Wall clock time and date at job start Mon Mar 30 2020 02:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 120.00168 * 2 1 4 4 C 1.38213 * 119.99709 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00102 * 359.95478 * 4 3 2 6 6 C 1.38213 * 120.00261 * 359.85856 * 5 4 3 7 7 C 1.38210 * 119.99695 * 180.02562 * 2 1 3 8 8 C 1.50705 * 120.00030 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.50922 * 324.91414 * 8 7 2 10 10 C 1.53096 * 109.50510 * 84.99690 * 8 7 2 11 11 N 1.47016 * 109.25942 * 176.82343 * 10 8 7 12 12 C 1.46894 * 111.00272 * 177.60825 * 11 10 8 13 13 C 1.50695 * 109.47240 * 66.05004 * 12 11 10 14 14 H 1.08004 * 120.00032 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00190 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99949 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00233 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47535 * 89.99678 * 17 15 13 19 19 H 1.48498 * 109.47053 * 210.00229 * 17 15 13 20 20 H 1.48504 * 109.46924 * 329.99797 * 17 15 13 21 21 C 1.47010 * 110.75668 * 301.38999 * 11 10 8 22 22 H 1.09003 * 109.53933 * 298.65635 * 21 11 10 23 23 C 1.52997 * 109.51293 * 178.54590 * 21 11 10 24 24 C 1.53103 * 109.26073 * 58.60657 * 21 11 10 25 25 O 1.43012 * 109.25715 * 303.16031 * 24 21 11 26 26 H 1.09001 * 109.47562 * 269.98401 * 1 2 3 27 27 H 1.09005 * 109.46932 * 29.98295 * 1 2 3 28 28 H 1.09002 * 109.47615 * 149.97732 * 1 2 3 29 29 H 1.07997 * 119.99889 * 359.97192 * 3 2 1 30 30 H 1.07996 * 119.99585 * 179.97438 * 4 3 2 31 31 H 1.08000 * 119.99763 * 180.02562 * 5 4 3 32 32 H 1.07993 * 120.00329 * 180.21053 * 6 5 4 33 33 H 1.08999 * 109.51205 * 296.76448 * 10 8 7 34 34 H 1.09004 * 109.50767 * 56.89203 * 10 8 7 35 35 H 1.09003 * 109.47249 * 186.05473 * 12 11 10 36 36 H 1.09009 * 109.47126 * 306.04766 * 12 11 10 37 37 H 0.96994 * 119.99862 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.46991 * 300.21946 * 23 21 11 39 39 H 1.08999 * 109.46774 * 60.21094 * 23 21 11 40 40 H 1.09000 * 109.47579 * 180.21627 * 23 21 11 41 41 H 1.08995 * 109.50870 * 183.21645 * 24 21 11 42 42 H 1.09007 * 109.50288 * 63.08721 * 24 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 -0.0001 0.0020 6 6 3.5806 -1.1971 0.0059 7 6 2.1980 -1.1970 -0.0005 8 6 1.4444 -2.5021 -0.0005 9 1 0.5346 -2.3970 0.5904 10 6 1.0792 -2.8815 -1.4381 11 7 0.4119 -4.1915 -1.4393 12 6 -0.0067 -4.5679 -2.7961 13 6 1.2119 -4.7857 -3.6554 14 1 2.1987 -4.6570 -3.2357 15 6 1.0671 -5.1484 -4.9777 16 7 -0.1345 -5.3047 -5.4890 17 14 2.5777 -5.4191 -6.0428 18 1 2.9958 -6.8414 -5.9566 19 1 2.2560 -5.0823 -7.4528 20 1 3.6822 -4.5487 -5.5656 21 6 1.2825 -5.2202 -0.8520 22 1 2.1918 -5.3109 -1.4463 23 6 0.5478 -6.5621 -0.8343 24 6 1.6457 -4.8173 0.5797 25 8 2.2649 -3.5283 0.5642 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6583 2.1326 -0.0005 30 1 4.1204 2.1325 0.0001 31 1 5.3516 -0.0002 0.0029 32 1 4.1205 -2.1324 0.0105 33 1 0.4074 -2.1304 -1.8534 34 1 1.9852 -2.9341 -2.0420 35 1 -0.5909 -5.4872 -2.7542 36 1 -0.6147 -3.7703 -3.2232 37 1 -0.2363 -5.5595 -6.4193 38 1 -0.3621 -6.4703 -0.2412 39 1 0.2895 -6.8484 -1.8538 40 1 1.1924 -7.3236 -0.3953 41 1 2.3369 -5.5482 0.9993 42 1 0.7417 -4.7795 1.1876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075784634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:10 Heat of formation + Delta-G solvation = -39.826909 kcal Electronic energy + Delta-G solvation = -22058.824298 eV Core-core repulsion = 19002.623505 eV Total energy + Delta-G solvation = -3056.200793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26407 -39.77466 -37.17163 -34.64697 -34.47247 -33.26455 -31.77996 -29.76285 -28.19847 -27.35542 -26.83581 -24.31309 -23.98365 -22.63855 -21.49323 -20.89543 -18.42963 -17.78407 -17.54846 -16.92827 -16.60116 -16.22869 -15.95128 -15.61305 -15.29954 -15.16440 -14.74513 -14.52766 -14.10145 -13.95879 -13.72452 -13.33170 -13.22962 -13.03664 -12.99628 -12.82348 -12.76702 -12.50387 -12.30461 -12.18910 -12.01222 -11.85740 -11.81436 -11.64151 -11.23856 -10.65046 -10.52821 -9.67035 -9.45384 -9.13183 -8.20004 -6.37799 0.41142 0.51600 1.31339 1.32406 1.42499 2.33064 2.69776 2.87431 3.05660 3.20344 3.85854 3.94789 3.97947 4.04987 4.16662 4.20743 4.26580 4.33285 4.42571 4.47073 4.58409 4.67896 4.74066 4.82046 4.85120 4.86302 4.93533 4.98090 5.03654 5.14859 5.18772 5.24969 5.32110 5.34628 5.41322 5.58144 5.63618 5.71313 5.74703 5.99457 6.13679 6.17405 6.22331 6.41926 6.80678 7.32813 8.83009 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.005801 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.130334 B = 4825.579511 C = 5424.313171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.117 4.117 5 C -0.136 4.136 6 C -0.111 4.111 7 C -0.100 4.100 8 C 0.146 3.854 9 H 0.078 0.922 10 C 0.049 3.951 11 N -0.532 5.532 12 C 0.201 3.799 13 C -0.553 4.553 14 H 0.047 0.953 15 C 0.017 3.983 16 N -0.922 5.922 17 Si 0.950 3.050 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.275 1.275 21 C 0.048 3.952 22 H 0.024 0.976 23 C -0.130 4.130 24 C 0.074 3.926 25 O -0.393 6.393 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.139 0.861 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.014 0.986 35 H 0.022 0.978 36 H 0.001 0.999 37 H 0.266 0.734 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 9.470 13.602 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.154 4.154 6 C -0.129 4.129 7 C -0.101 4.101 8 C 0.088 3.912 9 H 0.096 0.904 10 C -0.080 4.080 11 N -0.256 5.256 12 C 0.075 3.925 13 C -0.592 4.592 14 H 0.065 0.935 15 C -0.183 4.183 16 N -0.561 5.561 17 Si 0.775 3.225 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.200 1.200 21 C -0.061 4.061 22 H 0.042 0.958 23 C -0.187 4.187 24 C -0.003 4.003 25 O -0.312 6.312 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.167 0.833 30 H 0.168 0.832 31 H 0.157 0.843 32 H 0.132 0.868 33 H 0.088 0.912 34 H 0.032 0.968 35 H 0.040 0.960 36 H 0.019 0.981 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.135 0.865 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.156 9.481 13.807 17.256 hybrid contribution 1.073 -0.640 -1.867 2.247 sum 5.229 8.841 11.939 15.749 Atomic orbital electron populations 1.20940 0.90132 1.03408 1.03314 1.19950 0.97077 0.92246 0.99271 1.21311 0.94706 0.97581 1.00785 1.21498 0.94457 0.98693 0.98841 1.21396 1.00902 0.92160 1.00949 1.21075 0.93805 0.98892 0.99101 1.19582 0.94379 0.93146 1.02989 1.20813 0.92532 0.85436 0.92413 0.90381 1.22436 0.97105 0.92460 0.95983 1.62755 1.38666 1.01761 1.22418 1.19439 0.94395 0.95062 0.83606 1.21869 0.93680 1.47173 0.96475 0.93497 1.25708 0.98479 0.94914 0.99188 1.70041 1.23162 1.48133 1.14809 0.85679 0.79840 0.78724 0.78233 1.19605 1.20325 1.19984 1.22198 0.94940 0.93362 0.95646 0.95769 1.21629 1.00580 0.94886 1.01621 1.22865 0.98910 0.84094 0.94396 1.87870 1.43484 1.17956 1.81866 0.89629 0.89727 0.92450 0.83336 0.83181 0.84272 0.86827 0.91196 0.96776 0.95988 0.98083 0.92530 0.91567 0.94264 0.90429 0.86474 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 9.22 71.24 0.66 -2.13 16 2 C -0.09 -2.29 5.88 -19.87 -0.12 -2.40 16 3 C -0.13 -2.80 9.70 22.27 0.22 -2.59 16 4 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 5 C -0.14 -3.36 10.05 22.27 0.22 -3.14 16 6 C -0.11 -3.40 9.35 22.27 0.21 -3.19 16 7 C -0.10 -3.18 5.07 -19.86 -0.10 -3.28 16 8 C 0.15 5.03 2.32 29.88 0.07 5.10 16 9 H 0.08 2.54 7.00 -2.39 -0.02 2.52 16 10 C 0.05 2.04 4.49 86.31 0.39 2.43 16 11 N -0.53 -23.33 4.75 -874.54 -4.15 -27.48 16 12 C 0.20 10.66 4.62 85.56 0.40 11.06 16 13 C -0.55 -31.26 7.66 25.60 0.20 -31.06 16 14 H 0.05 2.70 5.79 -2.91 -0.02 2.69 16 15 C 0.02 0.96 5.46 84.65 0.46 1.42 16 16 N -0.92 -54.91 13.29 21.45 0.28 -54.62 16 17 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 21 C 0.05 1.86 2.19 44.93 0.10 1.96 16 22 H 0.02 1.11 6.42 -2.39 -0.02 1.09 16 23 C -0.13 -4.59 8.88 71.98 0.64 -3.95 16 24 C 0.07 2.33 6.29 72.02 0.45 2.78 16 25 O -0.39 -13.73 9.30 -148.98 -1.39 -15.12 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 1.61 8.09 -2.38 -0.02 1.59 16 28 H 0.06 1.54 5.40 -2.39 -0.01 1.53 16 29 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.11 3.69 7.34 -2.91 -0.02 3.67 16 33 H 0.07 2.92 6.83 -2.39 -0.02 2.90 16 34 H 0.01 0.67 6.93 -2.38 -0.02 0.66 16 35 H 0.02 1.24 6.41 -2.39 -0.02 1.22 16 36 H 0.00 0.06 8.11 -2.38 -0.02 0.04 16 37 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.04 1.66 6.44 -2.39 -0.02 1.65 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -65.42 327.38 1.79 -63.63 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.00 Total: 16.00 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 4.01 Total: -29.27 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -3.87 Total: -82.10 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -1.39 Total: -15.12 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.42 1.79 -63.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075784634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.805 kcal (2) G-P(sol) polarization free energy of solvation -65.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds