Wall clock time and date at job start Mon Mar 30 2020 01:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00025 * 2 1 4 4 H 1.48501 * 109.47199 * 270.00047 * 3 2 1 5 5 H 1.48493 * 109.47307 * 30.00331 * 3 2 1 6 6 H 1.48497 * 109.46968 * 150.00462 * 3 2 1 7 7 C 1.37873 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00601 * 359.97438 * 7 2 1 10 10 N 1.46886 * 109.47508 * 184.89003 * 9 7 2 11 11 C 1.47903 * 111.00134 * 184.22082 * 10 9 7 12 12 C 1.53996 * 107.05985 * 145.84409 * 11 10 9 13 13 C 1.54601 * 105.13926 * 358.77646 * 12 11 10 14 14 H 1.08998 * 110.72241 * 96.40063 * 13 12 11 15 15 C 1.53004 * 110.72292 * 219.50851 * 13 12 11 16 16 O 1.42904 * 109.46656 * 291.14732 * 15 13 12 17 17 C 1.42907 * 113.99410 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.46677 * 180.02562 * 17 16 15 19 19 C 1.38238 * 119.99588 * 269.71892 * 18 17 16 20 20 C 1.38234 * 119.99998 * 179.74785 * 19 18 17 21 21 C 1.38234 * 119.99871 * 0.52678 * 20 19 18 22 22 C 1.38237 * 120.00048 * 359.75076 * 21 20 19 23 23 C 1.38231 * 119.99905 * 359.97438 * 22 21 20 24 24 C 1.49009 * 110.97244 * 301.66423 * 10 9 7 25 25 H 0.96995 * 119.99952 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46516 * 64.88408 * 9 7 2 27 27 H 1.08999 * 109.46446 * 304.89102 * 9 7 2 28 28 H 1.09000 * 109.91336 * 26.49092 * 11 10 9 29 29 H 1.09000 * 110.08674 * 265.29064 * 11 10 9 30 30 H 1.08997 * 110.31023 * 239.86350 * 12 11 10 31 31 H 1.08994 * 110.30973 * 117.69083 * 12 11 10 32 32 H 1.09000 * 109.47243 * 51.14808 * 15 13 12 33 33 H 1.08997 * 109.47075 * 171.14864 * 15 13 12 34 34 H 1.09003 * 109.46569 * 299.99365 * 17 16 15 35 35 H 1.08997 * 109.47325 * 59.99596 * 17 16 15 36 36 H 1.08003 * 119.99653 * 0.02562 * 19 18 17 37 37 H 1.07995 * 120.00009 * 180.30049 * 20 19 18 38 38 H 1.08003 * 120.00020 * 179.76515 * 21 20 19 39 39 H 1.08001 * 119.99919 * 179.97438 * 22 21 20 40 40 H 1.08006 * 120.00343 * 180.02562 * 23 22 21 41 41 H 1.09003 * 110.86778 * 81.89778 * 24 10 9 42 42 H 1.08998 * 110.68065 * 318.61570 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2012 -3.6132 0.1169 11 6 1.5063 -4.9152 0.0191 12 6 2.4646 -5.8862 -0.6952 13 6 3.7218 -5.0470 -1.0197 14 1 4.4869 -5.1874 -0.2561 15 6 4.2687 -5.4040 -2.4034 16 8 4.8073 -6.7274 -2.3757 17 6 5.3478 -7.1611 -3.6255 18 6 5.8842 -8.5620 -3.4817 19 6 7.2010 -8.7633 -3.1120 20 6 7.6916 -10.0484 -2.9750 21 6 6.8686 -11.1320 -3.2182 22 6 5.5534 -10.9307 -3.5934 23 6 5.0612 -9.6457 -3.7249 24 6 3.1875 -3.5928 -0.9998 25 1 -0.4850 0.8400 0.0004 26 1 0.6912 -2.5955 -0.9309 27 1 0.5606 -2.5201 0.8427 28 1 0.5899 -4.8043 -0.5606 29 1 1.2721 -5.2903 1.0153 30 1 2.0108 -6.2585 -1.6136 31 1 2.7230 -6.7155 -0.0368 32 1 3.4633 -5.3548 -3.1362 33 1 5.0528 -4.6982 -2.6773 34 1 4.5650 -7.1482 -4.3839 35 1 6.1544 -6.4916 -3.9244 36 1 7.8451 -7.9166 -2.9259 37 1 8.7189 -10.2057 -2.6815 38 1 7.2530 -12.1361 -3.1148 39 1 4.9106 -11.7774 -3.7838 40 1 4.0336 -9.4883 -4.0177 41 1 3.9941 -2.8895 -0.7926 42 1 2.6969 -3.3504 -1.9424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075864224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:06 Heat of formation + Delta-G solvation = -23.488706 kcal Electronic energy + Delta-G solvation = -20308.234356 eV Core-core repulsion = 17252.742040 eV Total energy + Delta-G solvation = -3055.492315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.59413 -38.59058 -37.16612 -33.33326 -32.31172 -31.13223 -31.11881 -29.00845 -26.69078 -26.02329 -24.49547 -22.81203 -22.21583 -21.52780 -20.01035 -19.72968 -17.13078 -16.74544 -16.20245 -16.04844 -15.67040 -15.24629 -14.95069 -14.51373 -14.25311 -13.64496 -13.61058 -13.31041 -12.96246 -12.76805 -12.52161 -12.42743 -11.94762 -11.75991 -11.29308 -11.25836 -11.14028 -11.02321 -10.73932 -10.55663 -10.51994 -10.36092 -10.09806 -9.77899 -9.58487 -9.14766 -9.10409 -9.05671 -8.45979 -7.30489 -6.03420 -4.04918 1.04004 1.17500 3.31130 3.36450 3.37486 3.42002 3.94111 4.42709 4.58909 4.62628 4.77293 4.87291 4.91815 5.04427 5.12163 5.18326 5.28582 5.30339 5.35844 5.41447 5.44719 5.59876 5.70227 5.73400 5.80511 5.81002 6.01184 6.15355 6.20865 6.26205 6.28645 6.38070 6.39777 6.58750 6.67340 6.73003 6.74802 7.19264 7.23156 7.33474 7.76310 8.00857 8.21195 8.52216 9.02366 9.59413 11.07991 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037550 B = 0.002795 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.489134 B =10014.198726 C =10447.529847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.184 3.816 10 N -0.516 5.516 11 C 0.032 3.968 12 C -0.116 4.116 13 C -0.094 4.094 14 H 0.085 0.915 15 C 0.072 3.928 16 O -0.379 6.379 17 C 0.101 3.899 18 C -0.086 4.086 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.099 4.099 24 C 0.062 3.938 25 H 0.261 0.739 26 H -0.011 1.011 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.150 -19.734 -8.975 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.058 3.942 10 N -0.240 5.240 11 C -0.097 4.097 12 C -0.154 4.154 13 C -0.113 4.113 14 H 0.104 0.896 15 C -0.005 4.005 16 O -0.298 6.298 17 C 0.024 3.976 18 C -0.086 4.086 19 C -0.117 4.117 20 C -0.143 4.143 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.117 4.117 24 C -0.067 4.067 25 H 0.071 0.929 26 H 0.006 0.994 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.098 0.902 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.222 -19.643 -8.288 24.575 hybrid contribution -0.146 1.046 -1.004 1.457 sum 12.075 -18.597 -9.293 24.042 Atomic orbital electron populations 1.69960 1.06078 1.26784 1.50913 1.24997 0.94875 0.99357 0.95364 0.86499 0.79850 0.83091 0.78006 1.20750 1.21208 1.19740 1.21184 0.93434 0.90069 1.50224 0.91920 1.19901 0.90728 0.87716 0.95819 1.64947 1.15885 1.01859 1.41337 1.22846 0.95910 0.91421 0.99514 1.22355 0.95241 0.97868 0.99900 1.22153 0.97636 0.96372 0.95145 0.89642 1.22593 0.96893 0.82973 0.98050 1.87978 1.78629 1.31940 1.31282 1.21280 0.97304 0.91793 0.87216 1.19664 0.94051 0.94332 1.00565 1.21100 0.95169 0.97326 0.98137 1.21151 0.99957 0.92592 1.00554 1.21190 0.94145 0.98908 0.99347 1.21152 0.95834 0.96938 1.00325 1.21096 0.99420 0.92196 0.98994 1.23006 0.96575 0.93205 0.93869 0.92908 0.99364 0.94647 0.94658 0.91472 0.92272 0.91639 0.93301 0.93120 0.92599 0.92542 0.85888 0.85962 0.86111 0.85964 0.85910 0.90203 0.94209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.50 8.68 -34.44 -0.30 -14.80 16 8 H 0.06 1.74 6.72 -52.48 -0.35 1.39 16 9 C 0.18 4.92 4.61 -4.98 -0.02 4.90 16 10 N -0.52 -11.59 5.35 -231.48 -1.24 -12.83 16 11 C 0.03 0.60 6.70 -2.75 -0.02 0.58 16 12 C -0.12 -1.84 6.41 -25.37 -0.16 -2.00 16 13 C -0.09 -1.51 3.32 -88.75 -0.29 -1.80 16 14 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 15 C 0.07 0.97 5.27 37.16 0.20 1.17 16 16 O -0.38 -5.17 10.22 -35.23 -0.36 -5.53 16 17 C 0.10 1.08 6.06 36.01 0.22 1.30 16 18 C -0.09 -0.92 5.51 -104.62 -0.58 -1.50 16 19 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 20 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 21 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 23 C -0.10 -0.98 9.70 -39.59 -0.38 -1.37 16 24 C 0.06 1.21 5.18 -1.63 -0.01 1.20 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H -0.01 -0.32 7.98 -51.93 -0.41 -0.73 16 27 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.68 7.67 -51.93 -0.40 0.28 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.06 0.88 7.76 -51.93 -0.40 0.48 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.64 8.02 -51.93 -0.42 0.23 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 41 H 0.08 1.60 7.29 -51.93 -0.38 1.22 16 42 H 0.04 0.80 7.93 -51.93 -0.41 0.39 16 LS Contribution 345.30 15.07 5.20 5.20 Total: -1.00 -31.30 345.30 -10.68 -41.98 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.98 Total: -2.80 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -3.03 Total: -16.53 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.50 Total: -39.03 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.36 Total: -5.53 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.30 -10.68 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075864224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.493 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds