Wall clock time and date at job start Mon Mar 30 2020 01:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48492 * 109.47096 * 275.12324 * 3 2 1 5 5 H 1.48502 * 109.47056 * 35.12306 * 3 2 1 6 6 H 1.48504 * 109.47227 * 155.12071 * 3 2 1 7 7 C 1.38809 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99568 * 336.58297 * 7 2 1 9 9 N 1.36936 * 120.00258 * 156.57528 * 7 2 1 10 10 C 1.46494 * 119.99978 * 321.62758 * 9 7 2 11 11 C 1.53003 * 109.47055 * 269.99700 * 10 9 7 12 12 H 1.09002 * 109.47380 * 305.00029 * 11 10 9 13 13 O 1.42906 * 109.46982 * 65.00066 * 11 10 9 14 14 C 1.50704 * 109.47175 * 185.00101 * 11 10 9 15 15 C 1.38237 * 119.99465 * 279.72891 * 14 11 10 16 16 C 1.38244 * 119.99351 * 179.78689 * 15 14 11 17 17 C 1.38236 * 119.99952 * 0.44300 * 16 15 14 18 18 C 1.38236 * 120.00007 * 359.80849 * 17 16 15 19 19 C 1.38227 * 120.00022 * 359.97438 * 18 17 16 20 20 C 1.46501 * 119.99856 * 141.62562 * 9 7 2 21 21 C 1.55239 * 110.46835 * 60.05094 * 20 9 7 22 22 C 1.54889 * 102.58699 * 203.39097 * 21 20 9 23 23 C 1.54273 * 104.31298 * 37.93592 * 22 21 20 24 24 C 1.53886 * 106.59510 * 336.32214 * 23 22 21 25 25 H 0.97004 * 120.00311 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47453 * 29.99911 * 10 9 7 27 27 H 1.09001 * 109.47352 * 150.00215 * 10 9 7 28 28 H 0.96706 * 113.99643 * 60.00295 * 13 11 10 29 29 H 1.07994 * 120.00701 * 359.97438 * 15 14 11 30 30 H 1.08001 * 119.99728 * 180.27350 * 16 15 14 31 31 H 1.08002 * 119.99618 * 179.83736 * 17 16 15 32 32 H 1.07999 * 120.00028 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.00255 * 179.97438 * 19 18 17 34 34 H 1.08997 * 110.43012 * 182.70362 * 20 9 7 35 35 H 1.08997 * 110.89333 * 85.10507 * 21 20 9 36 36 H 1.08993 * 110.76525 * 321.62748 * 21 20 9 37 37 H 1.08995 * 110.48920 * 279.19189 * 22 21 20 38 38 H 1.09002 * 110.48870 * 156.67584 * 22 21 20 39 39 H 1.09000 * 110.03644 * 95.60213 * 23 22 21 40 40 H 1.08999 * 110.03488 * 216.99221 * 23 22 21 41 41 H 1.08997 * 110.02788 * 119.28751 * 24 23 22 42 42 H 1.08998 * 110.02843 * 240.66513 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3894 2.1089 -1.3944 5 1 1.5059 2.6190 0.8055 6 1 3.5977 1.4114 0.5890 7 6 2.0103 -1.2021 0.0005 8 1 1.5369 -2.0988 0.3727 9 7 3.2950 -1.2512 -0.4709 10 6 3.6756 -0.4602 -1.6438 11 6 3.4507 -1.2872 -2.9113 12 1 3.9900 -2.2309 -2.8299 13 8 2.0545 -1.5483 -3.0682 14 6 3.9560 -0.5214 -4.1069 15 6 3.1798 0.4757 -4.6675 16 6 3.6452 1.1811 -5.7615 17 6 4.8829 0.8832 -6.3004 18 6 5.6568 -0.1174 -5.7430 19 6 5.1933 -0.8197 -4.6463 20 6 4.2889 -2.0946 0.1978 21 6 3.8428 -3.5813 0.1749 22 6 4.6138 -4.1836 1.3757 23 6 4.5774 -3.0745 2.4474 24 6 4.3707 -1.7462 1.6983 25 1 -0.4851 0.8401 -0.0004 26 1 3.0666 0.4428 -1.6863 27 1 4.7279 -0.1857 -1.5711 28 1 1.5119 -0.7518 -3.1472 29 1 2.2111 0.7056 -4.2490 30 1 3.0407 1.9631 -6.1968 31 1 5.2453 1.4326 -7.1567 32 1 6.6239 -0.3498 -6.1637 33 1 5.7978 -1.6017 -4.2110 34 1 5.2646 -1.9799 -0.2743 35 1 4.1414 -4.0625 -0.7564 36 1 2.7665 -3.6642 0.3260 37 1 5.6425 -4.4086 1.0944 38 1 4.1135 -5.0814 1.7388 39 1 3.7502 -3.2474 3.1358 40 1 5.5199 -3.0527 2.9944 41 1 3.4433 -1.2747 2.0234 42 1 5.2129 -1.0790 1.8821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078003396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:01 Heat of formation + Delta-G solvation = -26.941359 kcal Electronic energy + Delta-G solvation = -22115.168190 eV Core-core repulsion = 19059.526156 eV Total energy + Delta-G solvation = -3055.642034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60292 -39.35755 -37.72180 -35.67920 -33.53962 -32.46100 -31.73262 -29.42798 -29.34410 -28.17832 -25.49172 -23.83386 -23.35291 -21.91087 -21.24311 -20.66575 -18.83650 -18.08954 -17.39121 -16.94841 -16.57054 -16.32243 -16.07356 -15.86158 -14.99571 -14.89830 -14.77007 -14.49886 -14.21023 -14.05504 -13.85205 -13.64862 -13.14712 -12.93465 -12.65102 -12.47313 -12.23916 -12.04079 -11.92187 -11.88970 -11.86086 -11.76174 -11.51008 -11.23721 -11.14053 -10.86319 -10.53494 -9.82683 -9.67266 -8.57384 -8.09888 -5.43883 0.42499 0.49432 1.26688 1.40237 1.49275 2.44549 2.83871 3.08377 3.32501 3.73300 3.86425 3.94862 3.99363 4.01881 4.14467 4.22023 4.28999 4.29620 4.47191 4.58128 4.62421 4.66570 4.74857 4.80178 4.87080 4.90958 4.98318 5.01980 5.07766 5.17044 5.20303 5.23101 5.31777 5.54987 5.56520 5.60346 5.62695 5.64300 5.73178 6.05543 6.11883 6.32423 6.82962 7.09828 7.73504 8.15125 9.10264 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.007013 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.307020 B = 3991.597335 C = 4998.100003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.014 4.014 3 Si 0.922 3.078 4 H -0.277 1.277 5 H -0.316 1.316 6 H -0.265 1.265 7 C -0.211 4.211 8 H 0.037 0.963 9 N -0.599 5.599 10 C 0.112 3.888 11 C 0.136 3.864 12 H 0.098 0.902 13 O -0.555 6.555 14 C -0.124 4.124 15 C -0.136 4.136 16 C -0.126 4.126 17 C -0.126 4.126 18 C -0.119 4.119 19 C -0.121 4.121 20 C 0.162 3.838 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.137 4.137 25 H 0.258 0.742 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.368 0.632 29 H 0.106 0.894 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.656 -1.059 -8.204 16.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.209 4.209 3 Si 0.752 3.248 4 H -0.204 1.204 5 H -0.246 1.246 6 H -0.189 1.189 7 C -0.341 4.341 8 H 0.055 0.945 9 N -0.319 5.319 10 C -0.014 4.014 11 C 0.075 3.925 12 H 0.116 0.884 13 O -0.360 6.360 14 C -0.126 4.126 15 C -0.154 4.154 16 C -0.143 4.143 17 C -0.144 4.144 18 C -0.136 4.136 19 C -0.139 4.139 20 C 0.056 3.944 21 C -0.169 4.169 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.177 4.177 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.215 0.785 29 H 0.124 0.876 30 H 0.155 0.845 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.739 -1.586 -8.130 16.907 hybrid contribution -0.818 1.655 0.302 1.871 sum 13.921 0.069 -7.828 15.971 Atomic orbital electron populations 1.70019 1.07339 1.26670 1.55041 1.25838 0.95293 0.99798 1.00005 0.86185 0.79546 0.81923 0.77126 1.20441 1.24569 1.18907 1.18269 0.87924 0.92310 1.35597 0.94507 1.44196 1.07441 1.52371 1.27930 1.21948 0.98670 0.93684 0.87123 1.21472 0.82105 0.98081 0.90883 0.88426 1.86554 1.17778 1.36007 1.95702 1.20814 0.96366 0.97577 0.97800 1.21068 0.99828 0.96763 0.97750 1.21381 0.97292 0.99805 0.95863 1.21507 0.94159 0.98087 1.00663 1.21489 1.00806 0.95689 0.95637 1.21243 0.95002 1.00674 0.97007 1.21625 0.91133 0.89949 0.91646 1.22832 0.99244 0.96788 0.98063 1.22253 1.00612 0.97369 0.94780 1.22018 1.01398 0.94120 0.97645 1.22499 1.00500 0.97724 0.96947 0.93300 0.94340 0.91610 0.78494 0.87641 0.84486 0.83235 0.83057 0.84562 0.90192 0.92153 0.94408 0.89874 0.91724 0.93311 0.90266 0.93870 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.27 13.97 21.65 0.30 -57.97 16 2 C -0.01 -0.79 5.28 84.86 0.45 -0.34 16 3 Si 0.92 45.71 25.18 68.60 1.73 47.44 16 4 H -0.28 -13.06 6.65 99.48 0.66 -12.40 16 5 H -0.32 -16.27 7.11 99.48 0.71 -15.56 16 6 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.21 -11.55 7.68 84.03 0.64 -10.90 16 8 H 0.04 2.32 6.87 -2.91 -0.02 2.30 16 9 N -0.60 -27.01 2.07 -671.41 -1.39 -28.40 16 10 C 0.11 4.57 4.17 86.38 0.36 4.93 16 11 C 0.14 5.09 3.45 29.85 0.10 5.19 16 12 H 0.10 3.53 8.00 -2.39 -0.02 3.51 16 13 O -0.56 -24.52 12.66 -148.98 -1.89 -26.40 16 14 C -0.12 -3.98 4.97 -19.86 -0.10 -4.08 16 15 C -0.14 -4.28 9.32 22.27 0.21 -4.07 16 16 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 17 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 18 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 19 C -0.12 -3.13 9.67 22.27 0.22 -2.91 16 20 C 0.16 6.10 3.40 46.19 0.16 6.26 16 21 C -0.13 -4.62 6.47 32.01 0.21 -4.41 16 22 C -0.11 -3.11 6.82 31.67 0.22 -2.89 16 23 C -0.11 -3.36 6.80 31.32 0.21 -3.15 16 24 C -0.14 -5.04 6.41 31.32 0.20 -4.84 16 25 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.04 1.75 3.46 -2.39 -0.01 1.74 16 27 H 0.07 2.40 7.92 -2.39 -0.02 2.38 16 28 H 0.37 15.96 7.50 -74.05 -0.56 15.41 16 29 H 0.11 3.52 6.78 -2.91 -0.02 3.50 16 30 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 31 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.14 2.98 8.04 -2.91 -0.02 2.95 16 34 H 0.08 2.60 7.84 -2.39 -0.02 2.58 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.93 6.92 -2.39 -0.02 1.91 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -66.65 330.60 2.70 -63.95 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.40 Total: 30.27 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 3.55 Total: -28.88 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -1.09 Total: -86.37 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -1.89 Total: -26.40 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.73 Total: 47.44 kcal Total: -66.65 2.70 -63.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.007 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds