Wall clock time and date at job start Mon Mar 30 2020 01:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00021 * 2 1 4 4 H 1.48499 * 109.47192 * 270.00311 * 3 2 1 5 5 H 1.48502 * 109.47079 * 30.00205 * 3 2 1 6 6 H 1.48503 * 109.46795 * 150.00186 * 3 2 1 7 7 C 1.37872 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99952 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00320 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.47466 * 185.23137 * 9 7 2 11 11 C 1.48559 * 111.00245 * 175.72561 * 10 9 7 12 12 C 1.54381 * 104.59866 * 200.96145 * 11 10 9 13 13 C 1.54255 * 105.05830 * 23.85164 * 12 11 10 14 14 H 1.09005 * 110.32688 * 241.00306 * 13 12 11 15 15 C 1.53002 * 110.32330 * 118.89604 * 13 12 11 16 16 O 1.42905 * 109.46770 * 66.45509 * 15 13 12 17 17 C 1.42902 * 113.99739 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.46837 * 179.97438 * 17 16 15 19 19 C 1.38234 * 119.99828 * 269.72841 * 18 17 16 20 20 C 1.38244 * 119.99717 * 179.76879 * 19 18 17 21 21 C 1.38231 * 119.99897 * 0.50880 * 20 19 18 22 22 C 1.38248 * 119.99952 * 359.74409 * 21 20 19 23 23 C 1.38230 * 119.99724 * 0.02562 * 22 21 20 24 24 C 1.48564 * 111.00163 * 60.30951 * 10 9 7 25 25 H 0.97003 * 119.99521 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46681 * 65.23181 * 9 7 2 27 27 H 1.08999 * 109.47193 * 305.23454 * 9 7 2 28 28 H 1.09001 * 110.40893 * 82.18403 * 11 10 9 29 29 H 1.08994 * 110.41243 * 319.74394 * 11 10 9 30 30 H 1.09003 * 110.32044 * 264.95982 * 12 11 10 31 31 H 1.08989 * 110.41078 * 142.79330 * 12 11 10 32 32 H 1.08998 * 109.47366 * 306.45554 * 15 13 12 33 33 H 1.08995 * 109.47276 * 186.45223 * 15 13 12 34 34 H 1.08993 * 109.47181 * 299.99983 * 17 16 15 35 35 H 1.09001 * 109.47001 * 60.00039 * 17 16 15 36 36 H 1.08002 * 120.00279 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.99633 * 180.22804 * 20 19 18 38 38 H 1.08001 * 120.00340 * 179.72393 * 21 20 19 39 39 H 1.07995 * 119.99665 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.99692 * 179.97438 * 23 22 21 41 41 H 1.09004 * 110.40926 * 40.25534 * 24 10 9 42 42 H 1.09003 * 110.41142 * 277.82207 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5732 -0.1279 11 6 5.4825 -2.6046 -0.2351 12 6 5.7968 -3.9690 -0.8855 13 6 4.5126 -4.3548 -1.6480 14 1 4.1058 -5.2875 -1.2571 15 6 4.8029 -4.4885 -3.1443 16 8 5.6741 -5.5999 -3.3629 17 6 6.0094 -5.8144 -4.7354 18 6 6.9275 -7.0041 -4.8482 19 6 8.2973 -6.8283 -4.7865 20 6 9.1394 -7.9202 -4.8851 21 6 8.6120 -9.1865 -5.0560 22 6 7.2423 -9.3616 -5.1230 23 6 6.4002 -8.2703 -5.0196 24 6 3.5304 -3.1910 -1.3943 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.7638 0.9320 27 1 3.8746 -0.6011 -0.8405 28 1 5.9366 -2.5412 0.7537 29 1 5.8351 -1.7911 -0.8691 30 1 6.0194 -4.7114 -0.1190 31 1 6.6343 -3.8767 -1.5768 32 1 5.2794 -3.5769 -3.5048 33 1 3.8687 -4.6477 -3.6828 34 1 5.1001 -6.0013 -5.3066 35 1 6.5107 -4.9303 -5.1294 36 1 8.7095 -5.8383 -4.6578 37 1 10.2094 -7.7833 -4.8332 38 1 9.2700 -10.0390 -5.1376 39 1 6.8304 -10.3509 -5.2569 40 1 5.3301 -8.4071 -5.0723 41 1 3.5774 -2.4692 -2.2098 42 1 2.5147 -3.5691 -1.2783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075864225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:09 Heat of formation + Delta-G solvation = -39.291786 kcal Electronic energy + Delta-G solvation = -20392.883536 eV Core-core repulsion = 17336.705948 eV Total energy + Delta-G solvation = -3056.177588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43785 -39.96055 -38.31745 -35.22289 -33.69178 -32.54957 -31.78490 -30.53794 -28.84854 -27.18942 -25.73683 -23.77234 -23.47204 -22.25354 -21.73299 -21.00753 -18.89551 -17.84220 -17.59424 -17.15187 -16.85253 -16.54582 -16.27294 -15.81250 -15.53732 -15.04119 -14.68664 -14.50854 -14.35663 -14.25887 -13.73118 -13.62728 -13.34580 -13.31611 -12.98833 -12.69184 -12.46371 -12.18480 -12.06039 -11.97107 -11.83948 -11.75605 -11.69442 -11.45312 -11.28733 -10.81589 -10.58580 -9.81814 -9.75530 -9.23752 -8.30936 -6.35417 0.34361 0.50435 1.32501 1.35094 1.46498 2.32532 2.52591 3.02037 3.06689 3.36808 3.77435 3.80278 3.88986 3.91993 4.11283 4.16634 4.29404 4.32196 4.36693 4.42239 4.44319 4.51060 4.56408 4.66952 4.71959 4.74229 4.77300 4.84533 4.97221 5.00158 5.08164 5.15305 5.16189 5.25764 5.36094 5.49527 5.55452 5.61416 5.67869 5.94091 6.09813 6.13800 6.22738 6.57037 6.70750 7.29021 8.85606 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040247 B = 0.002854 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.538606 B = 9807.738861 C =10016.338024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.522 4.522 8 H 0.037 0.963 9 C 0.162 3.838 10 N -0.523 5.523 11 C 0.024 3.976 12 C -0.099 4.099 13 C -0.085 4.085 14 H 0.079 0.921 15 C 0.077 3.923 16 O -0.393 6.393 17 C 0.098 3.902 18 C -0.107 4.107 19 C -0.113 4.113 20 C -0.131 4.131 21 C -0.121 4.121 22 C -0.132 4.132 23 C -0.115 4.115 24 C 0.061 3.939 25 H 0.268 0.732 26 H 0.029 0.971 27 H -0.008 1.008 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.035 0.965 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.728 -15.063 -12.797 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.174 1.174 7 C -0.560 4.560 8 H 0.055 0.945 9 C 0.035 3.965 10 N -0.247 5.247 11 C -0.104 4.104 12 C -0.137 4.137 13 C -0.104 4.104 14 H 0.097 0.903 15 C 0.001 3.999 16 O -0.313 6.313 17 C 0.022 3.978 18 C -0.107 4.107 19 C -0.131 4.131 20 C -0.149 4.149 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.133 4.133 24 C -0.068 4.068 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.009 0.991 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.145 0.855 41 H 0.053 0.947 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.447 -15.339 -12.166 27.595 hybrid contribution -0.376 1.527 -0.691 1.718 sum 19.071 -13.812 -12.857 26.829 Atomic orbital electron populations 1.70051 1.08125 1.28208 1.52289 1.25873 0.95642 1.03197 0.94173 0.85692 0.79431 0.78511 0.79199 1.19096 1.20531 1.17404 1.21243 0.90982 0.93365 1.50414 0.94484 1.20092 0.94404 0.86675 0.95371 1.65228 1.06628 1.18825 1.33969 1.23253 0.88693 0.97599 1.00881 1.22203 0.96750 0.95601 0.99176 1.21817 0.95946 0.98336 0.94323 0.90254 1.22476 0.93289 0.88796 0.95358 1.87927 1.67472 1.50113 1.25755 1.21424 0.97380 0.95769 0.83211 1.19781 0.94316 0.94556 1.02039 1.21307 0.92783 1.00102 0.98925 1.21473 1.00860 0.92619 0.99925 1.21556 0.95613 0.98020 0.98724 1.21464 0.93992 0.99358 1.00125 1.21305 1.00632 0.92272 0.99121 1.22736 0.98209 0.95003 0.90817 0.92331 0.95310 0.99068 0.89932 0.94215 0.90760 0.89917 0.92538 0.92614 0.91736 0.91521 0.85215 0.83915 0.83716 0.84040 0.85462 0.94693 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.57 13.96 21.45 0.30 -59.28 16 2 C 0.01 0.51 5.47 84.65 0.46 0.97 16 3 Si 0.95 44.29 27.37 68.60 1.88 46.16 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.25 -10.94 6.70 99.48 0.67 -10.27 16 7 C -0.52 -30.73 9.13 25.60 0.23 -30.50 16 8 H 0.04 2.43 7.40 -2.91 -0.02 2.41 16 9 C 0.16 7.98 3.74 85.56 0.32 8.30 16 10 N -0.52 -22.49 5.44 -886.04 -4.82 -27.31 16 11 C 0.02 0.79 6.49 86.45 0.56 1.35 16 12 C -0.10 -2.82 6.50 31.49 0.20 -2.61 16 13 C -0.09 -2.60 3.35 -9.90 -0.03 -2.64 16 14 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 15 C 0.08 1.99 5.01 71.98 0.36 2.35 16 16 O -0.39 -9.99 10.11 -148.98 -1.51 -11.49 16 17 C 0.10 1.98 6.06 71.24 0.43 2.41 16 18 C -0.11 -2.15 5.51 -19.87 -0.11 -2.26 16 19 C -0.11 -2.04 9.70 22.27 0.22 -1.83 16 20 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 21 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 22 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 23 C -0.12 -2.14 9.70 22.27 0.22 -1.93 16 24 C 0.06 2.39 5.25 86.45 0.45 2.84 16 25 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 26 H 0.03 1.42 7.56 -2.39 -0.02 1.40 16 27 H -0.01 -0.40 7.11 -2.39 -0.02 -0.41 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.04 1.28 7.91 -2.39 -0.02 1.26 16 30 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.06 7.66 -2.39 -0.02 2.05 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.17 8.09 -2.39 -0.02 1.15 16 35 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 36 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.03 1.39 7.69 -2.38 -0.02 1.37 16 42 H 0.06 2.51 7.54 -2.39 -0.02 2.50 16 Total: -1.00 -68.97 342.16 0.77 -68.20 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.93 Total: 12.31 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.99 Total: -28.60 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -4.52 Total: -86.58 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -1.51 Total: -11.49 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.16 kcal Total: -68.97 0.77 -68.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075864225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.906 kcal (2) G-P(sol) polarization free energy of solvation -68.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds