Wall clock time and date at job start Mon Mar 30 2020 01:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48492 * 109.47096 * 275.12324 * 3 2 1 5 5 H 1.48502 * 109.47056 * 35.12306 * 3 2 1 6 6 H 1.48504 * 109.47227 * 155.12071 * 3 2 1 7 7 C 1.38809 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99568 * 336.58297 * 7 2 1 9 9 N 1.36936 * 120.00258 * 156.57528 * 7 2 1 10 10 C 1.46494 * 119.99978 * 321.62758 * 9 7 2 11 11 C 1.53003 * 109.47055 * 269.99700 * 10 9 7 12 12 H 1.09002 * 109.47380 * 305.00029 * 11 10 9 13 13 O 1.42906 * 109.46982 * 65.00066 * 11 10 9 14 14 C 1.50704 * 109.47175 * 185.00101 * 11 10 9 15 15 C 1.38237 * 119.99465 * 279.72891 * 14 11 10 16 16 C 1.38244 * 119.99351 * 179.78689 * 15 14 11 17 17 C 1.38236 * 119.99952 * 0.44300 * 16 15 14 18 18 C 1.38236 * 120.00007 * 359.80849 * 17 16 15 19 19 C 1.38227 * 120.00022 * 359.97438 * 18 17 16 20 20 C 1.46501 * 119.99856 * 141.62562 * 9 7 2 21 21 C 1.55239 * 110.46835 * 60.05094 * 20 9 7 22 22 C 1.54889 * 102.58699 * 203.39097 * 21 20 9 23 23 C 1.54273 * 104.31298 * 37.93592 * 22 21 20 24 24 C 1.53886 * 106.59510 * 336.32214 * 23 22 21 25 25 H 0.97004 * 120.00311 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47453 * 29.99911 * 10 9 7 27 27 H 1.09001 * 109.47352 * 150.00215 * 10 9 7 28 28 H 0.96706 * 113.99643 * 60.00295 * 13 11 10 29 29 H 1.07994 * 120.00701 * 359.97438 * 15 14 11 30 30 H 1.08001 * 119.99728 * 180.27350 * 16 15 14 31 31 H 1.08002 * 119.99618 * 179.83736 * 17 16 15 32 32 H 1.07999 * 120.00028 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.00255 * 179.97438 * 19 18 17 34 34 H 1.08997 * 110.43012 * 182.70362 * 20 9 7 35 35 H 1.08997 * 110.89333 * 85.10507 * 21 20 9 36 36 H 1.08993 * 110.76525 * 321.62748 * 21 20 9 37 37 H 1.08995 * 110.48920 * 279.19189 * 22 21 20 38 38 H 1.09002 * 110.48870 * 156.67584 * 22 21 20 39 39 H 1.09000 * 110.03644 * 95.60213 * 23 22 21 40 40 H 1.08999 * 110.03488 * 216.99221 * 23 22 21 41 41 H 1.08997 * 110.02788 * 119.28751 * 24 23 22 42 42 H 1.08998 * 110.02843 * 240.66513 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3894 2.1089 -1.3944 5 1 1.5059 2.6190 0.8055 6 1 3.5977 1.4114 0.5890 7 6 2.0103 -1.2021 0.0005 8 1 1.5369 -2.0988 0.3727 9 7 3.2950 -1.2512 -0.4709 10 6 3.6756 -0.4602 -1.6438 11 6 3.4507 -1.2872 -2.9113 12 1 3.9900 -2.2309 -2.8299 13 8 2.0545 -1.5483 -3.0682 14 6 3.9560 -0.5214 -4.1069 15 6 3.1798 0.4757 -4.6675 16 6 3.6452 1.1811 -5.7615 17 6 4.8829 0.8832 -6.3004 18 6 5.6568 -0.1174 -5.7430 19 6 5.1933 -0.8197 -4.6463 20 6 4.2889 -2.0946 0.1978 21 6 3.8428 -3.5813 0.1749 22 6 4.6138 -4.1836 1.3757 23 6 4.5774 -3.0745 2.4474 24 6 4.3707 -1.7462 1.6983 25 1 -0.4851 0.8401 -0.0004 26 1 3.0666 0.4428 -1.6863 27 1 4.7279 -0.1857 -1.5711 28 1 1.5119 -0.7518 -3.1472 29 1 2.2111 0.7056 -4.2490 30 1 3.0407 1.9631 -6.1968 31 1 5.2453 1.4326 -7.1567 32 1 6.6239 -0.3498 -6.1637 33 1 5.7978 -1.6017 -4.2110 34 1 5.2646 -1.9799 -0.2743 35 1 4.1414 -4.0625 -0.7564 36 1 2.7665 -3.6642 0.3260 37 1 5.6425 -4.4086 1.0944 38 1 4.1135 -5.0814 1.7388 39 1 3.7502 -3.2474 3.1358 40 1 5.5199 -3.0527 2.9944 41 1 3.4433 -1.2747 2.0234 42 1 5.2129 -1.0790 1.8821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:02 Heat of formation + Delta-G solvation = -9.557855 kcal Electronic energy + Delta-G solvation = -22114.414384 eV Core-core repulsion = 19059.526156 eV Total energy + Delta-G solvation = -3054.888228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.36136 -37.87815 -36.27603 -33.94443 -31.65633 -31.07311 -30.65841 -28.00177 -27.90924 -26.46563 -23.86976 -22.47390 -22.04675 -20.60112 -19.84492 -19.04879 -17.31333 -16.51416 -15.71347 -15.45875 -15.18544 -14.90550 -14.66325 -14.34674 -13.59065 -13.49251 -13.26741 -13.15135 -12.71080 -12.60231 -12.35537 -12.07827 -11.52514 -11.43248 -11.09600 -10.91738 -10.81837 -10.57738 -10.54086 -10.42206 -10.36962 -10.04155 -9.91517 -9.69212 -9.48626 -9.27532 -8.76391 -8.57378 -8.40792 -6.71639 -5.96087 -3.34407 1.52230 1.55829 3.26760 3.46134 3.51355 3.94555 4.51690 4.76526 5.02253 5.08638 5.17033 5.22866 5.26711 5.32846 5.36667 5.42351 5.62449 5.66831 5.69022 5.83402 6.02361 6.05821 6.15013 6.16245 6.16937 6.21054 6.29469 6.36301 6.39439 6.52239 6.52809 6.60011 6.63797 6.65565 6.72663 6.96441 6.97492 7.10024 7.16345 7.22006 8.08689 8.43251 8.48947 9.02979 9.74821 10.15390 11.19314 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.007013 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.307020 B = 3991.597335 C = 4998.100003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.036 3.964 3 Si 0.861 3.139 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.589 5.589 10 C 0.113 3.887 11 C 0.128 3.872 12 H 0.095 0.905 13 O -0.533 6.533 14 C -0.103 4.103 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.133 4.133 18 C -0.122 4.122 19 C -0.116 4.116 20 C 0.172 3.828 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.137 4.137 25 H 0.261 0.739 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.369 0.631 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.763 -1.094 -6.720 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.164 4.164 3 Si 0.692 3.308 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.369 4.369 8 H 0.097 0.903 9 N -0.308 5.308 10 C -0.013 4.013 11 C 0.065 3.935 12 H 0.113 0.887 13 O -0.337 6.337 14 C -0.104 4.104 15 C -0.131 4.131 16 C -0.137 4.137 17 C -0.151 4.151 18 C -0.140 4.140 19 C -0.134 4.134 20 C 0.065 3.935 21 C -0.172 4.172 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.176 4.176 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.216 0.784 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.793 -1.610 -6.630 12.769 hybrid contribution 0.331 1.745 -0.081 1.778 sum 11.125 0.135 -6.712 12.993 Atomic orbital electron populations 1.69902 1.05797 1.26315 1.51755 1.25424 0.94924 0.97105 0.98937 0.87178 0.81014 0.85668 0.76958 1.21651 1.23082 1.19453 1.18570 0.86540 0.94079 1.37671 0.90278 1.44098 1.08208 1.51770 1.26736 1.21921 0.98112 0.94427 0.86877 1.21629 0.83406 0.98016 0.90421 0.88681 1.86597 1.16046 1.35511 1.95526 1.21052 0.94876 0.96768 0.97732 1.21010 1.00016 0.95742 0.96320 1.21104 0.96269 0.99681 0.96610 1.21060 0.95128 0.98535 1.00357 1.21076 0.99596 0.96621 0.96716 1.21001 0.95878 1.00093 0.96460 1.21336 0.90830 0.90047 0.91286 1.22938 1.01312 0.96972 0.95946 1.22286 0.99464 0.97580 0.96786 1.22040 1.00167 0.95763 0.97672 1.22538 1.02102 0.95978 0.96997 0.92936 0.92258 0.93721 0.78394 0.86110 0.86340 0.86558 0.86438 0.86187 0.92896 0.93105 0.90332 0.92776 0.92731 0.92438 0.93267 0.89746 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.97 55.49 0.78 -25.40 16 2 C 0.04 0.98 5.28 -17.43 -0.09 0.89 16 3 Si 0.86 21.34 25.18 -169.99 -4.28 17.06 16 4 H -0.29 -6.91 6.65 56.52 0.38 -6.53 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.27 7.68 -15.06 -0.12 -6.39 16 8 H 0.08 2.30 6.87 -52.48 -0.36 1.94 16 9 N -0.59 -13.14 2.07 -163.57 -0.34 -13.47 16 10 C 0.11 2.34 4.17 -4.04 -0.02 2.33 16 11 C 0.13 2.39 3.45 -27.88 -0.10 2.30 16 12 H 0.10 1.76 8.00 -51.93 -0.42 1.34 16 13 O -0.53 -11.30 12.66 -35.23 -0.45 -11.74 16 14 C -0.10 -1.70 4.97 -104.62 -0.52 -2.23 16 15 C -0.11 -1.80 9.32 -39.58 -0.37 -2.17 16 16 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 17 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 18 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 19 C -0.12 -1.67 9.67 -39.59 -0.38 -2.05 16 20 C 0.17 3.32 3.40 -66.08 -0.22 3.10 16 21 C -0.13 -2.39 6.47 -24.55 -0.16 -2.55 16 22 C -0.12 -1.86 6.82 -25.07 -0.17 -2.03 16 23 C -0.12 -1.87 6.80 -25.60 -0.17 -2.04 16 24 C -0.14 -2.57 6.41 -25.61 -0.16 -2.74 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.06 1.34 3.46 -51.93 -0.18 1.16 16 27 H 0.04 0.86 7.92 -51.93 -0.41 0.45 16 28 H 0.37 7.50 7.50 45.56 0.34 7.84 16 29 H 0.12 1.93 6.78 -52.49 -0.36 1.58 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.12 1.52 8.04 -52.48 -0.42 1.09 16 34 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.64 6.62 -51.93 -0.34 1.30 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.85 6.92 -51.93 -0.36 1.49 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 330.60 15.07 4.98 4.98 Total: -1.00 -29.19 330.60 -8.87 -38.05 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.88 Total: 10.16 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -3.68 Total: -19.63 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.44 Total: -38.88 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.45 Total: -11.74 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.28 Total: 17.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.19 -8.87 -38.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.496 kcal (2) G-P(sol) polarization free energy of solvation -29.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds