Wall clock time and date at job start Mon Mar 30 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99577 * 2 1 4 4 H 1.48505 * 109.47029 * 239.99581 * 3 2 1 5 5 H 1.48493 * 109.47389 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46983 * 120.00086 * 3 2 1 7 7 C 1.37873 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00014 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47399 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00406 * 190.00372 * 10 9 7 12 12 C 1.53000 * 109.47384 * 76.12739 * 11 10 9 13 13 O 1.42896 * 109.47161 * 64.22002 * 12 11 10 14 14 C 1.35905 * 117.00403 * 184.59547 * 13 12 11 15 15 C 1.38729 * 120.05451 * 175.13784 * 14 13 12 16 16 C 1.38153 * 119.94012 * 179.97438 * 15 14 13 17 17 C 1.38269 * 120.05351 * 359.97438 * 16 15 14 18 18 C 1.38267 * 120.11386 * 0.04269 * 17 16 15 19 19 C 1.38147 * 120.05261 * 359.95753 * 18 17 16 20 20 C 1.46893 * 111.00078 * 66.04359 * 10 9 7 21 21 C 1.53001 * 109.47566 * 199.39020 * 20 10 9 22 22 C 1.53001 * 117.49929 * 242.84143 * 21 20 10 23 23 C 1.52999 * 117.50163 * 174.21827 * 21 20 10 24 24 H 0.97003 * 120.00333 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47482 * 59.99787 * 9 7 2 26 26 H 1.08997 * 109.47724 * 300.00296 * 9 7 2 27 27 H 1.09001 * 109.47129 * 316.12955 * 11 10 9 28 28 H 1.09004 * 109.47271 * 196.13238 * 11 10 9 29 29 H 1.09002 * 109.47301 * 304.22067 * 12 11 10 30 30 H 1.09002 * 109.47243 * 184.22359 * 12 11 10 31 31 H 1.07994 * 120.03152 * 359.70144 * 15 14 13 32 32 H 1.07994 * 119.97137 * 179.97438 * 16 15 14 33 33 H 1.07995 * 119.94010 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.97012 * 179.97438 * 18 17 16 35 35 H 1.08005 * 120.02059 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47281 * 319.39085 * 20 10 9 37 37 H 1.09008 * 109.47213 * 79.38969 * 20 10 9 38 38 H 1.09002 * 115.54823 * 28.54199 * 21 20 10 39 39 H 1.09008 * 117.49986 * 359.97438 * 22 21 20 40 40 H 1.09004 * 117.49746 * 145.01441 * 22 21 20 41 41 H 1.08998 * 117.49880 * 214.97852 * 23 21 20 42 42 H 1.08999 * 117.49669 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5214 -4.8936 -0.2364 12 6 1.1673 -5.0138 -1.7200 13 8 2.3675 -5.0597 -2.4940 14 6 2.2299 -5.0696 -3.8461 15 6 3.3524 -5.0117 -4.6592 16 6 3.2098 -5.0225 -6.0333 17 6 1.9496 -5.0915 -6.5981 18 6 0.8293 -5.1490 -5.7898 19 6 0.9667 -5.1385 -4.4153 20 6 2.9700 -3.6534 1.2556 21 6 4.2435 -4.4766 1.0521 22 6 4.3985 -5.7544 1.8793 23 6 5.2465 -4.5236 2.2065 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8902 27 1 0.6095 -4.9340 0.3592 28 1 2.1780 -5.7159 0.0482 29 1 0.5726 -4.1519 -2.0226 30 1 0.5940 -5.9263 -1.8839 31 1 4.3366 -4.9537 -4.2185 32 1 4.0832 -4.9769 -6.6667 33 1 1.8402 -5.0994 -7.6725 34 1 -0.1539 -5.2025 -6.2335 35 1 0.0912 -5.1838 -3.7844 36 1 3.2368 -2.6382 1.5493 37 1 2.3632 -4.1103 2.0375 38 1 4.6429 -4.4818 0.0379 39 1 3.5934 -6.0084 2.5689 40 1 4.8999 -6.6005 1.4093 41 1 6.3057 -4.5600 1.9519 42 1 4.9988 -3.9684 3.1112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081044593.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:39 Heat of formation + Delta-G solvation = 14.483484 kcal Electronic energy + Delta-G solvation = -21124.265381 eV Core-core repulsion = 18070.419664 eV Total energy + Delta-G solvation = -3053.845718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.76648 -37.94175 -36.99072 -35.37071 -32.55140 -30.93116 -30.18831 -28.78346 -27.39955 -25.00781 -23.20915 -22.21176 -22.04997 -21.61675 -20.32094 -19.56287 -17.98481 -16.58721 -15.89063 -15.69205 -15.45289 -15.06068 -14.74595 -14.36744 -14.04811 -13.78535 -13.54027 -13.24425 -12.83600 -12.67588 -12.30373 -11.89159 -11.70295 -11.58121 -11.35530 -11.24142 -11.06458 -10.86927 -10.75432 -10.64086 -10.44781 -10.32538 -10.05093 -9.58460 -9.44563 -9.15513 -8.82948 -8.42916 -7.90568 -7.23786 -6.02810 -4.03323 1.51650 1.67219 3.34463 3.38234 3.41937 3.61020 4.00441 4.17712 4.42962 4.73899 4.99982 5.05723 5.17874 5.26675 5.31030 5.33336 5.39899 5.44111 5.54393 5.58695 5.69353 5.78654 5.82755 5.87006 5.94097 6.03990 6.15745 6.19025 6.24736 6.35416 6.37225 6.52580 6.55381 6.60530 6.68046 6.86588 6.99192 7.24579 7.31356 7.78374 7.84781 8.08515 8.21208 8.54719 9.04418 9.60848 11.08132 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.005940 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.321736 B = 4712.667105 C = 6334.526446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.191 3.809 10 N -0.526 5.526 11 C 0.055 3.945 12 C 0.069 3.931 13 O -0.292 6.292 14 C 0.145 3.855 15 C -0.156 4.156 16 C -0.084 4.084 17 C -0.172 4.172 18 C -0.082 4.082 19 C -0.213 4.213 20 C 0.093 3.907 21 C -0.130 4.130 22 C -0.192 4.192 23 C -0.185 4.185 24 H 0.261 0.739 25 H 0.030 0.970 26 H -0.010 1.010 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.020 0.980 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 -12.540 -5.401 14.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.251 5.251 11 C -0.074 4.074 12 C -0.007 4.007 13 O -0.204 6.204 14 C 0.098 3.902 15 C -0.175 4.175 16 C -0.102 4.102 17 C -0.190 4.190 18 C -0.100 4.100 19 C -0.232 4.232 20 C -0.035 4.035 21 C -0.148 4.148 22 C -0.229 4.229 23 C -0.222 4.222 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.007 0.993 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.038 0.962 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.450 -12.331 -5.646 14.274 hybrid contribution -0.516 0.851 0.607 1.165 sum 3.935 -11.480 -5.039 13.140 Atomic orbital electron populations 1.69944 1.06050 1.26861 1.51132 1.24973 0.94844 0.99274 0.95455 0.86580 0.79471 0.82794 0.78713 1.20147 1.21400 1.20245 1.21116 0.93548 0.89833 1.49853 0.91782 1.19778 0.90123 0.87606 0.95850 1.61992 1.27565 1.02010 1.33508 1.22066 0.98060 0.94810 0.92428 1.22922 0.85719 1.00350 0.91676 1.86182 1.33698 1.87120 1.13386 1.19144 0.93610 0.93660 0.83739 1.20450 0.97664 1.06665 0.92729 1.20904 0.97398 0.97979 0.93882 1.20950 0.92688 1.05885 0.99489 1.20900 0.98562 0.97554 0.92952 1.21307 0.96613 1.09000 0.96238 1.21567 0.91575 1.00190 0.90206 1.22470 0.97954 0.98009 0.96413 1.23010 1.03172 0.92254 1.04474 1.22891 0.96777 1.01941 1.00625 0.92914 0.95243 0.99252 0.93586 0.90824 0.91295 0.92897 0.85376 0.85862 0.86460 0.86262 0.85641 0.89106 0.96208 0.87107 0.89510 0.89567 0.89360 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.50 -14.11 8.24 -34.44 -0.28 -14.39 16 8 H 0.06 1.79 7.31 -52.49 -0.38 1.41 16 9 C 0.19 4.89 4.55 -4.98 -0.02 4.86 16 10 N -0.53 -11.14 4.29 -236.07 -1.01 -12.16 16 11 C 0.06 0.97 5.20 -3.82 -0.02 0.95 16 12 C 0.07 1.16 4.93 37.16 0.18 1.34 16 13 O -0.29 -5.27 10.07 -19.44 -0.20 -5.47 16 14 C 0.15 2.41 6.68 -39.22 -0.26 2.15 16 15 C -0.16 -2.34 9.99 -39.43 -0.39 -2.74 16 16 C -0.08 -1.06 10.04 -39.60 -0.40 -1.46 16 17 C -0.17 -2.12 10.04 -39.56 -0.40 -2.52 16 18 C -0.08 -1.07 10.04 -39.60 -0.40 -1.47 16 19 C -0.21 -3.19 9.03 -39.43 -0.36 -3.55 16 20 C 0.09 1.79 5.07 -3.83 -0.02 1.77 16 21 C -0.13 -2.12 5.14 -90.62 -0.47 -2.59 16 22 C -0.19 -2.61 10.12 -26.73 -0.27 -2.88 16 23 C -0.18 -2.57 10.25 -26.73 -0.27 -2.84 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.80 6.60 -51.93 -0.34 0.46 16 26 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 27 H 0.05 0.79 7.99 -51.93 -0.42 0.37 16 28 H 0.07 1.19 7.23 -51.93 -0.38 0.81 16 29 H 0.07 1.28 6.17 -51.93 -0.32 0.96 16 30 H 0.05 0.73 7.72 -51.93 -0.40 0.33 16 31 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.13 1.75 6.33 -52.48 -0.33 1.42 16 36 H 0.09 1.96 6.58 -51.93 -0.34 1.62 16 37 H 0.02 0.37 7.74 -51.92 -0.40 -0.03 16 38 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 39 H 0.09 1.14 8.03 -51.92 -0.42 0.72 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -30.18 346.21 -10.42 -40.60 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.67 Total: 2.78 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -3.47 Total: -21.87 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.28 Total: -38.04 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.20 Total: -5.47 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.18 -10.42 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081044593.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.082 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds