Wall clock time and date at job start Mon Mar 30 2020 01:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00025 * 2 1 4 4 H 1.48501 * 109.47199 * 270.00047 * 3 2 1 5 5 H 1.48493 * 109.47307 * 30.00331 * 3 2 1 6 6 H 1.48497 * 109.46968 * 150.00462 * 3 2 1 7 7 C 1.37873 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00601 * 359.97438 * 7 2 1 10 10 N 1.46886 * 109.47508 * 184.89003 * 9 7 2 11 11 C 1.47903 * 111.00134 * 184.22082 * 10 9 7 12 12 C 1.53996 * 107.05985 * 145.84409 * 11 10 9 13 13 C 1.54601 * 105.13926 * 358.77646 * 12 11 10 14 14 H 1.08998 * 110.72241 * 96.40063 * 13 12 11 15 15 C 1.53004 * 110.72292 * 219.50851 * 13 12 11 16 16 O 1.42904 * 109.46656 * 291.14732 * 15 13 12 17 17 C 1.42907 * 113.99410 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.46677 * 180.02562 * 17 16 15 19 19 C 1.38238 * 119.99588 * 269.71892 * 18 17 16 20 20 C 1.38234 * 119.99998 * 179.74785 * 19 18 17 21 21 C 1.38234 * 119.99871 * 0.52678 * 20 19 18 22 22 C 1.38237 * 120.00048 * 359.75076 * 21 20 19 23 23 C 1.38231 * 119.99905 * 359.97438 * 22 21 20 24 24 C 1.49009 * 110.97244 * 301.66423 * 10 9 7 25 25 H 0.96995 * 119.99952 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46516 * 64.88408 * 9 7 2 27 27 H 1.08999 * 109.46446 * 304.89102 * 9 7 2 28 28 H 1.09000 * 109.91336 * 26.49092 * 11 10 9 29 29 H 1.09000 * 110.08674 * 265.29064 * 11 10 9 30 30 H 1.08997 * 110.31023 * 239.86350 * 12 11 10 31 31 H 1.08994 * 110.30973 * 117.69083 * 12 11 10 32 32 H 1.09000 * 109.47243 * 51.14808 * 15 13 12 33 33 H 1.08997 * 109.47075 * 171.14864 * 15 13 12 34 34 H 1.09003 * 109.46569 * 299.99365 * 17 16 15 35 35 H 1.08997 * 109.47325 * 59.99596 * 17 16 15 36 36 H 1.08003 * 119.99653 * 0.02562 * 19 18 17 37 37 H 1.07995 * 120.00009 * 180.30049 * 20 19 18 38 38 H 1.08003 * 120.00020 * 179.76515 * 21 20 19 39 39 H 1.08001 * 119.99919 * 179.97438 * 22 21 20 40 40 H 1.08006 * 120.00343 * 180.02562 * 23 22 21 41 41 H 1.09003 * 110.86778 * 81.89778 * 24 10 9 42 42 H 1.08998 * 110.68065 * 318.61570 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2012 -3.6132 0.1169 11 6 1.5063 -4.9152 0.0191 12 6 2.4646 -5.8862 -0.6952 13 6 3.7218 -5.0470 -1.0197 14 1 4.4869 -5.1874 -0.2561 15 6 4.2687 -5.4040 -2.4034 16 8 4.8073 -6.7274 -2.3757 17 6 5.3478 -7.1611 -3.6255 18 6 5.8842 -8.5620 -3.4817 19 6 7.2010 -8.7633 -3.1120 20 6 7.6916 -10.0484 -2.9750 21 6 6.8686 -11.1320 -3.2182 22 6 5.5534 -10.9307 -3.5934 23 6 5.0612 -9.6457 -3.7249 24 6 3.1875 -3.5928 -0.9998 25 1 -0.4850 0.8400 0.0004 26 1 0.6912 -2.5955 -0.9309 27 1 0.5606 -2.5201 0.8427 28 1 0.5899 -4.8043 -0.5606 29 1 1.2721 -5.2903 1.0153 30 1 2.0108 -6.2585 -1.6136 31 1 2.7230 -6.7155 -0.0368 32 1 3.4633 -5.3548 -3.1362 33 1 5.0528 -4.6982 -2.6773 34 1 4.5650 -7.1482 -4.3839 35 1 6.1544 -6.4916 -3.9244 36 1 7.8451 -7.9166 -2.9259 37 1 8.7189 -10.2057 -2.6815 38 1 7.2530 -12.1361 -3.1148 39 1 4.9106 -11.7774 -3.7838 40 1 4.0336 -9.4883 -4.0177 41 1 3.9941 -2.8895 -0.7926 42 1 2.6969 -3.3504 -1.9424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075864224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:05 Heat of formation + Delta-G solvation = -42.070420 kcal Electronic energy + Delta-G solvation = -20309.040119 eV Core-core repulsion = 17252.742040 eV Total energy + Delta-G solvation = -3056.298079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39327 -39.90591 -38.30551 -35.26660 -33.56640 -32.43605 -31.78064 -30.50955 -28.41085 -27.19234 -25.81596 -24.02496 -23.46725 -22.27111 -21.70070 -21.09644 -18.55114 -17.82840 -17.51925 -17.08492 -16.90887 -16.49339 -16.29284 -15.72700 -15.53161 -14.97710 -14.73141 -14.45715 -14.27144 -14.11002 -13.66826 -13.63137 -13.28435 -13.25568 -12.92659 -12.67542 -12.56704 -12.34197 -12.06539 -11.96162 -11.82574 -11.75483 -11.68199 -11.45171 -11.18709 -10.65154 -10.56547 -9.81395 -9.74927 -9.14215 -8.23321 -6.33881 0.34939 0.50895 1.40161 1.42194 1.53887 2.39225 2.54255 3.06256 3.11444 3.39104 3.77575 3.82465 3.91829 3.94038 4.10450 4.16926 4.29380 4.33928 4.35782 4.41878 4.49624 4.52240 4.59483 4.67779 4.76678 4.78744 4.80441 4.94450 5.03850 5.08461 5.08856 5.16646 5.17013 5.30390 5.38970 5.55909 5.61591 5.61830 5.68464 5.95347 6.10463 6.20318 6.27335 6.51806 6.81826 7.36222 8.88894 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037550 B = 0.002795 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.489134 B =10014.198726 C =10447.529847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.065 0.935 9 C 0.200 3.800 10 N -0.530 5.530 11 C 0.028 3.972 12 C -0.105 4.105 13 C -0.082 4.082 14 H 0.085 0.915 15 C 0.079 3.921 16 O -0.394 6.394 17 C 0.098 3.902 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.114 4.114 24 C 0.062 3.938 25 H 0.265 0.735 26 H -0.037 1.037 27 H 0.003 0.997 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.129 0.871 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.128 0.872 41 H 0.072 0.928 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.995 -20.683 -9.591 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.083 0.917 9 C 0.073 3.927 10 N -0.255 5.255 11 C -0.100 4.100 12 C -0.143 4.143 13 C -0.102 4.102 14 H 0.103 0.897 15 C 0.002 3.998 16 O -0.314 6.314 17 C 0.022 3.978 18 C -0.107 4.107 19 C -0.132 4.132 20 C -0.149 4.149 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.132 4.132 24 C -0.066 4.066 25 H 0.074 0.926 26 H -0.020 1.020 27 H 0.021 0.979 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.147 0.853 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 14.081 -20.618 -8.912 26.510 hybrid contribution -0.722 1.236 -0.808 1.644 sum 13.359 -19.381 -9.720 25.467 Atomic orbital electron populations 1.70092 1.07830 1.28009 1.51557 1.25967 0.95787 1.03394 0.94600 0.85341 0.78539 0.77969 0.78543 1.19558 1.20705 1.18824 1.21496 0.93698 0.91051 1.50431 0.91661 1.19537 0.90733 0.89358 0.93057 1.64831 1.15624 1.02065 1.42960 1.22934 0.96197 0.90540 1.00328 1.22301 0.94275 0.97295 1.00394 1.21993 0.97574 0.93634 0.96955 0.89685 1.22419 0.97470 0.83651 0.96244 1.87933 1.78880 1.31532 1.33044 1.21427 0.97869 0.92237 0.86242 1.19793 0.94689 0.94394 1.01819 1.21313 0.95171 0.98272 0.98461 1.21467 1.01097 0.92283 1.00064 1.21552 0.93972 1.00050 0.98362 1.21463 0.96490 0.97145 0.99840 1.21301 0.99805 0.92704 0.99431 1.22977 0.95517 0.95757 0.92359 0.92605 1.01956 0.97852 0.95583 0.90819 0.90965 0.90096 0.92762 0.91972 0.91693 0.91458 0.85268 0.83966 0.83736 0.84026 0.85403 0.90933 0.95087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.53 -30.57 8.68 25.60 0.22 -30.35 16 8 H 0.07 3.66 6.72 -2.91 -0.02 3.64 16 9 C 0.20 11.11 4.61 85.56 0.39 11.50 16 10 N -0.53 -24.27 5.35 -886.26 -4.74 -29.01 16 11 C 0.03 1.07 6.70 86.45 0.58 1.65 16 12 C -0.10 -3.18 6.41 31.48 0.20 -2.98 16 13 C -0.08 -2.54 3.32 -9.58 -0.03 -2.57 16 14 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 15 C 0.08 2.01 5.27 71.98 0.38 2.39 16 16 O -0.39 -10.05 10.22 -148.98 -1.52 -11.57 16 17 C 0.10 1.97 6.06 71.24 0.43 2.40 16 18 C -0.11 -2.16 5.51 -19.87 -0.11 -2.26 16 19 C -0.11 -2.10 9.70 22.27 0.22 -1.88 16 20 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 21 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 22 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 23 C -0.11 -2.12 9.70 22.27 0.22 -1.90 16 24 C 0.06 2.42 5.18 86.56 0.45 2.87 16 25 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 26 H -0.04 -2.20 7.98 -2.38 -0.02 -2.22 16 27 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.03 1.03 7.67 -2.39 -0.02 1.01 16 29 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.07 2.03 7.76 -2.39 -0.02 2.01 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.05 1.33 8.02 -2.39 -0.02 1.31 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16 35 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 36 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.07 2.91 7.29 -2.39 -0.02 2.89 16 42 H 0.03 1.26 7.93 -2.39 -0.02 1.24 16 Total: -1.00 -67.65 345.30 1.09 -66.55 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.97 Total: 10.09 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 4.08 Total: -25.78 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -4.46 Total: -85.87 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.52 Total: -11.57 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.65 1.09 -66.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075864224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.480 kcal (2) G-P(sol) polarization free energy of solvation -67.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds