Wall clock time and date at job start Mon Mar 30 2020 02:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 120.00168 * 2 1 4 4 C 1.38213 * 119.99709 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00102 * 359.95478 * 4 3 2 6 6 C 1.38213 * 120.00261 * 359.85856 * 5 4 3 7 7 C 1.38210 * 119.99695 * 180.02562 * 2 1 3 8 8 C 1.50705 * 120.00030 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.50922 * 324.91414 * 8 7 2 10 10 C 1.53096 * 109.50510 * 84.99690 * 8 7 2 11 11 N 1.47016 * 109.25942 * 176.82343 * 10 8 7 12 12 C 1.46894 * 111.00272 * 177.60825 * 11 10 8 13 13 C 1.50695 * 109.47240 * 66.05004 * 12 11 10 14 14 H 1.08004 * 120.00032 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00190 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99949 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00233 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47535 * 89.99678 * 17 15 13 19 19 H 1.48498 * 109.47053 * 210.00229 * 17 15 13 20 20 H 1.48504 * 109.46924 * 329.99797 * 17 15 13 21 21 C 1.47010 * 110.75668 * 301.38999 * 11 10 8 22 22 H 1.09003 * 109.53933 * 298.65635 * 21 11 10 23 23 C 1.52997 * 109.51293 * 178.54590 * 21 11 10 24 24 C 1.53103 * 109.26073 * 58.60657 * 21 11 10 25 25 O 1.43012 * 109.25715 * 303.16031 * 24 21 11 26 26 H 1.09001 * 109.47562 * 269.98401 * 1 2 3 27 27 H 1.09005 * 109.46932 * 29.98295 * 1 2 3 28 28 H 1.09002 * 109.47615 * 149.97732 * 1 2 3 29 29 H 1.07997 * 119.99889 * 359.97192 * 3 2 1 30 30 H 1.07996 * 119.99585 * 179.97438 * 4 3 2 31 31 H 1.08000 * 119.99763 * 180.02562 * 5 4 3 32 32 H 1.07993 * 120.00329 * 180.21053 * 6 5 4 33 33 H 1.08999 * 109.51205 * 296.76448 * 10 8 7 34 34 H 1.09004 * 109.50767 * 56.89203 * 10 8 7 35 35 H 1.09003 * 109.47249 * 186.05473 * 12 11 10 36 36 H 1.09009 * 109.47126 * 306.04766 * 12 11 10 37 37 H 0.96994 * 119.99862 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.46991 * 300.21946 * 23 21 11 39 39 H 1.08999 * 109.46774 * 60.21094 * 23 21 11 40 40 H 1.09000 * 109.47579 * 180.21627 * 23 21 11 41 41 H 1.08995 * 109.50870 * 183.21645 * 24 21 11 42 42 H 1.09007 * 109.50288 * 63.08721 * 24 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 -0.0001 0.0020 6 6 3.5806 -1.1971 0.0059 7 6 2.1980 -1.1970 -0.0005 8 6 1.4444 -2.5021 -0.0005 9 1 0.5346 -2.3970 0.5904 10 6 1.0792 -2.8815 -1.4381 11 7 0.4119 -4.1915 -1.4393 12 6 -0.0067 -4.5679 -2.7961 13 6 1.2119 -4.7857 -3.6554 14 1 2.1987 -4.6570 -3.2357 15 6 1.0671 -5.1484 -4.9777 16 7 -0.1345 -5.3047 -5.4890 17 14 2.5777 -5.4191 -6.0428 18 1 2.9958 -6.8414 -5.9566 19 1 2.2560 -5.0823 -7.4528 20 1 3.6822 -4.5487 -5.5656 21 6 1.2825 -5.2202 -0.8520 22 1 2.1918 -5.3109 -1.4463 23 6 0.5478 -6.5621 -0.8343 24 6 1.6457 -4.8173 0.5797 25 8 2.2649 -3.5283 0.5642 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6583 2.1326 -0.0005 30 1 4.1204 2.1325 0.0001 31 1 5.3516 -0.0002 0.0029 32 1 4.1205 -2.1324 0.0105 33 1 0.4074 -2.1304 -1.8534 34 1 1.9852 -2.9341 -2.0420 35 1 -0.5909 -5.4872 -2.7542 36 1 -0.6147 -3.7703 -3.2232 37 1 -0.2363 -5.5595 -6.4193 38 1 -0.3621 -6.4703 -0.2412 39 1 0.2895 -6.8484 -1.8538 40 1 1.1924 -7.3236 -0.3953 41 1 2.3369 -5.5482 0.9993 42 1 0.7417 -4.7795 1.1876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075784634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:11 Heat of formation + Delta-G solvation = -22.389110 kcal Electronic energy + Delta-G solvation = -22058.068139 eV Core-core repulsion = 19002.623505 eV Total energy + Delta-G solvation = -3055.444633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95297 -38.49772 -35.53173 -33.33324 -32.55385 -32.03451 -30.43442 -28.00539 -26.99910 -26.08524 -25.05385 -22.84092 -22.29412 -21.45510 -20.32012 -19.20222 -16.60909 -16.34603 -16.19082 -15.43201 -15.09946 -14.61009 -14.55170 -14.20382 -14.03575 -13.72307 -13.48939 -12.96430 -12.83633 -12.56628 -12.18500 -12.02927 -11.96809 -11.68019 -11.42826 -11.15085 -11.00677 -10.96498 -10.86850 -10.69843 -10.51171 -10.23915 -10.08402 -9.80584 -9.66646 -9.10258 -8.60263 -8.45981 -8.32729 -7.26238 -6.05983 -4.14591 1.46914 1.56287 3.25434 3.32616 3.36313 3.85759 4.09272 4.38656 4.79641 4.97105 5.03869 5.16754 5.21465 5.24587 5.40869 5.44778 5.56448 5.60136 5.72795 5.73410 5.81321 5.83404 5.90869 5.96079 6.10403 6.17395 6.18707 6.26035 6.37720 6.45952 6.59728 6.66891 6.69800 6.79931 6.87149 6.93594 7.15316 7.19713 7.50120 7.58472 7.86844 7.97120 8.18920 8.25273 8.94787 9.52359 10.99272 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.005801 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.130334 B = 4825.579511 C = 5424.313171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.131 4.131 6 C -0.089 4.089 7 C -0.073 4.073 8 C 0.133 3.867 9 H 0.070 0.930 10 C 0.041 3.959 11 N -0.536 5.536 12 C 0.186 3.814 13 C -0.548 4.548 14 H 0.056 0.944 15 C 0.066 3.934 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.051 3.949 22 H 0.057 0.943 23 C -0.138 4.138 24 C 0.069 3.931 25 O -0.385 6.385 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.039 0.961 36 H 0.029 0.971 37 H 0.262 0.738 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.477 8.191 12.270 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.076 4.076 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.107 4.107 7 C -0.073 4.073 8 C 0.075 3.925 9 H 0.088 0.912 10 C -0.088 4.088 11 N -0.260 5.260 12 C 0.061 3.939 13 C -0.587 4.587 14 H 0.074 0.926 15 C -0.136 4.136 16 N -0.529 5.529 17 Si 0.714 3.286 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.059 4.059 22 H 0.075 0.925 23 C -0.195 4.195 24 C -0.008 4.008 25 O -0.304 6.304 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.118 8.204 12.457 15.238 hybrid contribution 1.392 -0.295 -1.482 2.055 sum 4.510 7.909 10.975 14.260 Atomic orbital electron populations 1.20929 0.91180 1.03536 1.02345 1.19672 0.96100 0.92259 0.99524 1.20919 0.94216 0.97108 1.02041 1.21072 0.94312 0.97838 1.00778 1.21114 0.99687 0.92553 1.01552 1.21028 0.93729 0.98325 0.97667 1.19546 0.93996 0.93196 1.00593 1.20951 0.91907 0.84748 0.94907 0.91236 1.22489 0.99150 0.93242 0.93919 1.62796 1.37676 1.00571 1.25005 1.19797 0.95478 0.96994 0.81652 1.21712 0.93573 1.47505 0.95907 0.92553 1.24934 0.95671 0.95128 0.97897 1.69938 1.21302 1.47331 1.14322 0.86676 0.83456 0.78555 0.79878 1.20587 1.21114 1.19957 1.22070 0.96600 0.93000 0.94181 0.92521 1.21704 0.99427 0.95020 1.03354 1.22771 0.97381 0.83949 0.96651 1.87859 1.42902 1.17466 1.82164 0.91213 0.91512 0.90445 0.86237 0.86467 0.86368 0.85403 0.90663 0.93276 0.94303 0.95284 0.92802 0.93007 0.90663 0.93545 0.89355 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.22 36.01 0.33 -1.17 16 2 C -0.08 -1.06 5.88 -104.62 -0.62 -1.68 16 3 C -0.12 -1.56 9.70 -39.58 -0.38 -1.95 16 4 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 5 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 6 C -0.09 -1.38 9.35 -39.58 -0.37 -1.75 16 7 C -0.07 -1.16 5.07 -104.62 -0.53 -1.69 16 8 C 0.13 2.27 2.32 -27.83 -0.06 2.20 16 9 H 0.07 1.14 7.00 -51.93 -0.36 0.78 16 10 C 0.04 0.81 4.49 -3.71 -0.02 0.80 16 11 N -0.54 -11.34 4.75 -227.77 -1.08 -12.42 16 12 C 0.19 4.68 4.62 -4.98 -0.02 4.66 16 13 C -0.55 -14.88 7.66 -34.44 -0.26 -15.14 16 14 H 0.06 1.55 5.79 -52.48 -0.30 1.25 16 15 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 16 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 17 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.05 0.98 2.19 -67.60 -0.15 0.83 16 22 H 0.06 1.25 6.42 -51.93 -0.33 0.92 16 23 C -0.14 -2.45 8.88 37.16 0.33 -2.12 16 24 C 0.07 1.14 6.29 37.21 0.23 1.37 16 25 O -0.38 -6.79 9.30 -35.23 -0.33 -7.11 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 28 H 0.08 1.04 5.40 -51.93 -0.28 0.76 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.13 2.01 7.34 -52.49 -0.39 1.63 16 33 H 0.08 1.49 6.83 -51.93 -0.35 1.13 16 34 H 0.05 1.11 6.93 -51.93 -0.36 0.75 16 35 H 0.04 1.03 6.41 -51.93 -0.33 0.70 16 36 H 0.03 0.79 8.11 -51.92 -0.42 0.37 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.56 6.44 -51.93 -0.33 1.22 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -29.30 327.38 -9.58 -38.88 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.41 Total: 2.27 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -2.41 Total: -17.88 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.34 Total: -37.55 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.33 Total: -7.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.30 -9.58 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075784634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.491 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds