Wall clock time and date at job start Mon Mar 30 2020 01:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 119.99674 * 2 1 4 4 H 1.48503 * 109.47046 * 270.26061 * 3 2 1 5 5 H 1.48497 * 109.47463 * 30.25927 * 3 2 1 6 6 H 1.48499 * 109.46950 * 150.26336 * 3 2 1 7 7 C 1.38804 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00465 * 35.21522 * 7 2 1 9 9 N 1.36938 * 120.00269 * 214.94031 * 7 2 1 10 10 C 1.46509 * 119.99538 * 36.24180 * 9 7 2 11 11 C 1.52999 * 109.47119 * 94.35305 * 10 9 7 12 12 H 1.08997 * 109.46788 * 54.32713 * 11 10 9 13 13 O 1.42903 * 109.46873 * 294.33250 * 11 10 9 14 14 C 1.50696 * 109.47111 * 174.33056 * 11 10 9 15 15 C 1.38233 * 119.99956 * 80.57334 * 14 11 10 16 16 C 1.38242 * 119.99479 * 179.81279 * 15 14 11 17 17 C 1.38225 * 120.00113 * 0.38998 * 16 15 14 18 18 C 1.38240 * 120.00406 * 359.86017 * 17 16 15 19 19 C 1.38229 * 119.99747 * 359.95697 * 18 17 16 20 20 C 1.46500 * 120.00291 * 216.24719 * 9 7 2 21 21 C 1.54264 * 110.03197 * 57.90375 * 20 9 7 22 22 C 1.54964 * 104.15753 * 217.13482 * 21 20 9 23 23 C 1.54895 * 102.77933 * 37.88923 * 22 21 20 24 24 C 1.53877 * 110.03159 * 300.68460 * 20 9 7 25 25 H 0.96995 * 120.00076 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46838 * 214.34943 * 10 9 7 27 27 H 1.09000 * 109.46910 * 334.34906 * 10 9 7 28 28 H 0.96697 * 113.99725 * 305.91586 * 13 11 10 29 29 H 1.08000 * 120.00253 * 359.97438 * 15 14 11 30 30 H 1.07995 * 119.99327 * 180.22786 * 16 15 14 31 31 H 1.08005 * 120.00069 * 179.83395 * 17 16 15 32 32 H 1.07997 * 119.99935 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.00159 * 179.97438 * 19 18 17 34 34 H 1.09008 * 110.01494 * 179.29806 * 20 9 7 35 35 H 1.09002 * 110.48860 * 335.78457 * 21 20 9 36 36 H 1.09000 * 110.48501 * 98.43035 * 21 20 9 37 37 H 1.09000 * 110.72609 * 279.57444 * 22 21 20 38 38 H 1.08998 * 110.92158 * 156.29504 * 22 21 20 39 39 H 1.08994 * 110.49159 * 203.40141 * 23 22 21 40 40 H 1.09004 * 110.59706 * 80.81053 * 23 22 21 41 41 H 1.08998 * 110.03306 * 238.57595 * 24 20 9 42 42 H 1.09006 * 110.03008 * 359.95541 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4921 2.0496 -1.4001 5 1 1.4504 2.6511 0.7055 6 1 3.5505 1.4386 0.6945 7 6 2.0103 -1.2021 -0.0005 8 1 1.6186 -2.0517 -0.5403 9 7 3.1945 -1.3093 0.6786 10 6 3.3761 -0.6046 1.9502 11 6 3.0317 -1.5442 3.1076 12 1 3.6176 -2.4590 3.0195 13 8 1.6396 -1.8640 3.0634 14 6 3.3505 -0.8674 4.4158 15 6 2.4649 0.0469 4.9547 16 6 2.7556 0.6648 6.1568 17 6 3.9355 0.3743 6.8156 18 6 4.8235 -0.5363 6.2741 19 6 4.5312 -1.1570 5.0741 20 6 4.2800 -2.1285 0.1336 21 6 4.6664 -1.6260 -1.2727 22 6 4.9874 -2.9199 -2.0627 23 6 3.9254 -3.9162 -1.5344 24 6 3.8094 -3.5841 -0.0324 25 1 -0.4850 0.8400 0.0004 26 1 4.4129 -0.2808 2.0413 27 1 2.7197 0.2651 1.9805 28 1 1.0589 -1.0910 3.0456 29 1 1.5447 0.2767 4.4381 30 1 2.0620 1.3764 6.5796 31 1 4.1638 0.8590 7.7534 32 1 5.7455 -0.7629 6.7887 33 1 5.2251 -1.8681 4.6507 34 1 5.1454 -2.0891 0.7952 35 1 3.8313 -1.0964 -1.7314 36 1 5.5447 -0.9826 -1.2199 37 1 5.9937 -3.2713 -1.8349 38 1 4.8686 -2.7612 -3.1345 39 1 4.2633 -4.9431 -1.6732 40 1 2.9698 -3.7590 -2.0348 41 1 4.4469 -4.2512 0.5478 42 1 2.7736 -3.6811 0.2932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:06 Heat of formation + Delta-G solvation = -8.901738 kcal Electronic energy + Delta-G solvation = -22135.927661 eV Core-core repulsion = 19081.067884 eV Total energy + Delta-G solvation = -3054.859777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.32332 -37.91367 -36.22904 -33.85191 -31.66864 -31.06284 -30.63205 -27.92246 -27.86618 -26.55361 -23.80252 -22.42447 -22.00493 -20.55529 -19.95725 -18.99224 -17.26346 -16.51031 -15.65101 -15.31071 -15.14320 -14.88011 -14.63811 -14.28083 -13.60347 -13.45233 -13.34805 -13.13371 -12.73388 -12.53067 -12.29822 -12.10897 -11.47730 -11.34558 -10.94906 -10.85137 -10.72922 -10.53545 -10.46800 -10.42048 -10.34810 -10.12398 -9.97373 -9.74477 -9.44239 -9.29953 -8.73619 -8.53865 -8.32306 -6.75042 -6.05330 -3.27826 1.55333 1.58654 3.35140 3.48080 3.54141 3.97461 4.54453 4.78833 5.05087 5.10865 5.19474 5.21233 5.29361 5.36970 5.39794 5.42983 5.64940 5.70210 5.72343 5.87783 6.04723 6.09619 6.18046 6.19455 6.20895 6.24443 6.36240 6.42161 6.45138 6.53375 6.57074 6.63292 6.67949 6.70801 6.76647 6.94004 7.01100 7.17173 7.19271 7.19938 8.03701 8.43189 8.51266 9.03487 9.75389 10.18134 11.10050 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.006894 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.740803 B = 4060.635131 C = 4959.784794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.043 3.957 3 Si 0.832 3.168 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.250 4.250 8 H 0.078 0.922 9 N -0.587 5.587 10 C 0.127 3.873 11 C 0.124 3.876 12 H 0.093 0.907 13 O -0.536 6.536 14 C -0.100 4.100 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.134 4.134 18 C -0.122 4.122 19 C -0.117 4.117 20 C 0.170 3.830 21 C -0.136 4.136 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.134 4.134 25 H 0.261 0.739 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.372 0.628 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.201 -1.699 7.611 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.158 4.158 3 Si 0.659 3.341 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.306 5.306 10 C 0.000 4.000 11 C 0.062 3.938 12 H 0.111 0.889 13 O -0.341 6.341 14 C -0.102 4.102 15 C -0.130 4.130 16 C -0.137 4.137 17 C -0.152 4.152 18 C -0.140 4.140 19 C -0.136 4.136 20 C 0.063 3.937 21 C -0.175 4.175 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.173 4.173 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.220 0.780 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.245 -2.221 7.593 12.168 hybrid contribution 0.321 1.775 -0.026 1.804 sum 9.565 -0.446 7.567 12.205 Atomic orbital electron populations 1.70113 1.06116 1.26573 1.48791 1.25399 0.94686 0.97012 0.98654 0.87614 0.81857 0.86616 0.78051 1.21871 1.22406 1.18944 1.18480 0.94763 0.95502 1.29034 0.90465 1.44166 1.12868 1.55855 1.17734 1.21906 0.98653 0.93936 0.85469 1.21661 0.84302 0.98432 0.89426 0.88901 1.86548 1.14786 1.36237 1.96504 1.21049 0.94543 0.96740 0.97821 1.21010 0.99648 0.96416 0.95916 1.21102 0.97167 0.99902 0.95549 1.21051 0.94965 0.99115 1.00057 1.21069 0.99329 0.97444 0.96194 1.20998 0.96907 1.00316 0.95331 1.21073 0.89431 0.90344 0.92804 1.22825 1.00718 0.96462 0.97480 1.22418 0.97985 0.96662 0.98900 1.22248 0.99002 0.97303 0.96953 1.22585 1.02549 0.97166 0.95007 0.92946 0.94131 0.92083 0.78029 0.86046 0.86380 0.86624 0.86507 0.86276 0.93241 0.89788 0.93574 0.92773 0.92695 0.93323 0.91718 0.93795 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.01 13.97 55.49 0.78 -24.24 16 2 C 0.04 1.17 4.98 -17.43 -0.09 1.08 16 3 Si 0.83 20.53 26.42 -169.99 -4.49 16.04 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.26 -6.29 5.82 56.52 0.33 -5.96 16 7 C -0.25 -6.42 7.69 -15.06 -0.12 -6.54 16 8 H 0.08 2.20 7.37 -52.48 -0.39 1.82 16 9 N -0.59 -12.92 1.98 -164.38 -0.33 -13.24 16 10 C 0.13 2.62 3.50 -4.04 -0.01 2.60 16 11 C 0.12 2.31 3.44 -27.89 -0.10 2.22 16 12 H 0.09 1.72 8.01 -51.93 -0.42 1.30 16 13 O -0.54 -11.25 12.83 -35.23 -0.45 -11.70 16 14 C -0.10 -1.65 4.97 -104.62 -0.52 -2.18 16 15 C -0.11 -1.77 9.34 -39.58 -0.37 -2.14 16 16 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 17 C -0.13 -1.69 10.05 -39.59 -0.40 -2.08 16 18 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16 19 C -0.12 -1.70 9.67 -39.58 -0.38 -2.08 16 20 C 0.17 3.26 3.42 -66.81 -0.23 3.03 16 21 C -0.14 -2.50 6.42 -25.03 -0.16 -2.66 16 22 C -0.12 -1.90 6.91 -24.69 -0.17 -2.07 16 23 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 16 24 C -0.13 -2.42 6.16 -25.61 -0.16 -2.58 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.04 0.79 8.02 -51.93 -0.42 0.38 16 27 H 0.06 1.36 4.52 -51.93 -0.23 1.13 16 28 H 0.37 7.59 7.69 45.56 0.35 7.94 16 29 H 0.12 1.90 6.89 -52.49 -0.36 1.54 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.53 8.04 -52.49 -0.42 1.11 16 34 H 0.05 0.88 7.88 -51.92 -0.41 0.47 16 35 H 0.08 1.80 7.03 -51.93 -0.37 1.44 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.69 7.03 -51.93 -0.36 1.32 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -28.47 332.54 -9.19 -37.66 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.04 Total: 9.97 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -3.67 Total: -19.48 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.45 Total: -37.48 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.45 Total: -11.70 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.49 Total: 16.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.47 -9.19 -37.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.754 kcal (2) G-P(sol) polarization free energy of solvation -28.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds