Wall clock time and date at job start Mon Mar 30 2020 01:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 119.99674 * 2 1 4 4 H 1.48503 * 109.47046 * 270.26061 * 3 2 1 5 5 H 1.48497 * 109.47463 * 30.25927 * 3 2 1 6 6 H 1.48499 * 109.46950 * 150.26336 * 3 2 1 7 7 C 1.38804 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00465 * 35.21522 * 7 2 1 9 9 N 1.36938 * 120.00269 * 214.94031 * 7 2 1 10 10 C 1.46509 * 119.99538 * 36.24180 * 9 7 2 11 11 C 1.52999 * 109.47119 * 94.35305 * 10 9 7 12 12 H 1.08997 * 109.46788 * 54.32713 * 11 10 9 13 13 O 1.42903 * 109.46873 * 294.33250 * 11 10 9 14 14 C 1.50696 * 109.47111 * 174.33056 * 11 10 9 15 15 C 1.38233 * 119.99956 * 80.57334 * 14 11 10 16 16 C 1.38242 * 119.99479 * 179.81279 * 15 14 11 17 17 C 1.38225 * 120.00113 * 0.38998 * 16 15 14 18 18 C 1.38240 * 120.00406 * 359.86017 * 17 16 15 19 19 C 1.38229 * 119.99747 * 359.95697 * 18 17 16 20 20 C 1.46500 * 120.00291 * 216.24719 * 9 7 2 21 21 C 1.54264 * 110.03197 * 57.90375 * 20 9 7 22 22 C 1.54964 * 104.15753 * 217.13482 * 21 20 9 23 23 C 1.54895 * 102.77933 * 37.88923 * 22 21 20 24 24 C 1.53877 * 110.03159 * 300.68460 * 20 9 7 25 25 H 0.96995 * 120.00076 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46838 * 214.34943 * 10 9 7 27 27 H 1.09000 * 109.46910 * 334.34906 * 10 9 7 28 28 H 0.96697 * 113.99725 * 305.91586 * 13 11 10 29 29 H 1.08000 * 120.00253 * 359.97438 * 15 14 11 30 30 H 1.07995 * 119.99327 * 180.22786 * 16 15 14 31 31 H 1.08005 * 120.00069 * 179.83395 * 17 16 15 32 32 H 1.07997 * 119.99935 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.00159 * 179.97438 * 19 18 17 34 34 H 1.09008 * 110.01494 * 179.29806 * 20 9 7 35 35 H 1.09002 * 110.48860 * 335.78457 * 21 20 9 36 36 H 1.09000 * 110.48501 * 98.43035 * 21 20 9 37 37 H 1.09000 * 110.72609 * 279.57444 * 22 21 20 38 38 H 1.08998 * 110.92158 * 156.29504 * 22 21 20 39 39 H 1.08994 * 110.49159 * 203.40141 * 23 22 21 40 40 H 1.09004 * 110.59706 * 80.81053 * 23 22 21 41 41 H 1.08998 * 110.03306 * 238.57595 * 24 20 9 42 42 H 1.09006 * 110.03008 * 359.95541 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4921 2.0496 -1.4001 5 1 1.4504 2.6511 0.7055 6 1 3.5505 1.4386 0.6945 7 6 2.0103 -1.2021 -0.0005 8 1 1.6186 -2.0517 -0.5403 9 7 3.1945 -1.3093 0.6786 10 6 3.3761 -0.6046 1.9502 11 6 3.0317 -1.5442 3.1076 12 1 3.6176 -2.4590 3.0195 13 8 1.6396 -1.8640 3.0634 14 6 3.3505 -0.8674 4.4158 15 6 2.4649 0.0469 4.9547 16 6 2.7556 0.6648 6.1568 17 6 3.9355 0.3743 6.8156 18 6 4.8235 -0.5363 6.2741 19 6 4.5312 -1.1570 5.0741 20 6 4.2800 -2.1285 0.1336 21 6 4.6664 -1.6260 -1.2727 22 6 4.9874 -2.9199 -2.0627 23 6 3.9254 -3.9162 -1.5344 24 6 3.8094 -3.5841 -0.0324 25 1 -0.4850 0.8400 0.0004 26 1 4.4129 -0.2808 2.0413 27 1 2.7197 0.2651 1.9805 28 1 1.0589 -1.0910 3.0456 29 1 1.5447 0.2767 4.4381 30 1 2.0620 1.3764 6.5796 31 1 4.1638 0.8590 7.7534 32 1 5.7455 -0.7629 6.7887 33 1 5.2251 -1.8681 4.6507 34 1 5.1454 -2.0891 0.7952 35 1 3.8313 -1.0964 -1.7314 36 1 5.5447 -0.9826 -1.2199 37 1 5.9937 -3.2713 -1.8349 38 1 4.8686 -2.7612 -3.1345 39 1 4.2633 -4.9431 -1.6732 40 1 2.9698 -3.7590 -2.0348 41 1 4.4469 -4.2512 0.5478 42 1 2.7736 -3.6811 0.2932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078003398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:05 Heat of formation + Delta-G solvation = -25.219841 kcal Electronic energy + Delta-G solvation = -22136.635267 eV Core-core repulsion = 19081.067884 eV Total energy + Delta-G solvation = -3055.567383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.57011 -39.38709 -37.67974 -35.58950 -33.53115 -32.43235 -31.71042 -29.35491 -29.30249 -28.26442 -25.41197 -23.77344 -23.33468 -21.85854 -21.31245 -20.66269 -18.80740 -18.00591 -17.29644 -16.83474 -16.50311 -16.34750 -16.10191 -15.79967 -14.99071 -14.88026 -14.82163 -14.44378 -14.21240 -14.01787 -13.89764 -13.60695 -13.08481 -12.75081 -12.64036 -12.40070 -12.19981 -12.08774 -11.93818 -11.87445 -11.76830 -11.74081 -11.38420 -11.33960 -11.21650 -10.86228 -10.42990 -9.80525 -9.64267 -8.59174 -8.15506 -5.33223 0.44995 0.51576 1.33296 1.44943 1.50134 2.48678 2.85144 3.02525 3.39253 3.76424 3.90886 3.97169 3.98549 4.03338 4.16813 4.25782 4.31191 4.32718 4.50550 4.62926 4.66867 4.69648 4.76142 4.85085 4.94111 4.95140 4.97599 5.07984 5.10604 5.19585 5.21863 5.22109 5.32559 5.51774 5.58559 5.62306 5.66038 5.68900 5.76453 6.03267 6.14027 6.34315 6.85965 7.11491 7.77757 8.20704 9.04516 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.006894 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.740803 B = 4060.635131 C = 4959.784794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.002 4.002 3 Si 0.889 3.111 4 H -0.304 1.304 5 H -0.304 1.304 6 H -0.248 1.248 7 C -0.220 4.220 8 H 0.038 0.962 9 N -0.596 5.596 10 C 0.127 3.873 11 C 0.134 3.866 12 H 0.095 0.905 13 O -0.557 6.557 14 C -0.122 4.122 15 C -0.133 4.133 16 C -0.126 4.126 17 C -0.128 4.128 18 C -0.120 4.120 19 C -0.123 4.123 20 C 0.161 3.839 21 C -0.137 4.137 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.129 4.129 25 H 0.258 0.742 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.370 0.630 29 H 0.108 0.892 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.069 0.931 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.749 -1.812 9.367 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.200 4.200 3 Si 0.718 3.282 4 H -0.232 1.232 5 H -0.231 1.231 6 H -0.171 1.171 7 C -0.350 4.350 8 H 0.055 0.945 9 N -0.316 5.316 10 C 0.001 3.999 11 C 0.072 3.928 12 H 0.113 0.887 13 O -0.362 6.362 14 C -0.123 4.123 15 C -0.152 4.152 16 C -0.144 4.144 17 C -0.146 4.146 18 C -0.137 4.137 19 C -0.141 4.141 20 C 0.055 3.945 21 C -0.176 4.176 22 C -0.148 4.148 23 C -0.154 4.154 24 C -0.168 4.168 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.217 0.783 29 H 0.126 0.874 30 H 0.155 0.845 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.153 0.847 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.844 -2.340 9.366 16.068 hybrid contribution -0.739 1.720 -0.485 1.934 sum 12.105 -0.620 8.881 15.026 Atomic orbital electron populations 1.70199 1.07459 1.26838 1.52151 1.25738 0.94989 0.99343 0.99881 0.86686 0.81300 0.83214 0.77045 1.23218 1.23104 1.17140 1.18187 0.95573 0.93819 1.27433 0.94466 1.44253 1.12629 1.56292 1.18454 1.21899 0.98949 0.93591 0.85462 1.21485 0.82867 0.98113 0.90299 0.88749 1.86508 1.16320 1.36660 1.96724 1.20824 0.96175 0.97929 0.97414 1.21076 0.99488 0.97377 0.97226 1.21383 0.98284 0.99951 0.94745 1.21495 0.93924 0.98333 1.00818 1.21474 1.00437 0.96455 0.95360 1.21234 0.96200 1.00720 0.95993 1.21351 0.89235 0.90192 0.93702 1.22782 0.99854 0.97898 0.97100 1.22385 0.99019 0.94435 0.98953 1.22230 0.98367 0.99350 0.95409 1.22494 1.00468 0.97220 0.96611 0.93269 0.92474 0.94181 0.78260 0.87415 0.84476 0.83331 0.83197 0.84748 0.90764 0.93653 0.91976 0.89716 0.91828 0.90469 0.94372 0.91186 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.51 13.97 21.65 0.30 -55.20 16 2 C 0.00 -0.13 4.98 84.86 0.42 0.30 16 3 Si 0.89 44.00 26.42 68.60 1.81 45.82 16 4 H -0.30 -15.49 7.11 99.48 0.71 -14.79 16 5 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 6 H -0.25 -11.38 5.82 99.48 0.58 -10.81 16 7 C -0.22 -11.84 7.69 84.03 0.65 -11.19 16 8 H 0.04 2.29 7.37 -2.91 -0.02 2.27 16 9 N -0.60 -26.49 1.98 -673.98 -1.33 -27.82 16 10 C 0.13 5.20 3.50 86.38 0.30 5.50 16 11 C 0.13 5.00 3.44 29.85 0.10 5.10 16 12 H 0.09 3.43 8.01 -2.39 -0.02 3.41 16 13 O -0.56 -24.39 12.83 -148.98 -1.91 -26.30 16 14 C -0.12 -3.93 4.97 -19.87 -0.10 -4.03 16 15 C -0.13 -4.18 9.34 22.27 0.21 -3.98 16 16 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 17 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 18 C -0.12 -2.58 10.05 22.27 0.22 -2.35 16 19 C -0.12 -3.24 9.67 22.27 0.22 -3.02 16 20 C 0.16 5.97 3.42 45.72 0.16 6.13 16 21 C -0.14 -4.87 6.42 31.69 0.20 -4.67 16 22 C -0.11 -3.15 6.91 31.91 0.22 -2.93 16 23 C -0.12 -3.65 6.83 31.67 0.22 -3.44 16 24 C -0.13 -4.55 6.16 31.32 0.19 -4.36 16 25 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.06 2.13 8.02 -2.39 -0.02 2.11 16 27 H 0.04 1.80 4.52 -2.39 -0.01 1.79 16 28 H 0.37 16.17 7.69 -74.06 -0.57 15.60 16 29 H 0.11 3.55 6.89 -2.91 -0.02 3.53 16 30 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 31 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 32 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.13 3.02 8.04 -2.91 -0.02 3.00 16 34 H 0.07 2.40 7.88 -2.38 -0.02 2.38 16 35 H 0.04 1.96 7.03 -2.39 -0.02 1.94 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.04 1.69 7.03 -2.38 -0.02 1.68 16 Total: -1.00 -64.59 332.54 2.63 -61.96 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.30 Total: 29.98 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 3.46 Total: -28.42 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -1.03 Total: -83.03 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -1.91 Total: -26.30 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.81 Total: 45.82 kcal Total: -64.59 2.63 -61.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.737 kcal (2) G-P(sol) polarization free energy of solvation -64.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds