Wall clock time and date at job start Mon Mar 30 2020 01:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48503 * 109.47049 * 269.99784 * 3 2 1 5 5 H 1.48500 * 109.47021 * 29.99662 * 3 2 1 6 6 H 1.48498 * 109.46934 * 149.99765 * 3 2 1 7 7 C 1.38652 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99930 * 0.02562 * 7 2 1 9 9 O 1.34825 * 120.00064 * 180.02562 * 7 2 1 10 10 C 1.35754 * 117.00357 * 185.05775 * 9 7 2 11 11 C 1.38881 * 120.06588 * 354.46323 * 10 9 7 12 12 C 1.38099 * 119.93249 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06567 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.92851 * 180.02562 * 13 12 11 15 15 N 1.46906 * 109.47122 * 90.00436 * 14 13 12 16 16 C 1.47630 * 110.99987 * 189.99727 * 15 14 13 17 17 C 1.50815 * 108.08646 * 150.31889 * 16 15 14 18 18 C 1.53863 * 111.59633 * 95.00549 * 17 16 15 19 19 C 1.54179 * 112.00201 * 319.11185 * 18 17 16 20 20 C 1.50753 * 112.60744 * 318.45591 * 19 18 17 21 21 C 1.39781 * 111.00189 * 61.10091 * 15 14 13 22 22 C 1.38303 * 120.13964 * 0.29878 * 13 12 11 23 23 C 1.38100 * 120.06779 * 359.45022 * 22 13 12 24 24 H 0.96996 * 120.00023 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.03700 * 0.02562 * 11 10 9 26 26 H 1.07995 * 119.96989 * 180.02562 * 12 11 10 27 27 H 1.08994 * 109.47425 * 330.00326 * 14 13 12 28 28 H 1.09005 * 109.46952 * 210.00283 * 14 13 12 29 29 H 1.08993 * 109.74960 * 269.98462 * 16 15 14 30 30 H 1.09005 * 109.74411 * 30.66146 * 16 15 14 31 31 H 1.09006 * 109.05036 * 215.63093 * 17 16 15 32 32 H 1.09006 * 109.05145 * 334.52908 * 17 16 15 33 33 H 1.08994 * 108.99032 * 198.44986 * 18 17 16 34 34 H 1.08990 * 108.87831 * 79.70090 * 18 17 16 35 35 H 1.09004 * 108.85206 * 197.64887 * 19 18 17 36 36 H 1.08999 * 108.85218 * 79.26484 * 19 18 17 37 37 H 1.09001 * 109.54646 * 333.15378 * 20 19 18 38 38 H 1.09000 * 109.54149 * 212.88151 * 20 19 18 39 39 H 1.09003 * 109.01738 * 309.71862 * 21 15 14 40 40 H 1.08996 * 109.01666 * 68.61603 * 21 15 14 41 41 H 1.07998 * 119.96431 * 179.70236 * 22 13 12 42 42 H 1.07999 * 120.03525 * 180.27747 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2008 0.0011 10 6 3.9734 -2.4057 -0.1051 11 6 3.2234 -3.5745 -0.0921 12 6 3.8533 -4.7987 -0.1997 13 6 5.2296 -4.8616 -0.3208 14 6 5.9137 -6.1991 -0.4386 15 7 6.0176 -6.5729 -1.8555 16 6 6.4625 -7.9730 -2.0021 17 6 5.8775 -8.5187 -3.2806 18 6 6.8646 -8.3927 -4.4541 19 6 7.6129 -7.0447 -4.4373 20 6 6.7130 -5.8867 -4.0884 21 6 6.7784 -5.6395 -2.5654 22 6 5.9798 -3.6997 -0.3284 23 6 5.3553 -2.4722 -0.2263 24 1 -0.4850 0.8400 -0.0004 25 1 2.1486 -3.5261 0.0020 26 1 3.2706 -5.7080 -0.1901 27 1 5.3334 -6.9523 0.0942 28 1 6.9120 -6.1360 -0.0054 29 1 7.5507 -8.0106 -2.0495 30 1 6.1102 -8.5619 -1.1551 31 1 5.6261 -9.5696 -3.1367 32 1 4.9688 -7.9664 -3.5203 33 1 6.3149 -8.4813 -5.3911 34 1 7.5916 -9.2024 -4.3919 35 1 8.0460 -6.8700 -5.4222 36 1 8.4184 -7.0981 -3.7049 37 1 5.6882 -6.1216 -4.3760 38 1 7.0461 -4.9938 -4.6174 39 1 6.4028 -4.6388 -2.3515 40 1 7.8165 -5.7063 -2.2400 41 1 7.0547 -3.7523 -0.4182 42 1 5.9413 -1.5650 -0.2368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077253163.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:44 Heat of formation + Delta-G solvation = -19.980129 kcal Electronic energy + Delta-G solvation = -21169.611319 eV Core-core repulsion = 18114.271147 eV Total energy + Delta-G solvation = -3055.340172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.12442 -40.23983 -38.33483 -35.49947 -34.42599 -32.99846 -31.87193 -31.43180 -28.16620 -26.94775 -26.06850 -24.84863 -23.68500 -22.12434 -21.35408 -20.20905 -19.80672 -19.08143 -17.26603 -16.76074 -16.67020 -15.95768 -15.83118 -15.70091 -15.59601 -15.31965 -14.99236 -14.79033 -14.33885 -14.24427 -14.07087 -13.84685 -13.13353 -13.09529 -13.01913 -12.74191 -12.48980 -12.44428 -12.28668 -11.98255 -11.76414 -11.60974 -11.44423 -11.26874 -11.18219 -11.12852 -10.89142 -9.77176 -9.12710 -8.87346 -8.49932 -6.22519 0.57288 0.63408 1.31056 1.35332 1.51784 2.28080 2.70710 2.97920 3.13799 3.34049 3.86685 3.96946 4.02428 4.09583 4.11238 4.17684 4.32013 4.33509 4.44593 4.52149 4.58692 4.69419 4.70912 4.75555 4.84057 4.86960 4.98419 5.00358 5.03794 5.19240 5.24877 5.26863 5.34070 5.36516 5.39137 5.50124 5.57793 5.61280 5.76550 5.83723 5.91580 6.22772 6.32633 6.62647 6.84431 7.59102 8.61847 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031083 B = 0.003634 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.586275 B = 7703.280008 C = 7799.707235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.246 6.246 10 C 0.120 3.880 11 C -0.238 4.238 12 C -0.054 4.054 13 C -0.146 4.146 14 C 0.118 3.882 15 N -0.561 5.561 16 C 0.068 3.932 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.117 4.117 21 C 0.070 3.930 22 C -0.061 4.061 23 C -0.192 4.192 24 H 0.285 0.715 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.021 0.979 41 H 0.147 0.853 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.154 -16.173 -5.695 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.153 6.153 10 C 0.071 3.929 11 C -0.257 4.257 12 C -0.072 4.072 13 C -0.147 4.147 14 C -0.008 4.008 15 N -0.286 5.286 16 C -0.059 4.059 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.059 4.059 22 C -0.080 4.080 23 C -0.211 4.211 24 H 0.094 0.906 25 H 0.124 0.876 26 H 0.149 0.851 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.039 0.961 41 H 0.164 0.836 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 16.644 -15.835 -5.876 23.713 hybrid contribution 0.049 0.878 0.326 0.937 sum 16.692 -14.958 -5.551 23.091 Atomic orbital electron populations 1.69732 1.06919 1.29592 1.50243 1.25287 0.95886 1.02165 0.95530 0.85208 0.78791 0.77369 0.79278 1.19081 1.19145 1.18698 1.20708 0.78159 0.96097 1.52618 0.90278 1.83509 1.21181 1.27506 1.83150 1.19661 0.93194 0.85028 0.94981 1.21275 1.00080 0.93287 1.11079 1.20862 0.94624 0.95913 0.95831 1.19666 0.93054 0.95419 1.06547 1.20841 0.98693 0.92872 0.88373 1.58781 1.56604 1.02976 1.10203 1.21846 0.98218 0.87084 0.98707 1.21406 0.99029 1.00820 0.94263 1.21911 0.98286 0.96828 0.98241 1.21388 0.98114 0.94358 1.01540 1.21449 1.00572 0.98583 0.94868 1.21023 0.94510 0.96276 0.94133 1.20904 0.99952 0.90296 0.96821 1.20472 0.90549 0.99670 1.10433 0.90575 0.87643 0.85098 0.89315 0.93233 0.93552 0.90070 0.90792 0.92490 0.92324 0.91340 0.91775 0.92414 0.92220 0.91567 0.91949 0.96067 0.83585 0.85469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.94 13.96 21.61 0.30 -55.64 16 2 C 0.01 0.56 5.49 84.83 0.47 1.03 16 3 Si 0.97 46.00 28.62 68.60 1.96 47.96 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.40 -23.99 9.95 67.92 0.68 -23.31 16 8 H 0.08 4.99 5.44 -2.90 -0.02 4.98 16 9 O -0.25 -13.60 8.59 -22.73 -0.20 -13.79 16 10 C 0.12 5.73 6.65 22.58 0.15 5.88 16 11 C -0.24 -10.71 9.17 22.39 0.21 -10.50 16 12 C -0.05 -1.91 9.69 22.25 0.22 -1.69 16 13 C -0.15 -4.38 4.69 -19.83 -0.09 -4.47 16 14 C 0.12 2.65 5.09 85.56 0.44 3.09 16 15 N -0.56 -12.33 3.98 -917.82 -3.66 -15.99 16 16 C 0.07 1.14 5.36 85.45 0.46 1.60 16 17 C -0.12 -1.92 5.41 30.18 0.16 -1.75 16 18 C -0.12 -1.69 5.91 31.28 0.18 -1.50 16 19 C -0.12 -1.87 5.31 30.26 0.16 -1.71 16 20 C -0.12 -2.38 5.65 30.35 0.17 -2.21 16 21 C 0.07 1.57 4.67 88.07 0.41 1.98 16 22 C -0.06 -1.88 7.74 22.25 0.17 -1.71 16 23 C -0.19 -7.40 9.99 22.39 0.22 -7.17 16 24 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 25 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 26 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 27 H 0.09 1.79 7.75 -2.39 -0.02 1.77 16 28 H 0.05 0.98 8.08 -2.38 -0.02 0.96 16 29 H 0.05 0.73 6.66 -2.39 -0.02 0.72 16 30 H 0.08 1.20 7.60 -2.38 -0.02 1.18 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.06 1.19 7.27 -2.38 -0.02 1.17 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.06 0.91 6.57 -2.39 -0.02 0.89 16 37 H 0.06 1.40 7.11 -2.39 -0.02 1.38 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.67 5.25 -2.39 -0.01 1.65 16 40 H 0.02 0.44 7.54 -2.39 -0.02 0.42 16 41 H 0.15 3.46 8.01 -2.91 -0.02 3.43 16 42 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -65.36 325.31 3.41 -61.95 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 1.00 Total: 17.98 kcal Atomic # 6 Polarization: -46.47 SS G_CDS: 4.00 Total: -42.47 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -3.35 Total: -71.63 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.20 Total: -13.79 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.96 Total: 47.96 kcal Total: -65.36 3.41 -61.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077253163.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.969 kcal (2) G-P(sol) polarization free energy of solvation -65.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds