -3.4497 19 1 13.9000 -3.6486 -2.3036 20 1 11.9205 -4.2409 -1.0339 21 6 3.5807 -1.1969 -0.0053 22 6 4.3342 -2.5019 -0.0117 23 6 2.1980 -1.1969 -0.0005 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6582 2.1326 -0.0004 28 1 4.1203 2.1328 0.0010 29 1 6.1421 -0.8417 0.5900 30 1 6.1420 0.9316 0.4349 31 1 5.9254 -1.0569 -1.8708 32 1 5.9253 0.7163 -2.0259 33 1 7.5554 0.6592 -4.2658 34 1 8.3261 -0.9151 -4.5754 35 1 6.7846 -0.8380 -3.6888 36 1 10.2979 0.2073 -3.5305 37 1 10.2979 0.3617 -1.7572 38 1 13.6007 -1.0747 -2.5268 39 1 4.5158 -2.8215 1.0145 40 1 3.7451 -3.2591 -0.5292 41 1 5.2867 -2.3691 -0.5248 42 1 1.6582 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073869114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:36 Heat of formation + Delta-G solvation = -34.706001 kcal Electronic energy + Delta-G solvation = -20754.919052 eV Core-core repulsion = 17698.940318 eV Total energy + Delta-G solvation = -3055.978734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90414 -38.80709 -35.05107 -34.56998 -32.65438 -32.39839 -31.15685 -28.15509 -27.25162 -26.78744 -25.62585 -23.77628 -22.28571 -21.83807 -19.98199 -18.30406 -16.57669 -16.48146 -16.08574 -15.45710 -15.26369 -14.82674 -14.73579 -14.33275 -14.03904 -13.43440 -13.27667 -13.19047 -12.90275 -12.59485 -12.48125 -12.17397 -12.10130 -12.05264 -11.94630 -11.75092 -11.38367 -11.13754 -11.11793 -10.93363 -10.77578 -10.64404 -10.52989 -10.14297 -9.62514 -8.90918 -8.77691 -8.42199 -8.38467 -7.60809 -6.02708 -4.07596 1.28386 1.34969 3.32568 3.36925 3.39014 3.49520 3.63614 4.04599 4.45948 4.67448 4.72024 4.87677 4.92497 5.09400 5.23600 5.27358 5.31698 5.34388 5.38001 5.45644 5.51471 5.60927 5.63531 5.64432 5.70454 5.81921 5.91360 5.94140 6.02114 6.07631 6.22054 6.25567 6.40558 6.45274 6.51481 6.71915 7.00183 7.08659 7.46673 7.57230 7.93735 8.25473 8.45991 8.91997 9.13745 9.57472 11.05366 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031474 B = 0.003448 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.418547 B = 8118.688991 C = 8472.289113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.126 4.126 4 C -0.109 4.109 5 C -0.081 4.081 6 C -0.066 4.066 7 C -0.133 4.133 8 C 0.502 3.498 9 O -0.543 6.543 10 N -0.604 5.604 11 C 0.084 3.916 12 C 0.245 3.755 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.076 4.076 22 C -0.122 4.122 23 C -0.121 4.121 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.782 1.720 1.559 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C -0.081 4.081 6 C -0.104 4.104 7 C -0.173 4.173 8 C 0.289 3.711 9 O -0.421 6.421 10 N -0.336 5.336 11 C -0.060 4.060 12 C 0.125 3.875 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.076 4.076 22 C -0.179 4.179 23 C -0.139 4.139 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.229 1.812 2.085 22.400 hybrid contribution 0.385 -0.944 -0.119 1.026 sum -21.845 0.868 1.966 21.950 Atomic orbital electron populations 1.20760 0.91498 1.02495 1.02106 1.19849 0.95808 0.93252 1.00496 1.20960 0.94158 0.97311 1.02015 1.21069 0.94022 0.97672 0.99973 1.19875 0.95862 0.92559 0.99808 1.20350 0.89346 1.04452 0.96264 1.21681 0.93868 1.03594 0.98152 1.20372 0.89131 0.77501 0.84111 1.90661 1.70282 1.50149 1.31028 1.48173 1.09477 1.70875 1.05117 1.21631 0.96541 1.00410 0.87459 1.19273 0.72408 0.97576 0.98211 1.21402 0.91708 0.92719 1.50675 0.92554 1.24939 0.96671 0.97423 0.95102 1.69923 1.02313 1.30926 1.50302 0.86558 0.77560 0.84600 0.78703 1.20263 1.21172 1.20160 1.19809 0.93496 0.95082 0.99227 1.20911 1.00540 0.93775 1.02651 1.20870 0.93447 0.97401 1.02188 0.91385 0.91775 0.91755 0.86399 0.85999 0.89986 0.90345 0.89483 0.89668 0.93816 0.90851 0.92452 0.95096 0.93866 0.92669 0.91024 0.91689 0.90666 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.09 -0.95 5.88 -104.63 -0.62 -1.56 16 3 C -0.13 -1.31 9.70 -39.58 -0.38 -1.70 16 4 C -0.11 -1.26 9.68 -39.58 -0.38 -1.64 16 5 C -0.08 -1.02 5.13 -104.62 -0.54 -1.56 16 6 C -0.07 -0.96 3.94 -27.88 -0.11 -1.07 16 7 C -0.13 -1.99 4.04 -27.88 -0.11 -2.10 16 8 C 0.50 10.49 7.67 -10.98 -0.08 10.41 16 9 O -0.54 -13.72 15.56 5.56 0.09 -13.64 16 10 N -0.60 -13.01 2.86 -182.95 -0.52 -13.54 16 11 C 0.08 1.35 10.24 59.85 0.61 1.96 16 12 C 0.24 6.51 5.16 -5.19 -0.03 6.48 16 13 C -0.53 -15.11 9.39 -34.44 -0.32 -15.44 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 17 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.08 -0.90 5.88 -104.62 -0.62 -1.52 16 22 C -0.12 -1.34 9.22 36.00 0.33 -1.01 16 23 C -0.12 -1.29 9.36 -39.58 -0.37 -1.66 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.08 1.27 6.96 -51.93 -0.36 0.91 16 30 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 31 H 0.09 1.19 6.14 -51.93 -0.32 0.87 16 32 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 35 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 36 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 41 H 0.07 0.91 5.40 -51.93 -0.28 0.63 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -33.36 346.93 -8.54 -41.91 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.70 Total: -1.57 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.35 Total: -9.21 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.21 Total: -39.71 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.36 -8.54 -41.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073869114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.203 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds