Wall clock time and date at job start Mon Mar 30 2020 01:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00021 * 2 1 4 4 H 1.48499 * 109.47192 * 270.00311 * 3 2 1 5 5 H 1.48502 * 109.47079 * 30.00205 * 3 2 1 6 6 H 1.48503 * 109.46795 * 150.00186 * 3 2 1 7 7 C 1.37872 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99952 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00320 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.47466 * 185.23137 * 9 7 2 11 11 C 1.48559 * 111.00245 * 175.72561 * 10 9 7 12 12 C 1.54381 * 104.59866 * 200.96145 * 11 10 9 13 13 C 1.54255 * 105.05830 * 23.85164 * 12 11 10 14 14 H 1.09005 * 110.32688 * 241.00306 * 13 12 11 15 15 C 1.53002 * 110.32330 * 118.89604 * 13 12 11 16 16 O 1.42905 * 109.46770 * 66.45509 * 15 13 12 17 17 C 1.42902 * 113.99739 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.46837 * 179.97438 * 17 16 15 19 19 C 1.38234 * 119.99828 * 269.72841 * 18 17 16 20 20 C 1.38244 * 119.99717 * 179.76879 * 19 18 17 21 21 C 1.38231 * 119.99897 * 0.50880 * 20 19 18 22 22 C 1.38248 * 119.99952 * 359.74409 * 21 20 19 23 23 C 1.38230 * 119.99724 * 0.02562 * 22 21 20 24 24 C 1.48564 * 111.00163 * 60.30951 * 10 9 7 25 25 H 0.97003 * 119.99521 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46681 * 65.23181 * 9 7 2 27 27 H 1.08999 * 109.47193 * 305.23454 * 9 7 2 28 28 H 1.09001 * 110.40893 * 82.18403 * 11 10 9 29 29 H 1.08994 * 110.41243 * 319.74394 * 11 10 9 30 30 H 1.09003 * 110.32044 * 264.95982 * 12 11 10 31 31 H 1.08989 * 110.41078 * 142.79330 * 12 11 10 32 32 H 1.08998 * 109.47366 * 306.45554 * 15 13 12 33 33 H 1.08995 * 109.47276 * 186.45223 * 15 13 12 34 34 H 1.08993 * 109.47181 * 299.99983 * 17 16 15 35 35 H 1.09001 * 109.47001 * 60.00039 * 17 16 15 36 36 H 1.08002 * 120.00279 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.99633 * 180.22804 * 20 19 18 38 38 H 1.08001 * 120.00340 * 179.72393 * 21 20 19 39 39 H 1.07995 * 119.99665 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.99692 * 179.97438 * 23 22 21 41 41 H 1.09004 * 110.40926 * 40.25534 * 24 10 9 42 42 H 1.09003 * 110.41142 * 277.82207 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5732 -0.1279 11 6 5.4825 -2.6046 -0.2351 12 6 5.7968 -3.9690 -0.8855 13 6 4.5126 -4.3548 -1.6480 14 1 4.1058 -5.2875 -1.2571 15 6 4.8029 -4.4885 -3.1443 16 8 5.6741 -5.5999 -3.3629 17 6 6.0094 -5.8144 -4.7354 18 6 6.9275 -7.0041 -4.8482 19 6 8.2973 -6.8283 -4.7865 20 6 9.1394 -7.9202 -4.8851 21 6 8.6120 -9.1865 -5.0560 22 6 7.2423 -9.3616 -5.1230 23 6 6.4002 -8.2703 -5.0196 24 6 3.5304 -3.1910 -1.3943 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.7638 0.9320 27 1 3.8746 -0.6011 -0.8405 28 1 5.9366 -2.5412 0.7537 29 1 5.8351 -1.7911 -0.8691 30 1 6.0194 -4.7114 -0.1190 31 1 6.6343 -3.8767 -1.5768 32 1 5.2794 -3.5769 -3.5048 33 1 3.8687 -4.6477 -3.6828 34 1 5.1001 -6.0013 -5.3066 35 1 6.5107 -4.9303 -5.1294 36 1 8.7095 -5.8383 -4.6578 37 1 10.2094 -7.7833 -4.8332 38 1 9.2700 -10.0390 -5.1376 39 1 6.8304 -10.3509 -5.2569 40 1 5.3301 -8.4071 -5.0723 41 1 3.5774 -2.4692 -2.2098 42 1 2.5147 -3.5691 -1.2783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075864225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:09 Heat of formation + Delta-G solvation = -19.661629 kcal Electronic energy + Delta-G solvation = -20392.032308 eV Core-core repulsion = 17336.705948 eV Total energy + Delta-G solvation = -3055.326361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.61383 -38.72139 -37.21293 -33.35259 -32.31331 -31.30160 -31.14101 -29.10857 -27.09034 -26.18540 -24.47697 -22.82155 -22.05127 -21.51209 -20.06087 -19.66135 -17.15017 -16.85198 -16.44136 -16.17050 -15.70506 -15.35429 -14.97271 -14.54738 -14.17704 -13.85696 -13.65099 -13.25743 -12.92718 -12.88815 -12.58745 -12.39402 -12.23037 -11.89106 -11.46729 -11.29829 -11.22535 -11.15319 -10.69995 -10.61636 -10.50747 -10.28655 -10.09760 -9.78153 -9.60504 -9.23546 -9.15679 -9.06833 -8.59654 -7.54492 -6.06972 -4.04868 1.03006 1.16543 3.26483 3.34395 3.35270 3.37642 3.92029 4.40660 4.57969 4.60409 4.75971 4.84537 4.89876 5.01579 5.07012 5.16451 5.23876 5.26310 5.28136 5.36550 5.41104 5.58074 5.62135 5.72291 5.74623 5.79856 5.92672 6.09580 6.19903 6.24953 6.25320 6.29027 6.37064 6.45152 6.60746 6.67047 6.73784 6.79612 6.99091 7.17222 7.50904 7.87336 7.92066 8.62664 9.01178 9.54906 11.06084 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040247 B = 0.002854 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.538606 B = 9807.738861 C =10016.338024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.081 0.919 9 C 0.152 3.848 10 N -0.499 5.499 11 C 0.024 3.976 12 C -0.110 4.110 13 C -0.094 4.094 14 H 0.083 0.917 15 C 0.070 3.930 16 O -0.379 6.379 17 C 0.101 3.899 18 C -0.086 4.086 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.099 4.099 24 C 0.059 3.941 25 H 0.264 0.736 26 H 0.030 0.970 27 H -0.014 1.014 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.039 0.961 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.892 -15.027 -12.037 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.551 4.551 8 H 0.099 0.901 9 C 0.025 3.975 10 N -0.223 5.223 11 C -0.104 4.104 12 C -0.148 4.148 13 C -0.113 4.113 14 H 0.101 0.899 15 C -0.006 4.006 16 O -0.298 6.298 17 C 0.024 3.976 18 C -0.086 4.086 19 C -0.117 4.117 20 C -0.143 4.143 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.117 4.117 24 C -0.069 4.069 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.004 0.996 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.058 0.942 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.591 -15.279 -11.399 25.272 hybrid contribution 0.534 1.662 -0.917 1.971 sum 17.126 -13.617 -12.316 25.108 Atomic orbital electron populations 1.69897 1.06122 1.26857 1.50972 1.24916 0.94754 0.98879 0.94770 0.86849 0.80405 0.84004 0.78433 1.20386 1.21102 1.19175 1.21039 0.88674 0.94815 1.50563 0.90138 1.20337 0.97208 0.84555 0.95410 1.65341 1.03730 1.20724 1.32529 1.23153 0.91562 0.95962 0.99751 1.22247 0.96716 0.96917 0.98903 1.21972 0.96689 1.00304 0.92325 0.89856 1.22654 0.92701 0.88145 0.97146 1.87968 1.67620 1.50379 1.23875 1.21279 0.96752 0.95019 0.84536 1.19659 0.93844 0.94361 1.00752 1.21095 0.92830 0.99196 0.98614 1.21152 0.99787 0.92739 1.00582 1.21193 0.95363 0.97253 0.99771 1.21157 0.93654 0.98762 1.00665 1.21102 1.00025 0.91955 0.98619 1.22836 0.98490 0.93869 0.91751 0.92646 0.95206 0.99636 0.90971 0.94926 0.91477 0.91832 0.93357 0.93043 0.92496 0.92614 0.85935 0.85971 0.86105 0.85944 0.85861 0.94229 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.63 27.37 -169.99 -4.65 16.97 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.38 6.70 56.52 0.38 -6.00 16 7 C -0.51 -14.68 9.13 -34.44 -0.31 -15.00 16 8 H 0.08 2.50 7.40 -52.48 -0.39 2.11 16 9 C 0.15 3.76 3.74 -4.98 -0.02 3.74 16 10 N -0.50 -10.79 5.44 -231.41 -1.26 -12.05 16 11 C 0.02 0.43 6.49 -2.18 -0.01 0.42 16 12 C -0.11 -1.68 6.50 -25.35 -0.16 -1.84 16 13 C -0.09 -1.47 3.35 -89.24 -0.30 -1.77 16 14 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.07 0.95 5.01 37.16 0.19 1.14 16 16 O -0.38 -5.11 10.11 -35.23 -0.36 -5.46 16 17 C 0.10 1.08 6.06 36.01 0.22 1.30 16 18 C -0.09 -0.91 5.51 -104.63 -0.58 -1.49 16 19 C -0.10 -0.97 9.70 -39.58 -0.38 -1.36 16 20 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 21 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.10 -0.97 9.70 -39.59 -0.38 -1.35 16 24 C 0.06 1.14 5.25 -2.18 -0.01 1.13 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 26 H 0.03 0.75 7.56 -51.93 -0.39 0.36 16 27 H -0.01 -0.34 7.11 -51.93 -0.37 -0.71 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.03 0.57 7.91 -51.93 -0.41 0.16 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.89 7.66 -51.94 -0.40 0.50 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.04 0.78 7.69 -51.93 -0.40 0.38 16 42 H 0.09 1.77 7.54 -51.93 -0.39 1.38 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -31.62 342.16 -10.36 -41.98 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.97 Total: -2.27 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -3.05 Total: -17.51 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.48 Total: -38.88 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.36 Total: -5.46 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.65 Total: 16.97 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.62 -10.36 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075864225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.319 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds