Wall clock time and date at job start Mon Mar 30 2020 02:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38355 * 119.85878 * 2 1 4 4 C 1.37951 * 120.15117 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.07735 * 180.02562 * 4 3 2 6 6 C 1.39582 * 119.84949 * 0.02562 * 4 3 2 7 7 C 1.47850 * 120.14154 * 179.97438 * 6 4 3 8 8 O 1.21553 * 120.00185 * 90.00011 * 7 6 4 9 9 N 1.34777 * 119.99831 * 269.71966 * 7 6 4 10 10 C 1.46499 * 120.00199 * 180.27510 * 9 7 6 11 11 C 1.52997 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47596 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47595 * 179.97438 * 12 11 10 14 14 H 1.08010 * 119.99443 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00313 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00241 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99929 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47502 * 89.99764 * 17 15 13 19 19 H 1.48507 * 109.47078 * 209.99683 * 17 15 13 20 20 H 1.48503 * 109.46936 * 329.99409 * 17 15 13 21 21 C 1.39569 * 119.71017 * 0.24996 * 6 4 3 22 22 C 1.50705 * 120.07038 * 179.72433 * 21 6 4 23 23 C 1.37957 * 119.85643 * 359.47467 * 21 6 4 24 24 H 1.09001 * 109.46832 * 89.99927 * 1 2 3 25 25 H 1.09004 * 109.47439 * 209.99755 * 1 2 3 26 26 H 1.09000 * 109.47092 * 330.00489 * 1 2 3 27 27 H 1.08002 * 119.92144 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47235 * 269.97921 * 5 4 3 29 29 H 1.09001 * 109.47202 * 29.97824 * 5 4 3 30 30 H 1.09003 * 109.47390 * 149.97905 * 5 4 3 31 31 H 0.97001 * 119.99727 * 0.28406 * 9 7 6 32 32 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 33 33 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 34 34 H 1.09007 * 109.46479 * 300.00271 * 11 10 9 35 35 H 1.09003 * 109.47114 * 59.99483 * 11 10 9 36 36 H 1.08998 * 109.46818 * 300.00027 * 12 11 10 37 37 H 1.09002 * 109.47128 * 59.99191 * 12 11 10 38 38 H 0.97000 * 120.00464 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.46898 * 90.00261 * 22 21 6 40 40 H 1.08999 * 109.46910 * 209.99947 * 22 21 6 41 41 H 1.09001 * 109.47632 * 330.00134 * 22 21 6 42 42 H 1.07997 * 119.92986 * 180.27570 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.3238 2.5148 0.0011 6 6 4.2762 -0.0002 0.0005 7 6 5.7547 -0.0001 0.0005 8 8 6.3625 -0.0001 1.0532 9 7 6.4285 -0.0059 -1.1667 10 6 7.8935 -0.0119 -1.1667 11 6 8.4035 -0.0170 -2.6092 12 6 9.9334 -0.0240 -2.6093 13 6 10.4358 -0.0296 -4.0300 14 1 9.7338 -0.0288 -4.8509 15 6 11.7912 -0.0359 -4.2820 16 7 12.2296 -0.0413 -5.5219 17 14 13.0051 -0.0381 -2.8622 18 1 13.3209 -1.4387 -2.4830 19 1 14.2514 0.6558 -3.2754 20 1 12.4082 0.6670 -1.6995 21 6 3.5752 -1.2070 -0.0053 22 6 4.3238 -2.5150 -0.0116 23 6 2.1957 -1.2001 0.0000 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6522 2.1331 -0.0004 28 1 4.5051 2.8302 -1.0264 29 1 3.7316 3.2723 0.5146 30 1 5.2764 2.3881 0.5156 31 1 5.9435 -0.0058 -2.0067 32 1 8.2605 0.8777 -0.6551 33 1 8.2531 -0.9022 -0.6507 34 1 8.0364 -0.9066 -3.1212 35 1 8.0438 0.8734 -3.1249 36 1 10.3008 0.8653 -2.0972 37 1 10.2927 -0.9146 -2.0937 38 1 13.1832 -0.0453 -5.6992 39 1 4.5042 -2.8353 1.0145 40 1 3.7318 -3.2699 -0.5291 41 1 5.2767 -2.3859 -0.5248 42 1 1.6521 -2.1333 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079864574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:27 Heat of formation + Delta-G solvation = -46.638906 kcal Electronic energy + Delta-G solvation = -20540.901157 eV Core-core repulsion = 17484.404973 eV Total energy + Delta-G solvation = -3056.496183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53580 -38.66143 -35.51736 -33.83934 -33.81551 -33.21441 -31.40926 -28.22116 -28.15974 -26.96157 -26.63359 -23.18782 -21.66873 -21.03112 -20.63817 -19.75057 -17.62331 -16.74175 -16.49321 -15.89288 -15.02633 -14.98664 -14.49753 -14.40655 -14.08523 -13.67285 -13.44984 -13.37401 -13.32550 -13.24457 -12.85919 -12.73197 -12.71389 -12.01584 -11.95415 -11.92785 -11.61054 -11.47360 -11.21446 -11.09521 -10.90134 -10.24743 -9.98999 -9.79546 -9.58319 -9.23805 -8.89619 -8.81315 -8.76901 -8.56418 -6.07124 -4.05944 0.91992 1.12631 2.65249 3.23618 3.30635 3.38266 3.42474 3.47088 4.43639 4.48175 4.49012 4.52166 4.75907 5.00455 5.02885 5.18962 5.26757 5.26945 5.28602 5.32482 5.43506 5.47318 5.52278 5.56085 5.62516 5.64735 5.70012 5.90159 5.99750 6.03711 6.19106 6.25271 6.33698 6.34263 6.42984 6.67024 6.71799 6.77472 7.21575 7.34975 7.59706 7.75570 8.27353 8.49507 8.96686 9.55109 11.06131 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031372 B = 0.003139 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.313696 B = 8919.195843 C = 8987.058616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.067 4.067 3 C -0.130 4.130 4 C -0.042 4.042 5 C -0.124 4.124 6 C -0.132 4.132 7 C 0.563 3.437 8 O -0.538 6.538 9 N -0.718 5.718 10 C 0.113 3.887 11 C -0.113 4.113 12 C -0.011 4.011 13 C -0.522 4.522 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C -0.042 4.042 22 C -0.123 4.123 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.401 0.599 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.263 0.737 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.796 0.123 11.085 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.067 4.067 3 C -0.148 4.148 4 C -0.042 4.042 5 C -0.181 4.181 6 C -0.135 4.135 7 C 0.348 3.652 8 O -0.415 6.415 9 N -0.369 5.369 10 C -0.010 4.010 11 C -0.151 4.151 12 C -0.049 4.049 13 C -0.560 4.560 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.042 4.042 22 C -0.179 4.179 23 C -0.148 4.148 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.235 0.765 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.152 0.125 11.730 25.954 hybrid contribution 0.541 -0.021 0.184 0.572 sum -22.612 0.104 11.914 25.559 Atomic orbital electron populations 1.20823 0.90968 1.02898 1.02521 1.20014 0.96146 0.92984 0.97576 1.20805 0.92983 0.97781 1.03265 1.19867 0.93636 0.94095 0.96623 1.20908 1.00489 0.93653 1.03005 1.19721 0.93040 0.93656 1.07068 1.18254 0.86762 0.75960 0.84207 1.90797 1.69615 1.49704 1.31368 1.46245 1.08360 1.74116 1.08150 1.21697 0.77521 1.02032 0.99741 1.21705 0.99240 1.01803 0.92339 1.19500 0.90509 0.96660 0.98210 1.21093 0.92616 1.51087 0.91198 0.91008 1.25025 0.98476 0.94464 0.95502 1.69910 1.14492 1.51004 1.18794 0.86779 0.80696 0.78606 0.83239 1.20240 1.21363 1.18887 1.19867 0.93642 0.94087 0.96643 1.20898 1.00261 0.93688 1.03075 1.20805 0.92973 0.97783 1.03262 0.90897 0.91409 0.91411 0.85609 0.90404 0.90951 0.91016 0.76467 0.91675 0.91679 0.92087 0.92052 0.96306 0.96746 0.92687 0.90498 0.90881 0.91139 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.00 36.00 0.36 -0.34 16 2 C -0.07 -0.61 5.89 -104.53 -0.62 -1.22 16 3 C -0.13 -1.26 9.34 -39.64 -0.37 -1.63 16 4 C -0.04 -0.48 5.91 -104.23 -0.62 -1.09 16 5 C -0.12 -1.29 9.62 36.00 0.35 -0.95 16 6 C -0.13 -1.72 5.63 -104.97 -0.59 -2.31 16 7 C 0.56 8.62 4.19 -12.33 -0.05 8.57 16 8 O -0.54 -10.26 17.10 5.32 0.09 -10.17 16 9 N -0.72 -10.23 5.55 -61.25 -0.34 -10.57 16 10 C 0.11 1.87 5.67 -4.04 -0.02 1.84 16 11 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 12 C -0.01 -0.25 4.04 -27.89 -0.11 -0.37 16 13 C -0.52 -14.67 9.66 -34.45 -0.33 -15.00 16 14 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 17 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 21 C -0.04 -0.48 5.91 -104.23 -0.62 -1.10 16 22 C -0.12 -1.28 9.62 36.01 0.35 -0.94 16 23 C -0.13 -1.25 9.34 -39.64 -0.37 -1.63 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 26 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 27 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.07 0.90 7.08 -51.93 -0.37 0.53 16 31 H 0.40 4.87 8.46 -40.82 -0.35 4.52 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 37 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 41 H 0.07 0.83 7.07 -51.93 -0.37 0.46 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -32.98 349.52 -8.68 -41.66 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.92 Total: 0.29 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -2.88 Total: -16.55 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.43 Total: -37.54 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.98 -8.68 -41.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079864574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.981 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds