Wall clock time and date at job start Mon Mar 30 2020 01:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99731 * 2 1 4 4 C 1.38211 * 120.00115 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99732 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99880 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 265.00270 * 6 5 4 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 9 9 O 1.21273 * 120.00140 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.46505 * 120.00050 * 359.97438 * 10 8 7 12 12 C 1.46496 * 120.00054 * 179.97438 * 10 8 7 13 13 C 1.50705 * 109.47066 * 89.99681 * 12 10 8 14 14 H 1.08001 * 119.99987 * 0.02562 * 13 12 10 15 15 C 1.37872 * 120.00127 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00059 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00144 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46966 * 59.99914 * 17 15 13 19 19 H 1.48498 * 109.47378 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47029 * 300.00164 * 17 15 13 21 21 C 1.38210 * 120.00106 * 0.25347 * 5 4 3 22 22 C 1.50699 * 120.00166 * 179.72002 * 21 5 4 23 23 C 1.38206 * 120.00141 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47271 * 90.00384 * 1 2 3 25 25 H 1.09002 * 109.46819 * 210.00090 * 1 2 3 26 26 H 1.09001 * 109.47500 * 329.99729 * 1 2 3 27 27 H 1.07998 * 120.00075 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00450 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47152 * 145.00042 * 6 5 4 30 30 H 1.09001 * 109.46980 * 25.00142 * 6 5 4 31 31 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 32 32 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 33 33 H 1.09003 * 109.46862 * 90.00175 * 11 10 8 34 34 H 1.08996 * 109.47101 * 210.00301 * 11 10 8 35 35 H 1.09003 * 109.46885 * 329.99908 * 11 10 8 36 36 H 1.08998 * 109.47205 * 209.99546 * 12 10 8 37 37 H 1.08997 * 109.47416 * 330.00406 * 12 10 8 38 38 H 0.97001 * 120.00292 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.46714 * 89.99954 * 22 21 5 40 40 H 1.09001 * 109.47281 * 210.00054 * 22 21 5 41 41 H 1.09001 * 109.47263 * 330.00636 * 22 21 5 42 42 H 1.07998 * 120.00511 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0002 0.0005 7 6 6.2886 -0.1255 -1.4365 8 6 7.7957 -0.1260 -1.4364 9 8 8.4021 -0.0345 -0.3901 10 7 8.4696 -0.2273 -2.5992 11 6 7.7371 -0.3373 -3.8632 12 6 9.9345 -0.2273 -2.5993 13 6 10.4369 -1.6428 -2.4759 14 1 9.7351 -2.4606 -2.4051 15 6 11.7924 -1.8938 -2.4546 16 7 12.6470 -0.8980 -2.5414 17 14 12.4151 -3.6484 -2.3025 18 1 11.9196 -4.4507 -3.4497 19 1 13.9000 -3.6486 -2.3036 20 1 11.9205 -4.2409 -1.0339 21 6 3.5807 -1.1969 -0.0053 22 6 4.3342 -2.5019 -0.0117 23 6 2.1980 -1.1969 -0.0005 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6582 2.1326 -0.0004 28 1 4.1203 2.1328 0.0010 29 1 6.1421 -0.8417 0.5900 30 1 6.1420 0.9316 0.4349 31 1 5.9254 -1.0569 -1.8708 32 1 5.9253 0.7163 -2.0259 33 1 7.5554 0.6592 -4.2658 34 1 8.3261 -0.9151 -4.5754 35 1 6.7846 -0.8380 -3.6888 36 1 10.2979 0.2073 -3.5305 37 1 10.2979 0.3617 -1.7572 38 1 13.6007 -1.0747 -2.5268 39 1 4.5158 -2.8215 1.0145 40 1 3.7451 -3.2591 -0.5292 41 1 5.2867 -2.3691 -0.5248 42 1 1.6582 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073869114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:36 Heat of formation + Delta-G solvation = -53.322232 kcal Electronic energy + Delta-G solvation = -20755.726312 eV Core-core repulsion = 17698.940318 eV Total energy + Delta-G solvation = -3056.785994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98626 -40.24974 -36.66500 -35.74423 -34.72308 -33.33439 -32.19029 -29.93354 -28.10854 -27.88350 -27.17483 -25.30112 -23.67548 -22.86248 -20.83875 -19.93352 -18.70672 -17.94329 -17.17044 -17.07244 -16.43406 -16.28218 -16.07636 -15.58715 -14.96369 -14.73196 -14.38682 -14.05275 -14.00349 -13.93517 -13.71056 -13.53566 -13.42075 -13.25851 -13.12326 -13.04659 -12.81278 -12.76969 -12.53720 -12.19803 -12.18962 -12.07951 -11.74546 -11.70277 -11.64424 -10.65114 -10.60440 -9.60803 -9.42048 -9.25984 -8.23037 -6.38437 0.44099 0.52879 1.35972 1.40550 1.47908 1.84465 2.32008 2.46592 2.84580 3.06198 3.64659 3.88614 4.02554 4.06366 4.08817 4.17308 4.28659 4.38752 4.50168 4.53069 4.63197 4.71021 4.73463 4.78772 4.84311 4.89266 4.94469 4.97549 5.01362 5.03463 5.06487 5.20179 5.22407 5.34826 5.42285 5.55441 5.60790 5.74728 5.82820 5.83851 6.05405 6.19193 6.68720 6.79138 7.27438 7.48805 8.83968 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031474 B = 0.003448 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.418547 B = 8118.688991 C = 8472.289113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.118 4.118 5 C -0.098 4.098 6 C -0.058 4.058 7 C -0.113 4.113 8 C 0.493 3.507 9 O -0.599 6.599 10 N -0.612 5.612 11 C 0.078 3.922 12 C 0.258 3.742 13 C -0.544 4.544 14 H 0.054 0.946 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.969 3.031 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.277 1.277 21 C -0.086 4.086 22 C -0.121 4.121 23 C -0.128 4.128 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.128 0.872 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.023 0.977 37 H -0.004 1.004 38 H 0.268 0.732 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.609 0.656 0.676 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.098 4.098 6 C -0.096 4.096 7 C -0.153 4.153 8 C 0.282 3.718 9 O -0.480 6.480 10 N -0.343 5.343 11 C -0.064 4.064 12 C 0.136 3.864 13 C -0.583 4.583 14 H 0.072 0.928 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.793 3.207 18 H -0.183 1.183 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.086 4.086 22 C -0.178 4.178 23 C -0.146 4.146 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.157 0.843 28 H 0.146 0.854 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.041 0.959 37 H 0.015 0.985 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.101 0.751 1.160 25.139 hybrid contribution 1.202 -0.549 0.168 1.332 sum -23.898 0.202 1.328 23.936 Atomic orbital electron populations 1.20816 0.89361 1.03523 1.03048 1.20247 0.97454 0.92877 0.98897 1.21245 0.93734 0.98530 1.01411 1.21224 0.94841 0.97518 0.99993 1.19711 0.94375 0.93599 1.02076 1.20184 0.91050 1.02874 0.95481 1.21624 0.88694 1.05680 0.99295 1.21443 0.91546 0.75864 0.82931 1.90627 1.71954 1.52469 1.32997 1.48222 1.07778 1.70752 1.07597 1.21930 0.97166 1.02453 0.84821 1.18751 0.75971 0.96015 0.95635 1.21686 0.92231 0.93416 1.50950 0.92802 1.25894 0.96861 1.02098 0.94422 1.70048 1.02725 1.33308 1.50860 0.85450 0.77217 0.79053 0.79002 1.18339 1.20297 1.20251 1.19944 0.94270 0.94901 0.99477 1.20904 1.00022 0.94165 1.02684 1.21127 0.92985 0.98613 1.01832 0.90351 0.90854 0.90723 0.84322 0.85431 0.91928 0.91759 0.87405 0.86933 0.91153 0.91549 0.88896 0.95927 0.98548 0.92363 0.91114 0.89874 0.92214 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.09 -1.64 5.88 -19.87 -0.12 -1.76 16 3 C -0.13 -2.39 9.70 22.27 0.22 -2.18 16 4 C -0.12 -2.54 9.68 22.27 0.22 -2.32 16 5 C -0.10 -2.37 5.13 -19.86 -0.10 -2.47 16 6 C -0.06 -1.69 3.94 29.85 0.12 -1.57 16 7 C -0.11 -3.28 4.04 29.85 0.12 -3.16 16 8 C 0.49 20.98 7.67 87.66 0.67 21.65 16 9 O -0.60 -31.85 15.56 -3.01 -0.05 -31.89 16 10 N -0.61 -26.67 2.86 -851.12 -2.43 -29.10 16 11 C 0.08 2.39 10.24 127.77 1.31 3.69 16 12 C 0.26 14.31 5.16 85.64 0.44 14.75 16 13 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 14 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 15 C 0.01 0.36 5.46 84.65 0.46 0.82 16 16 N -0.93 -57.23 13.29 21.44 0.28 -56.94 16 17 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 C -0.09 -1.91 5.88 -19.87 -0.12 -2.02 16 22 C -0.12 -2.52 9.22 71.24 0.66 -1.87 16 23 C -0.13 -2.40 9.36 22.27 0.21 -2.19 16 24 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 26 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 28 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.06 2.03 6.96 -2.39 -0.02 2.01 16 30 H 0.06 2.00 8.01 -2.39 -0.02 1.99 16 31 H 0.11 2.71 6.14 -2.39 -0.01 2.70 16 32 H 0.11 2.68 8.11 -2.39 -0.02 2.66 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 35 H 0.09 2.16 6.44 -2.39 -0.02 2.15 16 36 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 37 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 38 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 41 H 0.06 1.41 5.40 -2.39 -0.01 1.40 16 42 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -75.35 346.93 5.86 -69.49 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.99 Total: 11.95 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 5.04 Total: -10.93 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -2.15 Total: -86.05 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.05 Total: -31.89 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -75.35 5.86 -69.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073869114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.171 kcal (2) G-P(sol) polarization free energy of solvation -75.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds