Wall clock time and date at job start Mon Mar 30 2020 01:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48503 * 109.47049 * 269.99784 * 3 2 1 5 5 H 1.48500 * 109.47021 * 29.99662 * 3 2 1 6 6 H 1.48498 * 109.46934 * 149.99765 * 3 2 1 7 7 C 1.38652 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99930 * 0.02562 * 7 2 1 9 9 O 1.34825 * 120.00064 * 180.02562 * 7 2 1 10 10 C 1.35754 * 117.00357 * 185.05775 * 9 7 2 11 11 C 1.38881 * 120.06588 * 354.46323 * 10 9 7 12 12 C 1.38099 * 119.93249 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06567 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.92851 * 180.02562 * 13 12 11 15 15 N 1.46906 * 109.47122 * 90.00436 * 14 13 12 16 16 C 1.47630 * 110.99987 * 189.99727 * 15 14 13 17 17 C 1.50815 * 108.08646 * 150.31889 * 16 15 14 18 18 C 1.53863 * 111.59633 * 95.00549 * 17 16 15 19 19 C 1.54179 * 112.00201 * 319.11185 * 18 17 16 20 20 C 1.50753 * 112.60744 * 318.45591 * 19 18 17 21 21 C 1.39781 * 111.00189 * 61.10091 * 15 14 13 22 22 C 1.38303 * 120.13964 * 0.29878 * 13 12 11 23 23 C 1.38100 * 120.06779 * 359.45022 * 22 13 12 24 24 H 0.96996 * 120.00023 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.03700 * 0.02562 * 11 10 9 26 26 H 1.07995 * 119.96989 * 180.02562 * 12 11 10 27 27 H 1.08994 * 109.47425 * 330.00326 * 14 13 12 28 28 H 1.09005 * 109.46952 * 210.00283 * 14 13 12 29 29 H 1.08993 * 109.74960 * 269.98462 * 16 15 14 30 30 H 1.09005 * 109.74411 * 30.66146 * 16 15 14 31 31 H 1.09006 * 109.05036 * 215.63093 * 17 16 15 32 32 H 1.09006 * 109.05145 * 334.52908 * 17 16 15 33 33 H 1.08994 * 108.99032 * 198.44986 * 18 17 16 34 34 H 1.08990 * 108.87831 * 79.70090 * 18 17 16 35 35 H 1.09004 * 108.85206 * 197.64887 * 19 18 17 36 36 H 1.08999 * 108.85218 * 79.26484 * 19 18 17 37 37 H 1.09001 * 109.54646 * 333.15378 * 20 19 18 38 38 H 1.09000 * 109.54149 * 212.88151 * 20 19 18 39 39 H 1.09003 * 109.01738 * 309.71862 * 21 15 14 40 40 H 1.08996 * 109.01666 * 68.61603 * 21 15 14 41 41 H 1.07998 * 119.96431 * 179.70236 * 22 13 12 42 42 H 1.07999 * 120.03525 * 180.27747 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2008 0.0011 10 6 3.9734 -2.4057 -0.1051 11 6 3.2234 -3.5745 -0.0921 12 6 3.8533 -4.7987 -0.1997 13 6 5.2296 -4.8616 -0.3208 14 6 5.9137 -6.1991 -0.4386 15 7 6.0176 -6.5729 -1.8555 16 6 6.4625 -7.9730 -2.0021 17 6 5.8775 -8.5187 -3.2806 18 6 6.8646 -8.3927 -4.4541 19 6 7.6129 -7.0447 -4.4373 20 6 6.7130 -5.8867 -4.0884 21 6 6.7784 -5.6395 -2.5654 22 6 5.9798 -3.6997 -0.3284 23 6 5.3553 -2.4722 -0.2263 24 1 -0.4850 0.8400 -0.0004 25 1 2.1486 -3.5261 0.0020 26 1 3.2706 -5.7080 -0.1901 27 1 5.3334 -6.9523 0.0942 28 1 6.9120 -6.1360 -0.0054 29 1 7.5507 -8.0106 -2.0495 30 1 6.1102 -8.5619 -1.1551 31 1 5.6261 -9.5696 -3.1367 32 1 4.9688 -7.9664 -3.5203 33 1 6.3149 -8.4813 -5.3911 34 1 7.5916 -9.2024 -4.3919 35 1 8.0460 -6.8700 -5.4222 36 1 8.4184 -7.0981 -3.7049 37 1 5.6882 -6.1216 -4.3760 38 1 7.0461 -4.9938 -4.6174 39 1 6.4028 -4.6388 -2.3515 40 1 7.8165 -5.7063 -2.2400 41 1 7.0547 -3.7523 -0.4182 42 1 5.9413 -1.5650 -0.2368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077253163.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:44 Heat of formation + Delta-G solvation = -4.152174 kcal Electronic energy + Delta-G solvation = -21168.924967 eV Core-core repulsion = 18114.271147 eV Total energy + Delta-G solvation = -3054.653820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.81478 -38.86158 -36.79111 -34.47037 -32.38070 -32.15369 -30.34174 -30.00738 -26.84733 -25.28849 -25.20011 -23.63799 -22.11576 -20.82808 -20.16790 -19.43770 -17.87117 -17.24493 -16.32179 -15.57233 -15.13406 -14.90408 -14.53356 -14.32409 -14.02195 -13.94083 -13.68170 -13.48435 -13.07664 -12.73775 -12.53062 -12.28225 -12.22880 -11.99793 -11.66502 -11.33814 -11.25216 -10.95969 -10.80857 -10.66439 -10.60034 -10.52232 -10.37428 -10.30226 -10.13312 -9.36997 -8.85790 -8.23402 -8.06244 -7.28815 -6.40835 -4.07344 2.13623 2.20082 3.22319 3.26094 3.40622 4.01837 4.24269 4.57860 4.71763 4.75149 4.86621 4.87326 5.05070 5.11594 5.15481 5.26006 5.31457 5.43061 5.51380 5.56299 5.66239 5.68374 5.72839 5.76995 5.83487 5.91105 6.00941 6.03412 6.09147 6.15778 6.20800 6.30764 6.37026 6.41507 6.58379 6.81261 7.03174 7.22930 7.27983 7.35493 7.58845 7.63162 7.81598 8.04940 8.94533 9.57189 10.66881 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031083 B = 0.003634 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.586275 B = 7703.280008 C = 7799.707235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.161 3.839 11 C -0.222 4.222 12 C -0.051 4.051 13 C -0.172 4.172 14 C 0.117 3.883 15 N -0.548 5.548 16 C 0.066 3.934 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.118 4.118 21 C 0.069 3.931 22 C -0.072 4.072 23 C -0.193 4.193 24 H 0.279 0.721 25 H 0.132 0.868 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.011 0.989 41 H 0.108 0.892 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.856 -14.364 -5.299 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.109 3.891 11 C -0.241 4.241 12 C -0.069 4.069 13 C -0.174 4.174 14 C -0.009 4.009 15 N -0.272 5.272 16 C -0.061 4.061 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.060 4.060 22 C -0.090 4.090 23 C -0.213 4.213 24 H 0.089 0.911 25 H 0.150 0.850 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.029 0.971 41 H 0.126 0.874 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.317 -13.979 -5.474 20.068 hybrid contribution 0.888 0.656 0.255 1.133 sum 14.205 -13.324 -5.219 20.163 Atomic orbital electron populations 1.69647 1.05564 1.28466 1.48105 1.24464 0.95021 0.98806 0.95709 0.86184 0.80319 0.81462 0.78951 1.19887 1.20800 1.18389 1.20775 0.76904 0.96639 1.52145 0.87607 1.83568 1.22613 1.25821 1.80320 1.19127 0.91678 0.85503 0.92806 1.21282 1.01098 0.91878 1.09854 1.20614 0.93360 0.96624 0.96336 1.19181 0.93828 0.93454 1.10888 1.20807 0.97897 0.94793 0.87417 1.58833 1.55815 1.01725 1.10869 1.21778 0.97668 0.88692 0.97972 1.21428 0.99777 1.00283 0.94194 1.21913 0.98180 0.96779 0.98526 1.21426 0.98486 0.94821 1.00977 1.21476 1.00974 0.97567 0.95626 1.21061 0.94182 0.97481 0.93308 1.20489 0.98087 0.91538 0.98929 1.20160 0.91989 0.97720 1.11399 0.91067 0.85006 0.87213 0.90802 0.95146 0.94420 0.91259 0.92285 0.90390 0.92372 0.92786 0.92654 0.92717 0.90682 0.91747 0.89618 0.97101 0.87351 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 13.96 55.48 0.77 -24.73 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.74 28.62 -169.99 -4.86 16.87 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.39 -11.01 9.95 30.89 0.31 -10.70 16 8 H 0.11 3.06 5.44 -52.48 -0.29 2.77 16 9 O -0.22 -5.78 8.59 0.05 0.00 -5.78 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 C -0.22 -4.79 9.17 -39.39 -0.36 -5.16 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 13 C -0.17 -2.82 4.69 -104.57 -0.49 -3.31 16 14 C 0.12 1.55 5.09 -4.97 -0.03 1.52 16 15 N -0.55 -6.94 3.98 -241.45 -0.96 -7.90 16 16 C 0.07 0.68 5.36 -4.52 -0.02 0.66 16 17 C -0.12 -1.15 5.41 -27.38 -0.15 -1.29 16 18 C -0.12 -1.03 5.91 -25.67 -0.15 -1.18 16 19 C -0.12 -1.14 5.31 -27.24 -0.14 -1.29 16 20 C -0.12 -1.33 5.65 -27.11 -0.15 -1.49 16 21 C 0.07 0.88 4.67 -6.75 -0.03 0.84 16 22 C -0.07 -1.20 7.74 -39.61 -0.31 -1.51 16 23 C -0.19 -3.81 9.99 -39.39 -0.39 -4.21 16 24 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.13 3.01 5.64 -52.49 -0.30 2.71 16 26 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 28 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.04 0.38 6.66 -51.93 -0.35 0.04 16 30 H 0.07 0.66 7.60 -51.93 -0.39 0.27 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.88 7.27 -51.93 -0.38 0.51 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.53 6.57 -51.93 -0.34 0.19 16 37 H 0.07 0.92 7.11 -51.93 -0.37 0.55 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.26 5.25 -51.93 -0.27 0.99 16 40 H 0.01 0.14 7.54 -51.93 -0.39 -0.26 16 41 H 0.11 1.54 8.01 -52.49 -0.42 1.12 16 42 H 0.12 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -28.68 325.31 -9.22 -37.90 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.41 Total: 1.99 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -2.66 Total: -23.27 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: -0.19 Total: -32.63 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: 0.00 Total: -5.78 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.87 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.68 -9.22 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077253163.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.750 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds