Wall clock time and date at job start Mon Mar 30 2020 02:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38355 * 119.85878 * 2 1 4 4 C 1.37951 * 120.15117 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.07735 * 180.02562 * 4 3 2 6 6 C 1.39582 * 119.84949 * 0.02562 * 4 3 2 7 7 C 1.47850 * 120.14154 * 179.97438 * 6 4 3 8 8 O 1.21553 * 120.00185 * 90.00011 * 7 6 4 9 9 N 1.34777 * 119.99831 * 269.71966 * 7 6 4 10 10 C 1.46499 * 120.00199 * 180.27510 * 9 7 6 11 11 C 1.52997 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47596 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47595 * 179.97438 * 12 11 10 14 14 H 1.08010 * 119.99443 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00313 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00241 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99929 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47502 * 89.99764 * 17 15 13 19 19 H 1.48507 * 109.47078 * 209.99683 * 17 15 13 20 20 H 1.48503 * 109.46936 * 329.99409 * 17 15 13 21 21 C 1.39569 * 119.71017 * 0.24996 * 6 4 3 22 22 C 1.50705 * 120.07038 * 179.72433 * 21 6 4 23 23 C 1.37957 * 119.85643 * 359.47467 * 21 6 4 24 24 H 1.09001 * 109.46832 * 89.99927 * 1 2 3 25 25 H 1.09004 * 109.47439 * 209.99755 * 1 2 3 26 26 H 1.09000 * 109.47092 * 330.00489 * 1 2 3 27 27 H 1.08002 * 119.92144 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47235 * 269.97921 * 5 4 3 29 29 H 1.09001 * 109.47202 * 29.97824 * 5 4 3 30 30 H 1.09003 * 109.47390 * 149.97905 * 5 4 3 31 31 H 0.97001 * 119.99727 * 0.28406 * 9 7 6 32 32 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 33 33 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 34 34 H 1.09007 * 109.46479 * 300.00271 * 11 10 9 35 35 H 1.09003 * 109.47114 * 59.99483 * 11 10 9 36 36 H 1.08998 * 109.46818 * 300.00027 * 12 11 10 37 37 H 1.09002 * 109.47128 * 59.99191 * 12 11 10 38 38 H 0.97000 * 120.00464 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.46898 * 90.00261 * 22 21 6 40 40 H 1.08999 * 109.46910 * 209.99947 * 22 21 6 41 41 H 1.09001 * 109.47632 * 330.00134 * 22 21 6 42 42 H 1.07997 * 119.92986 * 180.27570 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.3238 2.5148 0.0011 6 6 4.2762 -0.0002 0.0005 7 6 5.7547 -0.0001 0.0005 8 8 6.3625 -0.0001 1.0532 9 7 6.4285 -0.0059 -1.1667 10 6 7.8935 -0.0119 -1.1667 11 6 8.4035 -0.0170 -2.6092 12 6 9.9334 -0.0240 -2.6093 13 6 10.4358 -0.0296 -4.0300 14 1 9.7338 -0.0288 -4.8509 15 6 11.7912 -0.0359 -4.2820 16 7 12.2296 -0.0413 -5.5219 17 14 13.0051 -0.0381 -2.8622 18 1 13.3209 -1.4387 -2.4830 19 1 14.2514 0.6558 -3.2754 20 1 12.4082 0.6670 -1.6995 21 6 3.5752 -1.2070 -0.0053 22 6 4.3238 -2.5150 -0.0116 23 6 2.1957 -1.2001 0.0000 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6522 2.1331 -0.0004 28 1 4.5051 2.8302 -1.0264 29 1 3.7316 3.2723 0.5146 30 1 5.2764 2.3881 0.5156 31 1 5.9435 -0.0058 -2.0067 32 1 8.2605 0.8777 -0.6551 33 1 8.2531 -0.9022 -0.6507 34 1 8.0364 -0.9066 -3.1212 35 1 8.0438 0.8734 -3.1249 36 1 10.3008 0.8653 -2.0972 37 1 10.2927 -0.9146 -2.0937 38 1 13.1832 -0.0453 -5.6992 39 1 4.5042 -2.8353 1.0145 40 1 3.7318 -3.2699 -0.5291 41 1 5.2767 -2.3859 -0.5248 42 1 1.6521 -2.1333 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079864574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:27 Heat of formation + Delta-G solvation = -66.650705 kcal Electronic energy + Delta-G solvation = -20541.768933 eV Core-core repulsion = 17484.404973 eV Total energy + Delta-G solvation = -3057.363960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52722 -39.68845 -37.02566 -35.18768 -34.62476 -34.50981 -33.20354 -29.51476 -28.91593 -27.91548 -27.71407 -24.79079 -22.74707 -22.24362 -21.81878 -20.87684 -19.05478 -18.50732 -17.41845 -17.21317 -16.37403 -16.30198 -15.78673 -15.30365 -15.14077 -14.97787 -14.78605 -14.41052 -14.18244 -14.00946 -13.97537 -13.83591 -13.66603 -13.61007 -13.28254 -12.76671 -12.72383 -12.64816 -12.42439 -12.21063 -11.95441 -11.94394 -11.79986 -11.62109 -11.35126 -10.98046 -10.77133 -10.18940 -9.58604 -9.56424 -8.30230 -6.34255 0.10836 0.35543 1.36245 1.37859 1.46610 1.49677 2.14187 2.35576 2.62233 3.05510 3.63383 3.75481 3.77973 3.88645 4.07117 4.15689 4.31264 4.36683 4.45381 4.46906 4.57800 4.63110 4.65399 4.67110 4.78556 4.85003 4.85599 4.89169 4.93924 5.01303 5.04950 5.25483 5.27969 5.31161 5.43234 5.45768 5.48599 5.53443 5.60789 5.63780 5.98462 6.26367 6.43788 6.73699 7.09747 7.30636 8.86250 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031372 B = 0.003139 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.313696 B = 8919.195843 C = 8987.058616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.133 4.133 4 C -0.054 4.054 5 C -0.122 4.122 6 C -0.160 4.160 7 C 0.569 3.431 8 O -0.582 6.582 9 N -0.709 5.709 10 C 0.125 3.875 11 C -0.099 4.099 12 C -0.011 4.011 13 C -0.531 4.531 14 H 0.037 0.963 15 C 0.005 3.995 16 N -0.950 5.950 17 Si 0.947 3.053 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.248 1.248 21 C -0.054 4.054 22 C -0.122 4.122 23 C -0.133 4.133 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.150 0.850 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.412 0.588 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.001 0.131 12.391 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.064 4.064 3 C -0.150 4.150 4 C -0.054 4.054 5 C -0.178 4.178 6 C -0.163 4.163 7 C 0.357 3.643 8 O -0.462 6.462 9 N -0.359 5.359 10 C 0.002 3.998 11 C -0.137 4.137 12 C -0.049 4.049 13 C -0.569 4.569 14 H 0.056 0.944 15 C -0.192 4.192 16 N -0.591 5.591 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.171 1.171 21 C -0.054 4.054 22 C -0.178 4.178 23 C -0.150 4.150 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.168 0.832 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.249 0.751 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -25.392 0.132 13.018 28.535 hybrid contribution 1.104 -0.023 -0.300 1.144 sum -24.288 0.109 12.718 27.417 Atomic orbital electron populations 1.20895 0.88525 1.04074 1.03563 1.20441 0.97912 0.92454 0.95562 1.21110 0.92204 0.99262 1.02464 1.20055 0.94666 0.93723 0.96973 1.20904 0.99450 0.94092 1.03371 1.19660 0.91360 0.95178 1.10099 1.18622 0.87866 0.74451 0.83395 1.90759 1.70817 1.51778 1.32837 1.46084 1.07417 1.73654 1.08762 1.21372 0.78915 1.01572 0.97945 1.21476 0.96279 1.02190 0.93763 1.19458 0.93544 0.96847 0.95076 1.21450 0.92345 1.50290 0.92774 0.94445 1.25975 1.00740 0.94196 0.98264 1.70055 1.15128 1.52670 1.21248 0.85703 0.77997 0.79217 0.80026 1.19221 1.20987 1.17147 1.20052 0.94668 0.93707 0.97004 1.20907 0.99793 0.94200 1.02917 1.21113 0.92205 0.99264 1.02460 0.89743 0.90292 0.90284 0.83210 0.89679 0.88847 0.93720 0.75130 0.92235 0.92158 0.91729 0.91722 0.96049 0.96168 0.92479 0.90898 0.88466 0.92934 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.00 71.23 0.71 -0.23 16 2 C -0.06 -0.96 5.89 -19.81 -0.12 -1.07 16 3 C -0.13 -2.22 9.34 22.23 0.21 -2.01 16 4 C -0.05 -1.17 5.91 -19.61 -0.12 -1.29 16 5 C -0.12 -2.45 9.62 71.24 0.69 -1.76 16 6 C -0.16 -4.11 5.63 -20.09 -0.11 -4.23 16 7 C 0.57 17.65 4.19 86.79 0.36 18.01 16 8 O -0.58 -22.77 17.10 -3.88 -0.07 -22.83 16 9 N -0.71 -20.15 5.55 -465.97 -2.58 -22.73 16 10 C 0.13 4.12 5.67 86.38 0.49 4.61 16 11 C -0.10 -3.64 5.27 30.59 0.16 -3.48 16 12 C -0.01 -0.52 4.04 29.84 0.12 -0.40 16 13 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 14 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 15 C 0.01 0.30 5.47 84.65 0.46 0.76 16 16 N -0.95 -59.56 13.96 21.44 0.30 -59.26 16 17 Si 0.95 44.54 27.47 68.60 1.88 46.43 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 21 C -0.05 -1.18 5.91 -19.61 -0.12 -1.29 16 22 C -0.12 -2.46 9.62 71.24 0.69 -1.77 16 23 C -0.13 -2.23 9.34 22.23 0.21 -2.02 16 24 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.08 0.51 8.08 -2.38 -0.02 0.49 16 26 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 27 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 30 H 0.04 1.13 7.08 -2.39 -0.02 1.12 16 31 H 0.41 9.85 8.46 -92.71 -0.78 9.06 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 37 H 0.02 0.90 7.57 -2.39 -0.02 0.89 16 38 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.42 8.09 -2.39 -0.02 1.40 16 41 H 0.05 1.23 7.07 -2.39 -0.02 1.21 16 42 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -72.53 349.52 3.57 -68.96 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.16 Total: 15.62 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 3.88 Total: -26.18 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -2.28 Total: -81.99 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.07 Total: -22.83 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.43 kcal Total: -72.53 3.57 -68.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079864574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.307 kcal (2) G-P(sol) polarization free energy of solvation -72.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds